9i8p

Human beta-cardiac myosin wild type motor domain in the pre-powerstroke state, MgADP.VO4 form

Method: X-RAY DIFFRACTION Dmax: 104.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Myosin-7

Homo sapiens

UniProt P12883

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–808 Non-standard monomer:Yes (specific site not provided by mmCIF) MG MAGNESIUM ION × 1 ADP ADENOSINE-5'-DIPHOSPHATE × 1 VO4 VANADATE ION × 1 EDO 1,2-ETHANEDIOL × 2 SO4 SULFATE ION × 2 GOL GLYCEROL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;25 % PEG 3350 w:v, 0.25 M lithium sulfate, 0.1M Tris-HCl, 2 mM Mg.ADP.Vanadate. Optimal crystals were obtained using the micro-seeding technique. Resolution 2.60 Å R-free 0.245

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

40 other PDB entries and 55 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MYH7_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–808; UniProt 1–808

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9i8p

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9i8p
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9i8p
Deposition date deposition_date2025-02-05
最后修订 last_revision2025-10-22
Structure title titleHuman beta-cardiac myosin wild type motor domain in the pre-powerstroke state, MgADP.VO4 form
Keywords keywordsCardiac myosin, Myosin II, muscle contraction, hypertrophic cardiomyopathy, thick filament, sarcomere, MOTOR PROTEIN; MOTOR PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier29.11
Radius of gyration Rg (electron density) rg_electron28.53
Forward intensity I(0) i0104259000.00
Molecular weight molecular_weight81590.0 kDa
Excluded volume excluded_volume102460 ų
Envelope volume envelope_volume127920 ų
Hydration-shell volume shell_volume37165 ų
Envelope diameter envelope_diameter104.2
Shell Rg shell_rg35.81
Envelope Rg envelope_rg29.25
Shape Rg shape_rg28.52
Total Rg total_rg29.22
Total atoms total_atoms5736
Residues n_residues704
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax104.8
Rg (real space) rg_real29.15
Rg uncertainty (real space) rg_real_error1.02
I(0) (real space) i0_real1.0430e+08
I(0) uncertainty (real space) i0_real_error1.5790e+06
Rg (reciprocal space) rg_reciprocal29.13
I(0) (reciprocal space) i0_reciprocal104300000.0000
Solution quality estimate total_estimate0.7669
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary33.0
Skewness Skewness skewness0.464
Kurtosis Kurtosis kurtosis-0.081
Angular range angular_range— – 0.2700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha27480000.0000
Real-space data points n_real_points55
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.665; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.973; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (8)

8. Citations (1)

9. Files and Curves (10)