6haw

Crystal structure of bovine cytochrome bc1 in complex with 2-pyrazolyl quinolone inhibitor WDH2G7

Method: X-RAY DIFFRACTION Dmax: 160.9 Å Quality: GOOD

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Cytochrome b-c1 complex subunit 1, mitochondrial

物种未注明

UniProt P31800

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 A; UniProt 36–479 未记录 Cytochrome b-c1 complex subunit 2, mitochondrial × 1 (P23004) Cytochrome b × 1 (P00157) Cytochrome c1, heme protein, mitochondrial × 1 (P00125) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 7 × 1 (P00129) Cytochrome b-c1 complex subunit 8 × 1 (P13271) Cytochrome b-c1 complex subunit 6, mitochondrial × 1 (P00126) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 9 × 1 (P00130) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 46 个其他 PDB 条目、51 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 QCR1_BOVIN
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–438; UniProt 36–479

Cytochrome b-c1 complex subunit 2, mitochondrial

物种未注明

UniProt P23004

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 B; UniProt 36–453 未记录 Cytochrome b-c1 complex subunit 1, mitochondrial × 1 (P31800) Cytochrome b × 1 (P00157) Cytochrome c1, heme protein, mitochondrial × 1 (P00125) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 7 × 1 (P00129) Cytochrome b-c1 complex subunit 8 × 1 (P13271) Cytochrome b-c1 complex subunit 6, mitochondrial × 1 (P00126) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 9 × 1 (P00130) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 47 个其他 PDB 条目、52 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 QCR2_BOVIN
Isoform
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–387; UniProt 36–453

Cytochrome b

物种未注明

UniProt P00157

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 C; UniProt 2–379 未记录 Cytochrome b-c1 complex subunit 1, mitochondrial × 1 (P31800) Cytochrome b-c1 complex subunit 2, mitochondrial × 1 (P23004) Cytochrome c1, heme protein, mitochondrial × 1 (P00125) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 7 × 1 (P00129) Cytochrome b-c1 complex subunit 8 × 1 (P13271) Cytochrome b-c1 complex subunit 6, mitochondrial × 1 (P00126) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 9 × 1 (P00130) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 45 个其他 PDB 条目、50 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 CYB_BOVIN
Isoform
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–378; UniProt 2–379

Cytochrome c1, heme protein, mitochondrial

物种未注明

UniProt P00125

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 D; UniProt 86–324 未记录 Cytochrome b-c1 complex subunit 1, mitochondrial × 1 (P31800) Cytochrome b-c1 complex subunit 2, mitochondrial × 1 (P23004) Cytochrome b × 1 (P00157) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 7 × 1 (P00129) Cytochrome b-c1 complex subunit 8 × 1 (P13271) Cytochrome b-c1 complex subunit 6, mitochondrial × 1 (P00126) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 9 × 1 (P00130) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 47 个其他 PDB 条目、52 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 CY1_BOVIN
Isoform
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–239; UniProt 86–324

Cytochrome b-c1 complex subunit Rieske, mitochondrial

物种未注明

UniProt P13272

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 E; UniProt 79–274 链 I; UniProt 33–78 未记录 Cytochrome b-c1 complex subunit 1, mitochondrial × 1 (P31800) Cytochrome b-c1 complex subunit 2, mitochondrial × 1 (P23004) Cytochrome b × 1 (P00157) Cytochrome c1, heme protein, mitochondrial × 1 (P00125) Cytochrome b-c1 complex subunit 7 × 1 (P00129) Cytochrome b-c1 complex subunit 8 × 1 (P13271) Cytochrome b-c1 complex subunit 6, mitochondrial × 1 (P00126) Cytochrome b-c1 complex subunit 9 × 1 (P00130) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 48 个其他 PDB 条目、53 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 UCRI_BOVIN
Isoform
PDB实体 5, 9
链与序列区间 作者链 E; PDB构建体 1–196; UniProt 79–274 作者链 I; PDB构建体 1–46; UniProt 33–78

