当前蛋白身份:P02309 重新检索
本组结构的主要差异维度
构建体不同 突变/修饰不同 组装状态不同 配体/离子不同 实验方法不同 实验环境不同 结构质量指标不同

差异标签只比较当前检索结果;所有PDB和assembly原始记录仍分别保留。

相关结构差异明细

一行代表一个 PDB 条目中的一个 biological assembly;同一蛋白的多个单体会分别列出。

PDB 条目 Assembly / 聚集状态 构建体 突变与修饰 配体、离子与非聚合物 实验方法 实验环境 结构质量
1E6I Bromodomain from GCN5 complexed with acetylated H4 peptide 提交 2000-08-18 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 P 16–30(15 aa) 片段:ACETYLATED TAIL, RESIDUES 16-30
非标准单体:是(mmCIF未提供具体位点) 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 pH 7.5;2.2M AMMONIUM SULPHATE, 20% V/V GLYCEROL, 4MM DITHIOTHREITOL, 100 MM HEPES PH 7.5, 125MM NACL 5:1 PEPTIDE:PROTEIN
分辨率 1.87 Å R-free 0.209
1ID3 CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS 提交 2001-04-03 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 8 PDB 声明:decameric(10) 与全部聚合物一致
链 B 1–102(102 aa)
链 F 1–102(102 aa)
未记录 MN MANGANESE (II) ION × 17 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 6;292 K;Manganese chloride, Potassium chloride, cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
分辨率 3.10 Å R-free 0.292
1Q1A Structure of the yeast Hst2 protein deacetylase in ternary complex with 2'-O-acetyl ADP ribose and histone peptide 提交 2003-07-18 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 12–21(10 aa) 片段:Residues 12-21
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 OAD 2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 5.6;294 K;PEG 4K, , pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 294K
分辨率 1.50 Å R-free 0.210
1SZC Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD+-dependent Sir2 histone/protein deacetylases 提交 2004-04-05 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 12–21(10 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 CL CHLORIDE ION × 1 CNA CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1 GOL GLYCEROL × 4 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 6.5;293 K;Ammonium Sulfate, Bis-tris, pH 6.5, VAPOR DIFFUSION, temperature 293K
分辨率 1.75 Å R-free 0.239
1SZC Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD+-dependent Sir2 histone/protein deacetylases 提交 2004-04-05 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 12–21(10 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 2 CL CHLORIDE ION × 2 CNA CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 2 GOL GLYCEROL × 8 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 6.5;293 K;Ammonium Sulfate, Bis-tris, pH 6.5, VAPOR DIFFUSION, temperature 293K
分辨率 1.75 Å R-free 0.239
1SZD Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD+-dependent Sir2 histone/protein deacetylases 提交 2004-04-05 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 12–21(10 aa)
非标准单体:是(mmCIF未提供具体位点) CL CHLORIDE ION × 1 ZN ZINC ION × 1 APR ADENOSINE-5-DIPHOSPHORIBOSE × 1 GOL GLYCEROL × 3 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 6.5;293 K;Ammonium Sulfate, Bis-Tris, pH 6.5, VAPOR DIFFUSION, temperature 293K
分辨率 1.50 Å R-free 0.230
1SZD Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD+-dependent Sir2 histone/protein deacetylases 提交 2004-04-05 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 12–21(10 aa)
非标准单体:是(mmCIF未提供具体位点) CL CHLORIDE ION × 2 ZN ZINC ION × 2 APR ADENOSINE-5-DIPHOSPHORIBOSE × 2 GOL GLYCEROL × 6 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION;pH 6.5;293 K;Ammonium Sulfate, Bis-Tris, pH 6.5, VAPOR DIFFUSION, temperature 293K
分辨率 1.50 Å R-free 0.230
2E3K Crystal structure of the human Brd2 second bromodomain in complexed with the acetylated histone H4 peptide 提交 2006-11-27 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 3 PDB 声明:trimeric(3) 与蛋白数一致
链 Q 1–15(15 aa) 片段:N-terminal H4 di-acetylated tail
非标准单体:是(mmCIF未提供具体位点) 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 6.5;298 K;PEG4000, Ammonium Acetate,, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
分辨率 2.30 Å R-free 0.268
2E3K Crystal structure of the human Brd2 second bromodomain in complexed with the acetylated histone H4 peptide 提交 2006-11-27 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 3 PDB 声明:trimeric(3) 与蛋白数一致
链 R 1–15(15 aa) 片段:N-terminal H4 di-acetylated tail
