9umh
V-type (V2-type) amyloid fibril (40) of Tottori (D7N) mutant
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9umh |
| deposition_date | 2025-04-22 |
| title | V-type (V2-type) amyloid fibril (40) of Tottori (D7N) mutant |
| keywords | Amyloid, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 27.81 Å |
| rg_electron | 26.77 Å |
| i0 | 52502600.00 |
| molecular_weight | 58953.0 kDa |
| excluded_volume | 74891 ų |
| envelope_volume | 94306 ų |
| shell_volume | 29544 ų |
| envelope_diameter | 98.7 Å |
| shell_rg | 34.00 Å |
| envelope_rg | 27.43 Å |
| shape_rg | 26.89 Å |
| total_rg | 27.16 Å |
| total_atoms | 8421 |
| n_residues | 567 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 95.3 Å |
| rg_real | 27.86 Å |
| rg_real_error | 0.86 Å |
| i0_real | 5.2500e+07 |
| i0_real_error | 8.1420e+05 |
| rg_reciprocal | 27.85 Å |
| i0_reciprocal | 52500000.0000 |
| total_estimate | 0.8747 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 35.1 Å |
| skewness | 0.405 |
| kurtosis | -0.119 |
| angular_range | — – 0.2850 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 8478000.0000 |
| n_real_points | 58 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.821; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.963; Smooth: 0.941 |