Cytochrome b-c1 complex subunit 7

物种未注明

UniProt P00129

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 F; UniProt 12–110 未记录 Cytochrome b-c1 complex subunit 1, mitochondrial × 1 (P31800) Cytochrome b-c1 complex subunit 2, mitochondrial × 1 (P23004) Cytochrome b × 1 (P00157) Cytochrome c1, heme protein, mitochondrial × 1 (P00125) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 8 × 1 (P13271) Cytochrome b-c1 complex subunit 6, mitochondrial × 1 (P00126) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 9 × 1 (P00130) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 45 个其他 PDB 条目、50 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 QCR7_BOVIN
Isoform
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–99; UniProt 12–110

Cytochrome b-c1 complex subunit 8

物种未注明

UniProt P13271

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 G; UniProt 3–76 未记录 Cytochrome b-c1 complex subunit 1, mitochondrial × 1 (P31800) Cytochrome b-c1 complex subunit 2, mitochondrial × 1 (P23004) Cytochrome b × 1 (P00157) Cytochrome c1, heme protein, mitochondrial × 1 (P00125) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 7 × 1 (P00129) Cytochrome b-c1 complex subunit 6, mitochondrial × 1 (P00126) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 9 × 1 (P00130) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 47 个其他 PDB 条目、52 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 QCR8_BOVIN
Isoform
PDB实体 7
链与序列区间 作者链 G; PDB构建体 1–74; UniProt 3–76

Cytochrome b-c1 complex subunit 6, mitochondrial

物种未注明

UniProt P00126

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 H; UniProt 27–90 未记录 Cytochrome b-c1 complex subunit 1, mitochondrial × 1 (P31800) Cytochrome b-c1 complex subunit 2, mitochondrial × 1 (P23004) Cytochrome b × 1 (P00157) Cytochrome c1, heme protein, mitochondrial × 1 (P00125) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 7 × 1 (P00129) Cytochrome b-c1 complex subunit 8 × 1 (P13271) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 9 × 1 (P00130) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 46 个其他 PDB 条目、51 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 QCR6_BOVIN
Isoform
PDB实体 8
链与序列区间 作者链 H; PDB构建体 1–64; UniProt 27–90

Cytochrome b-c1 complex subunit 9

物种未注明

UniProt P00130

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 10 PDB 声明:decameric(10) 与蛋白拷贝数一致 链 J; UniProt 3–61 未记录 Cytochrome b-c1 complex subunit 1, mitochondrial × 1 (P31800) Cytochrome b-c1 complex subunit 2, mitochondrial × 1 (P23004) Cytochrome b × 1 (P00157) Cytochrome c1, heme protein, mitochondrial × 1 (P00125) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) Cytochrome b-c1 complex subunit 7 × 1 (P00129) Cytochrome b-c1 complex subunit 8 × 1 (P13271) Cytochrome b-c1 complex subunit 6, mitochondrial × 1 (P00126) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 1 (P13272) 6PE 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE × 1 PGE TRIETHYLENE GLYCOL × 4 PO4 PHOSPHATE ION × 11 CDL CARDIOLIPIN × 4 PG4 TETRAETHYLENE GLYCOL × 1 PX6 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 LMT DODECYL-BETA-D-MALTOSIDE × 1 PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine × 2 FX2 7-methoxy-3-methyl-2-[1-[[4-(trifluoromethyloxy)phenyl]methyl]pyrazol-4-yl]-3~{H}-quinolin-4-one × 1 HEC HEME C × 1 FES FE2/S2 (INORGANIC) CLUSTER × 1 PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 1 X-RAY DIFFRACTION X-ray结晶条件:VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;Protein 40mg/mL with 1.6% HECAMEG; reservoir solution 50mM KPi pH 6.8, 100mM NaCl, 3mM NaN3, 10-12% PEG4000. 分辨率 3.45 Å R-free 0.242

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 47 个其他 PDB 条目、52 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 QCR9_BOVIN
Isoform
PDB实体 10
链与序列区间 作者链 J; PDB构建体 1–59; UniProt 3–61

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

SAXS 散射曲线 SAXS Profile

SAXS profile for 6haw

P(r) 距离分布 P(r) Distribution

P(r) distribution for 6haw
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2. 结构基本信息 2. Structure Basics