非标准单体:是(mmCIF未提供具体位点) 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 6.5;298 K;PEG4000, Ammonium Acetate,, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
分辨率 2.30 Å R-free 0.268
2H2H The Structural basis of sirtuin substrate specificity 提交 2006-05-18 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 75–85(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 9.5;293.15 K;20 % PEG, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K, pH 9.5
分辨率 2.20 Å R-free 0.239
2L5A Structural basis for recognition of centromere specific histone H3 variant by nonhistone Scm3 提交 2010-10-28 Assembly 1 信息不足 单体;蛋白 × 1 PDB 声明:monomeric(1) 与蛋白数一致
链 A 42–103(62 aa) 片段:Cse4(151-228), Scm3(93-172), H4(42-103)
未记录 未记录非水小分子 SOLUTION NMR
NMR测量条件 pH 5.4;308 K;离子强度(mmCIF原始值)0.00;压力 ambient
NMR样品组成 0.8-1.0 mM [U-100% 15N] scCSH-1, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR样品组成 0.8-0.85 mM [U-100% 15N] scCSH-2, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR样品组成 0.8-0.85 mM [U-13C methyl; U-15N; U-2H] scCSH-3, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR样品组成 0.8-0.85 mM [U-13C ; U-15N; 35%-2H] scCSH-4, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR样品组成 0.8-0.85 mM [U-13C ; U-15N] scCSH-5, 100% D2O | 100% D2O
NMR样品组成 0.8-0.85 mM scCSH-6, 100% D2O | 100% D2O
分辨率未提供
2QQF Hst2 bound to ADP-HPD and Acetylated histone H4 提交 2007-07-26 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 13–23(11 aa) 片段:SEQUENCE DATABASE RESIDUES 13-23
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 2 A1R 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 5.6;298 K;2.0 M Ammonium Sulfate, 100 mM Na citrate and 200 mM K/Na tartrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
分辨率 2.00 Å R-free 0.253
2QQF Hst2 bound to ADP-HPD and Acetylated histone H4 提交 2007-07-26 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 13–23(11 aa) 片段:SEQUENCE DATABASE RESIDUES 13-23
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 A1R 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 5.6;298 K;2.0 M Ammonium Sulfate, 100 mM Na citrate and 200 mM K/Na tartrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
分辨率 2.00 Å R-free 0.253
2QQG Hst2 bound to ADP-HPD, acetyllated histone H4 and nicotinamide 提交 2007-07-26 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 13–23(11 aa) 片段:sequence database residues 13-23
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 A1R 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE × 1 NCA NICOTINAMIDE × 1 X-RAY DIFFRACTION
X-ray结晶条件 pH 5.6;298 K;2.0 M Ammonium Sulfate, 100 mM Na citrate, pH 5.6, 200 mM K/Na tartrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 5.60
分辨率 2.05 Å R-free 0.245
2QQG Hst2 bound to ADP-HPD, acetyllated histone H4 and nicotinamide 提交 2007-07-26 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 B 13–23(11 aa) 片段:sequence database residues 13-23
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 2 A1R 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE × 2 NCA NICOTINAMIDE × 2 X-RAY DIFFRACTION
X-ray结晶条件 pH 5.6;298 K;2.0 M Ammonium Sulfate, 100 mM Na citrate, pH 5.6, 200 mM K/Na tartrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 5.60
分辨率 2.05 Å R-free 0.245
3TO6 Crystal structure of yeast Esa1 HAT domain complexed with H4K16CoA bisubstrate inhibitor 提交 2011-09-04 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 6 PDB 声明:hexameric(6) 与蛋白数一致
链 B 12–23(12 aa) 片段:UNP residues 12-23
未记录 CMC CARBOXYMETHYL COENZYME *A × 3 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M sodium cacodylate, 1.6 M ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
分辨率 2.10 Å R-free 0.232
4JJN Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome 提交 2013-03-08 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 10 PDB 声明:dodecameric(12) 与全部聚合物一致
链 B 2–103(102 aa)
链 F 2–103(102 aa)
未记录 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;pH 7.5;277 K;0.05 M sodium cacodylate, 32% 2-methyl-2,4-pentanediol (MPD), pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
分辨率 3.09 Å R-free 0.255
