5fmf

the P-lobe of RNA polymerase II pre-initiation complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA REPAIR HELICASE RAD25, SSL2

OrganismNot specified

UniProt Q00578

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RAD25_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1; PDBConstruct 1–492; UniProt 294–785

TRANSCRIPTION ELONGATION FACTOR S-II, DST1

OrganismNot specified

UniProt P07273

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TFS2_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 2; PDBConstruct 1–174; UniProt 136–309

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1

OrganismNot specified

UniProt P04050

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB1_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A; PDBConstruct 1–1733; UniProt 1–1733

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2

OrganismNot specified

UniProt P08518

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB2_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain B; PDBConstruct 1–1224; UniProt 1–1224

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3

OrganismNot specified

UniProt P16370

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB3_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain C; PDBConstruct 1–266; UniProt 3–268

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5

OrganismNot specified

UniProt P20434

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB1_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain E; PDBConstruct 1–214; UniProt 2–215

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6

OrganismNot specified

UniProt P20435

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB2_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain F; PDBConstruct 1–84; UniProt 72–155

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7

OrganismNot specified

UniProt P34087

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB7_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain G; PDBConstruct 1–171; UniProt 1–171

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8

OrganismNot specified

UniProt P20436

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB3_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain H; PDBConstruct 1–146; UniProt 1–146

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9

OrganismNot specified

UniProt P27999

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB9_YEAST
Isoform —
PDB entities 11
Chains and sequence ranges Author chain I; PDBConstruct 1–119; UniProt 2–120

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10

OrganismNot specified

UniProt P22139

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB5_YEAST
Isoform —
PDB entities 12
Chains and sequence ranges Author chain J; PDBConstruct 1–65; UniProt 1–65

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11

OrganismNot specified

UniProt P38902

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB11_YEAST
Isoform —
PDB entities 13
Chains and sequence ranges Author chain K; PDBConstruct 1–115; UniProt 1–115

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12

OrganismNot specified

UniProt P40422

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB4_YEAST
Isoform —
PDB entities 14
Chains and sequence ranges Author chain L; PDBConstruct 1–46; UniProt 25–70

TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2

OrganismNot specified

UniProt P32774

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2AG_YEAST
Isoform —
PDB entities 17
Chains and sequence ranges Author chain O; PDBConstruct 1–122; UniProt 1–122

TRANSCRIPTION INITIATION FACTOR IIB, SUA7

OrganismNot specified

UniProt P29055

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2B_YEAST
Isoform —
PDB entities 18
Chains and sequence ranges Author chain P; PDBConstruct 1–345; UniProt 1–345

TATA-BOX-BINDING PROTEIN, TBP

OrganismNot specified

UniProt P13393

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TBP_YEAST
Isoform —
PDB entities 19
Chains and sequence ranges Author chain Q; PDBConstruct 1–180; UniProt 61–240

TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1

OrganismNot specified

UniProt P36100

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2EA_YEAST
Isoform —
PDB entities 20
Chains and sequence ranges Author chain R; PDBConstruct 1–160; UniProt 1–160

TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2

OrganismNot specified

UniProt P36145

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2EB_YEAST
Isoform —
PDB entities 21
Chains and sequence ranges Author chain S; PDBConstruct 1–123; UniProt 125–247

TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2

OrganismNot specified

UniProt P41896

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2FB_YEAST
Isoform —
PDB entities 24
Chains and sequence ranges Author chain V; PDBConstruct 1–89; UniProt 54–142

RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2

OrganismNot specified

UniProt Q02939

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TFB2_YEAST
Isoform —
PDB entities 25
Chains and sequence ranges Author chain W; PDBConstruct 1–62; UniProt 447–508

RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5

OrganismNot specified

UniProt Q3E7C1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) DNA REPAIR HELICASE RAD3 × 1 (P06839) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TFB5_YEAST
Isoform —
PDB entities 26
Chains and sequence ranges Author chain X; PDBConstruct 1–63; UniProt 2–64

DNA REPAIR HELICASE RAD3

OrganismNot specified

UniProt P06839

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 25 DNA 2 DNA REPAIR HELICASE RAD25, SSL2 × 1 (Q00578) TRANSCRIPTION ELONGATION FACTOR S-II, DST1 × 1 (P07273) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (P04050) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (P08518) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (P16370) RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 × 1 (P20434) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 × 1 (P20435) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (P34087) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 × 1 (P20436) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 × 1 (P27999) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 × 1 (P22139) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 × 1 (P38902) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 × 1 (P40422) RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 × 1 NON-TEMPLATE STRAND DNA × 1 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 × 1 (P32774) TRANSCRIPTION INITIATION FACTOR IIB, SUA7 × 1 (P29055) TATA-BOX-BINDING PROTEIN, TBP × 1 (P13393) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 × 1 (P36100) TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 × 1 (P36145) TEMPLATE STRAND DNA × 1 RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 × 1 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 × 1 (P41896) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 × 1 (Q02939) RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 × 1 (Q3E7C1) MAGNESIUM ION × 2 ZINC ION × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RAD3_YEAST
Isoform —
PDB entities 27
Chains and sequence ranges Author chain Y; PDBConstruct 1–778; UniProt 1–778

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5fmf
Deposition date deposition_date2015-11-03
Structure title titlethe P-lobe of RNA polymerase II pre-initiation complex
Keywords keywordsTRANSCRIPTION, PRE-INITIATION COMPLEX, RNA POLYMERASE, TFIIE, TFIIH, TFIIB, TBP, TFIIF, PROTEIN; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5fmf__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5fmf__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5fmf__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)70.92 Å
Rg (electron density)70.93 Å
Total Rg71.36 Å
Atom count55259
Residues6612
Excluded volume980060 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5fmf__assembly_1__model_1 27-meric (27) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (29)

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7. Citations (1)