条目编号 entry_id6haw
沉积日期 deposition_date2018-08-08
结构标题 titleCrystal structure of bovine cytochrome bc1 in complex with 2-pyrazolyl quinolone inhibitor WDH2G7
关键词 keywordscytochrome bc1, malaria, ELECTRON TRANSPORT; ELECTRON TRANSPORT
实验方法 methodX-RAY DIFFRACTION

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier49.45
回转半径 Rg (电子) rg_electron49.50
零角强度 I(0) i0763362000.00
分子量 molecular_weight228160.0 kDa
排除体积 excluded_volume284860 ų
包络体积 envelope_volume413740 ų
水化壳体积 shell_volume71434 ų
包络直径 envelope_diameter173.8
壳层 Rg shell_rg50.57
包络 Rg envelope_rg49.54
形状 Rg shape_rg49.53
总 Rg total_rg49.44
总原子数 total_atoms16032
残基数 n_residues2006
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax160.9
Rg (实空间) rg_real49.87
Rg 误差 (实空间) rg_real_error1.39
I(0) (实空间) i0_real7.6340e+08
I(0) 误差 (实空间) i0_real_error1.4160e+07
Rg (倒空间) rg_reciprocal49.45
I(0) (倒空间) i0_reciprocal762900000.0000
解质量估计 total_estimate0.8212
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks1
主峰位置 r_peak_primary45.3
偏度 Skewness skewness0.439
峰度 Kurtosis kurtosis-0.579
角度范围 angular_range— – 0.1600 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha78750000.0000
实空间数据点数 n_real_points33
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.857; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.926; Smooth: 0.173

5. 晶体学与实验 5. Crystallography & Experiment

6. 实体与聚合物信息 Entities & Polymers (24)

7. 折叠分类 (SCOP + CATH) 14 domains

CATH v4.4 (14 domains)

结构域编号 domain_id6hawA01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Metalloenzyme, LuxS/M16 peptidase-like
结构域编号 domain_id6hawA02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Metalloenzyme, LuxS/M16 peptidase-like
结构域编号 domain_id6hawB01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Metalloenzyme, LuxS/M16 peptidase-like
结构域编号 domain_id6hawB02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Metalloenzyme, LuxS/M16 peptidase-like
结构域编号 domain_id6hawC00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology810 — Cytochrome Bc1 Complex; Chain C
同源超家族 H-superfamily homologous superfamily10 — Cytochrome Bc1 Complex; Chain C
结构域编号 domain_id6hawD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology760 — Cytochrome Bc1 Complex; Chain D, domain 2
同源超家族 H-superfamily homologous superfamily10 — Cytochrome c-like domain
结构域编号 domain_id6hawD02
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily100 — Cytochrome c1, transmembrane anchor, C-terminal
结构域编号 domain_id6hawE01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily270 — Ubiquinol cytochrome reductase, transmembrane domain
结构域编号 domain_id6hawE02
类 Class class2 — Mainly Beta
架构 Architecture architecture102 — 3-layer Sandwich
拓扑 Topology topology10 — Rieske Iron-sulfur Protein
同源超家族 H-superfamily homologous superfamily10 — Rieske [2Fe-2S] iron-sulphur domain
结构域编号 domain_id6hawF00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1090 — Cytochrome Bc1 Complex; Chain F
同源超家族 H-superfamily homologous superfamily10 — Cytochrome b-c1 complex subunit 7
结构域编号 domain_id6hawG00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily210 — Cytochrome b-c1 complex subunit 8
结构域编号 domain_id6hawH00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily20 — Ubiquinol-cytochrome C reductase hinge domain
结构域编号 domain_id6hawI00
类 Class class2 — Mainly Beta
架构 Architecture architecture10 — Ribbon
拓扑 Topology topology210 — Cytochrome Bc1 Complex; Chain I
同源超家族 H-superfamily homologous superfamily10 — Cytochrome Bc1 Complex; Chain I
结构域编号 domain_id6hawJ00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
同源超家族 H-superfamily homologous superfamily260 — Cytochrome b-c1 complex subunit 9

8. 引用文献 (1)

9. 文件与曲线 (10)