4KUD Crystal structure of N-terminal acetylated Sir3 BAH domain D205N mutant in complex with yeast nucleosome core particle 提交 2013-05-22 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 10 PDB 声明:dodecameric(12) 与全部聚合物一致
链 B 1–103(103 aa)
链 F 1–103(103 aa)
突变:S2A 突变:S2A 未记录非水小分子 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 4.8;289 K;16% PEG 400, 0.1M KCl, 0.01M CaCl2, 0.05M sodium citrate(pH4.8), VAPOR DIFFUSION, HANGING DROP, temperature 289K
分辨率 3.20 Å R-free 0.237
4PSX Crystal structure of histone acetyltransferase complex 提交 2014-03-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 C 2–49(48 aa) 片段:UNP residues 2-49
突变:I21V COA COENZYME A × 1 SO4 SULFATE ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.2M potassium sodium tartrate, 20%(w/v) polyethylene glycol 3,350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
分辨率 2.51 Å R-free 0.223
4PSX Crystal structure of histone acetyltransferase complex 提交 2014-03-08 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 F 2–49(48 aa) 片段:UNP residues 2-49
突变:I21V COA COENZYME A × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.2M potassium sodium tartrate, 20%(w/v) polyethylene glycol 3,350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
分辨率 2.51 Å R-free 0.223
4TWI The structure of Sir2Af1 bound to a succinylated histone peptide 提交 2014-06-30 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 9–21(13 aa) 片段:UNP residues 9-21
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 GOL GLYCEROL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris pH 8.5, 200 mM MgCl2, and 20% (w/v) PEG 8,000
分辨率 1.79 Å R-free 0.221
4TWJ The structure of Sir2Af2 bound to a myristoylated histone peptide 提交 2014-06-30 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 9–21(13 aa) 片段:UNP residues 9-21
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 ACT ACETATE ION × 5 GOL GLYCEROL × 2 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 4.8;293 K;0.1 M Na-acetate pH 4.8, 14-18% (v/v) 2-propanol, and 14-15% (w/v) PEG 6,000
分辨率 1.65 Å R-free 0.205
5ZBA Crystal structure of Rtt109-Asf1-H3-H4-CoA complex 提交 2018-02-10 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 D 1–103(103 aa)
未记录 COA COENZYME A × 1 IOD IODIDE ION × 37 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;100mM sodium citrate, pH 5.0, 22% PEG 1500, 400mM sodium iodide
分辨率 3.50 Å R-free 0.294
5ZBB Crystal structure of Rtt109-Asf1-H3-H4 complex 提交 2018-02-10 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric(4) 与蛋白数一致
链 D 1–103(103 aa)
未记录 IOD IODIDE ION × 23 PEG DI(HYDROXYETHYL)ETHER × 1 GOL GLYCEROL × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;100mM sodium citrate, pH 5.0, 22% PEG 1500, 400mM sodium iodide
分辨率 3.60 Å R-free 0.264
6GEJ Chromatin remodeller-nucleosome complex at 3.6 A resolution. 提交 2018-04-26 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 18 PDB 声明:eicosameric(20) 与全部聚合物一致
链 C 1–103(103 aa)
链 D 1–103(103 aa)
未记录 ADP ADENOSINE-5'-DIPHOSPHATE × 8 BEF BERYLLIUM TRIFLUORIDE ION × 2 MG MAGNESIUM ION × 8 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.60 Å
6GEN Chromatin remodeller-nucleosome complex at 4.5 A resolution. 提交 2018-04-27 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 18 PDB 声明:eicosameric(20) 与全部聚合物一致
链 C 1–103(103 aa)
链 D 1–103(103 aa)
未记录 ADP ADENOSINE-5'-DIPHOSPHATE × 8 BEF BERYLLIUM TRIFLUORIDE ION × 2 MG MAGNESIUM ION × 8 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.60 Å
6QLD Structure of inner kinetochore CCAN-Cenp-A complex 提交 2019-01-31 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 20 PDB 声明:22-meric(22) 与全部聚合物一致
链 b 25–103(79 aa)
链 f 25–103(79 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 8
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 4.15 Å
6RXJ Crystal structure of CobB wt in complex with H4K16-Acetyl peptide 提交 2019-06-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 13–22(10 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.1M Bis-Tris, 0.03 M HCl, 22% PEG3350
分辨率 1.60 Å R-free 0.188
6RXJ Crystal structure of CobB wt in complex with H4K16-Acetyl peptide 提交 2019-06-08 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 D 13–22(10 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.1M Bis-Tris, 0.03 M HCl, 22% PEG3350
