5weo

Activated GluA2 complex bound to glutamate, cyclothiazide, and STZ in digitonin

Method: ELECTRON MICROSCOPY Dmax: 220.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit chimera

Mus musculus

UniProt O88602

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 2–208 Chain B; UniProt 2–208 Chain C; UniProt 2–208 Chain D; UniProt 2–208 Fragment:UNP P19491 residues 25-847, UNP O88602 2-208 linked via LINKER GT Mutation:N241E, V382L, G384E, N385D, V758L GLU GLUTAMIC ACID × 4 CYZ CYCLOTHIAZIDE × 4 ELECTRON MICROSCOPY cryo-EM buffer:pH 8 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 4.20 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

39 other PDB entries and 40 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CCG2_MOUSE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 820–1026; UniProt 2–208 Author chain B; PDBConstruct 820–1026; UniProt 2–208 Author chain C; PDBConstruct 820–1026; UniProt 2–208 Author chain D; PDBConstruct 820–1026; UniProt 2–208

Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit chimera

Mus musculus

UniProt P19491

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 25–847 Chain B; UniProt 25–847 Chain C; UniProt 25–847 Chain D; UniProt 25–847 Fragment:UNP P19491 residues 25-847, UNP O88602 2-208 linked via LINKER GT Mutation:N241E, V382L, G384E, N385D, V758L GLU GLUTAMIC ACID × 4 CYZ CYCLOTHIAZIDE × 4 ELECTRON MICROSCOPY cryo-EM buffer:pH 8 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 4.20 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

333 other PDB entries and 482 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GRIA2_RAT
Isoform P19491-2
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–817; UniProt 25–847 Author chain B; PDBConstruct 1–817; UniProt 25–847 Author chain C; PDBConstruct 1–817; UniProt 25–847 Author chain D; PDBConstruct 1–817; UniProt 25–847

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5weo

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5weo
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5weo
Deposition date deposition_date2017-07-10
Structure title titleActivated GluA2 complex bound to glutamate, cyclothiazide, and STZ in digitonin
Keywords keywordsIon channel, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier62.84
Radius of gyration Rg (electron density) rg_electron63.00
Forward intensity I(0) i02602820000.00
Molecular weight molecular_weight442610.0 kDa
Excluded volume excluded_volume559300 ų
Envelope volume envelope_volume884770 ų
Hydration-shell volume shell_volume121250 ų
Envelope diameter envelope_diameter204.5
Shell Rg shell_rg60.80
Envelope Rg envelope_rg60.93
Shape Rg shape_rg63.04
Total Rg total_rg62.78
Total atoms total_atoms31168
Residues n_residues3950
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax220.5
Rg (real space) rg_real62.96
Rg uncertainty (real space) rg_real_error2.18
I(0) (real space) i0_real2.6030e+09
I(0) uncertainty (real space) i0_real_error5.0610e+07
Rg (reciprocal space) rg_reciprocal62.70
I(0) (reciprocal space) i0_reciprocal2602000000.0000
Solution quality estimate total_estimate0.8611
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary70.6
Skewness Skewness skewness0.365
Kurtosis Kurtosis kurtosis-0.428
Angular range angular_range— – 0.1250 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha208000000.0000
Real-space data points n_real_points26
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.807; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.772

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)