9wao
Structure of type II Abeta fibrils from 5xFAD mice
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9wao |
| deposition_date | 2025-08-12 |
| title | Structure of type II Abeta fibrils from 5xFAD mice |
| keywords | Abeta, amyloid, cryo-EM, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 22.43 Å |
| rg_electron | 21.85 Å |
| i0 | 22096300.00 |
| molecular_weight | 38482.0 kDa |
| excluded_volume | 49395 ų |
| envelope_volume | 54904 ų |
| shell_volume | 21654 ų |
| envelope_diameter | 76.6 Å |
| shell_rg | 28.20 Å |
| envelope_rg | 21.96 Å |
| shape_rg | 21.89 Å |
| total_rg | 22.58 Å |
| total_atoms | 2712 |
| n_residues | 372 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 77.2 Å |
| rg_real | 22.50 Å |
| rg_real_error | 0.61 Å |
| i0_real | 2.2100e+07 |
| i0_real_error | 3.0370e+05 |
| rg_reciprocal | 22.49 Å |
| i0_reciprocal | 22100000.0000 |
| total_estimate | 0.7658 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 24.6 Å |
| skewness | 0.497 |
| kurtosis | -0.151 |
| angular_range | — – 0.3550 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 5233000.0000 |
| n_real_points | 67 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.661; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.969; Smooth: 0.000 |