分辨率 1.60 Å R-free 0.188
6RXK Crystal structure of CobB wt in complex with H4K16-Butyryl peptide 提交 2019-06-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 13–23(11 aa) 片段:H4K16Bu
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;22% PEG 3350 0.1M Bis-Tris 0.03 mM HCL
分辨率 1.35 Å R-free 0.188
6RXL Crystal structure of CobB wt in complex with H4K16-Crotonyl peptide 提交 2019-06-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 B 13–23(11 aa) 片段:H4K16Ac
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.1 M Bis-Tris 22% PEG 3350 0.03 M HCl
分辨率 2.30 Å R-free 0.250
6RXM Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16-Acetyl peptide 提交 2019-06-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 13–23(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 M Bis-Tris, 0.03 HCl, 23% PEG3350
分辨率 1.92 Å R-free 0.242
6RXM Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16-Acetyl peptide 提交 2019-06-08 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 H 13–23(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 M Bis-Tris, 0.03 HCl, 23% PEG3350
分辨率 1.92 Å R-free 0.242
6RXM Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16-Acetyl peptide 提交 2019-06-08 Assembly 3 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 I 13–23(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 M Bis-Tris, 0.03 HCl, 23% PEG3350
分辨率 1.92 Å R-free 0.242
6RXM Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16-Acetyl peptide 提交 2019-06-08 Assembly 4 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 J 13–23(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 M Bis-Tris, 0.03 HCl, 23% PEG3350
分辨率 1.92 Å R-free 0.242
6RXM Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16-Acetyl peptide 提交 2019-06-08 Assembly 5 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 K 13–23(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 M Bis-Tris, 0.03 HCl, 23% PEG3350
分辨率 1.92 Å R-free 0.242
6RXM Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16-Acetyl peptide 提交 2019-06-08 Assembly 6 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 L 13–23(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 M Bis-Tris, 0.03 HCl, 23% PEG3350
分辨率 1.92 Å R-free 0.242
6RXO Crystal structure of CobB Ac2 (A76G, I131C, V162A) in complex with H4K16-Buturyl peptide 提交 2019-06-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 13–23(11 aa) 片段:H4K16Ac
突变:K16ALY 非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.1M Bis-Tris, 0.03 M HCl, 23% PEG3350
分辨率 1.95 Å R-free 0.215
6RXO Crystal structure of CobB Ac2 (A76G, I131C, V162A) in complex with H4K16-Buturyl peptide 提交 2019-06-08 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 D 13–23(11 aa) 片段:H4K16Ac
突变:K16ALY 非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.1M Bis-Tris, 0.03 M HCl, 23% PEG3350
分辨率 1.95 Å R-free 0.215
6RXP Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with H4K16-Crotonyl peptide 提交 2019-06-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 C 13–23(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.1M Bis-Tris, 0.03 M HCl, 23% PEG3350
分辨率 1.80 Å R-free 0.234
6RXP Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with H4K16-Crotonyl peptide 提交 2019-06-08 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 D 13–23(11 aa)
非标准单体:是(mmCIF未提供具体位点) ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;0.1M Bis-Tris, 0.03 M HCl, 23% PEG3350
分辨率 1.80 Å R-free 0.234
6RXQ Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after soaking 提交 2019-06-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 13–23(11 aa)
未记录 KMQ [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 mM Bis-Tris, 0.03M HCl, 23% PEG3350, soaked 36h with 1 mM NAD+
分辨率 1.70 Å R-free 0.228
6RXQ Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after soaking 提交 2019-06-08 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 F 13–23(11 aa)
未记录 KMQ [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 mM Bis-Tris, 0.03M HCl, 23% PEG3350, soaked 36h with 1 mM NAD+
