9ovv

Heteromeric GluA1/A2-CNIH1 in the activated state, composite map of LBD-TMD

Method: ELECTRON MICROSCOPY Dmax: 154.9 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Isoform Flip of Glutamate receptor 1

Rattus norvegicus

UniProt P19490

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain A; UniProt 403–833 Chain C; UniProt 403–833 Not recorded Isoform Flip of Glutamate receptor 2 × 2 (P19491) Protein cornichon homolog 1 × 4 (O95406) GLU GLUTAMIC ACID × 4 POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 16 FWF N,N'-[biphenyl-4,4'-diyldi(2R)propane-2,1-diyl]dipropane-2-sulfonamide × 2 NA SODIUM ION × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 8;150 mM NaCl, 20 mM Tris-HCl pH 8.0, and 0.05% digitonin, 500 uM (R,R)-2b, 1 mM glutamate cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.76 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

32 other PDB entries and 34 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GRIA1_RAT
Isoform P19490-2
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–431; UniProt 403–833 Author chain C; PDBConstruct 1–431; UniProt 403–833

Isoform Flip of Glutamate receptor 2

Rattus norvegicus

UniProt P19491

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain B; UniProt 413–840 Chain D; UniProt 413–840 Not recorded Isoform Flip of Glutamate receptor 1 × 2 (P19490) Protein cornichon homolog 1 × 4 (O95406) GLU GLUTAMIC ACID × 4 POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 16 FWF N,N'-[biphenyl-4,4'-diyldi(2R)propane-2,1-diyl]dipropane-2-sulfonamide × 2 NA SODIUM ION × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 8;150 mM NaCl, 20 mM Tris-HCl pH 8.0, and 0.05% digitonin, 500 uM (R,R)-2b, 1 mM glutamate cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.76 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

333 other PDB entries and 482 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GRIA2_RAT
Isoform P19491-2
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–428; UniProt 413–840 Author chain D; PDBConstruct 1–428; UniProt 413–840

Protein cornichon homolog 1

OrganismNot specified

UniProt O95406

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain E; UniProt 2–143 Chain F; UniProt 2–143 Chain G; UniProt 2–143 Chain H; UniProt 2–143 Not recorded Isoform Flip of Glutamate receptor 1 × 2 (P19490) Isoform Flip of Glutamate receptor 2 × 2 (P19491) GLU GLUTAMIC ACID × 4 POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 16 FWF N,N'-[biphenyl-4,4'-diyldi(2R)propane-2,1-diyl]dipropane-2-sulfonamide × 2 NA SODIUM ION × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 8;150 mM NaCl, 20 mM Tris-HCl pH 8.0, and 0.05% digitonin, 500 uM (R,R)-2b, 1 mM glutamate cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.76 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name CNIH1_HUMAN
Isoform
PDB entities 3
Chains and sequence ranges Author chain E; PDBConstruct 1–142; UniProt 2–143 Author chain F; PDBConstruct 1–142; UniProt 2–143 Author chain G; PDBConstruct 1–142; UniProt 2–143 Author chain H; PDBConstruct 1–142; UniProt 2–143

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9ovv

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9ovv
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9ovv
Deposition date deposition_date2025-05-31
Structure title titleHeteromeric GluA1/A2-CNIH1 in the activated state, composite map of LBD-TMD
Keywords keywordsGluA1A2-CNIH2 heterotetramer active iGluR, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier48.03
Radius of gyration Rg (electron density) rg_electron46.89
Forward intensity I(0) i0788446000.00
Molecular weight molecular_weight259600.0 kDa
Excluded volume excluded_volume335710 ų
Envelope volume envelope_volume472420 ų
Hydration-shell volume shell_volume82920 ų
Envelope diameter envelope_diameter156.6
Shell Rg shell_rg52.41
Envelope Rg envelope_rg45.80
Shape Rg shape_rg46.91
Total Rg total_rg47.06
Total atoms total_atoms35769
Residues n_residues2182
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax154.9
Rg (real space) rg_real47.81
Rg uncertainty (real space) rg_real_error1.16
I(0) (real space) i0_real7.8840e+08
I(0) uncertainty (real space) i0_real_error1.2520e+07
Rg (reciprocal space) rg_reciprocal48.03
I(0) (reciprocal space) i0_reciprocal788700000.0000
Solution quality estimate total_estimate0.9012
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary61.0
Skewness Skewness skewness0.138
Kurtosis Kurtosis kurtosis-0.587
Angular range angular_range— – 0.1650 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha61520000.0000
Real-space data points n_real_points34
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.931; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.989; Smooth: 0.929

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

8. Citations (1)

9. Files and Curves (10)