分辨率 1.70 Å R-free 0.228
6RXQ Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after soaking 提交 2019-06-08 Assembly 3 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 13–23(11 aa)
未记录 KMQ [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 mM Bis-Tris, 0.03M HCl, 23% PEG3350, soaked 36h with 1 mM NAD+
分辨率 1.70 Å R-free 0.228
6RXQ Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after soaking 提交 2019-06-08 Assembly 4 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 H 13–23(11 aa)
未记录 KMQ [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 mM Bis-Tris, 0.03M HCl, 23% PEG3350, soaked 36h with 1 mM NAD+
分辨率 1.70 Å R-free 0.228
6RXR Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after co-crystallisation 提交 2019-06-08 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 E 13–23(11 aa)
未记录 KMQ [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7.4;293 K;0.1 M Bis-Tris, 0.02 M HCl, 22% PEG 3350, 1 mM NAD
分辨率 1.70 Å R-free 0.228
6RXR Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after co-crystallisation 提交 2019-06-08 Assembly 2 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 F 13–23(11 aa)
未记录 KMQ [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7.4;293 K;0.1 M Bis-Tris, 0.02 M HCl, 22% PEG 3350, 1 mM NAD
分辨率 1.70 Å R-free 0.228
6RXR Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after co-crystallisation 提交 2019-06-08 Assembly 3 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 G 13–23(11 aa)
未记录 KMQ [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7.4;293 K;0.1 M Bis-Tris, 0.02 M HCl, 22% PEG 3350, 1 mM NAD
分辨率 1.70 Å R-free 0.228
6RXR Crystal structure of CobB Ac2 (A76G, I131C, V162G) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after co-crystallisation 提交 2019-06-08 Assembly 4 蛋白异源复合物 异源复合物;蛋白 × 2 PDB 声明:dimeric(2) 与蛋白数一致
链 H 13–23(11 aa)
未记录 KMQ [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, HANGING DROP;pH 7.4;293 K;0.1 M Bis-Tris, 0.02 M HCl, 22% PEG 3350, 1 mM NAD
分辨率 1.70 Å R-free 0.228
7E9C Cryo-EM structure of the 1:1 Orc1 BAH domain in complex with nucleosome 提交 2021-03-04 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 9 PDB 声明:undecameric(11) 与全部聚合物一致
链 B 1–103(103 aa)
链 F 1–103(103 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.5
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.50 Å
7E9F Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome 提交 2021-03-04 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 10 PDB 声明:dodecameric(12) 与全部聚合物一致
链 B 1–103(103 aa)
链 F 1–103(103 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.5
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 4.00 Å
7K78 antibody and nucleosome complex 提交 2020-09-22 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 10 PDB 声明:dodecameric(12) 与全部聚合物一致
链 B 1–103(103 aa)
链 F 1–103(103 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.3
cryo-EM玻璃化条件 冷冻剂 NITROGEN
分辨率 3.10 Å
7K7G nucleosome and Gal4 complex 提交 2020-09-22 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 9 PDB 声明:undecameric(11) 与全部聚合物一致
链 B 1–103(103 aa)
链 F 1–103(103 aa)
未记录 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.3
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 4.20 Å
7XAY Crystal structure of Hat1-Hat2-Asf1-H3-H4 提交 2022-03-19 Assembly 1 信息不足 异源复合物;蛋白 × 5 PDB 声明:pentameric(5) 与蛋白数一致
链 E 8–103(96 aa)
未记录 COA COENZYME A × 1 X-RAY DIFFRACTION
X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP;289 K;100 mM Bis-Tris propane, pH 6.5, 20% PEG-3350, and 200 mM sodium nitrate
分辨率 3.30 Å R-free 0.256
7Z0O Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA 提交 2022-02-23 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 8 PDB 声明:decameric(10) 与全部聚合物一致
链 B 1–103(103 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.2
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 2.80 Å
8GHN Composite model of the yeast Hir Complex with Asf1/H3/H4 提交 2023-03-10 Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 15 PDB 声明:15-meric(15) 与蛋白数一致
链 N 1–103(103 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.6
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 2.96 Å
8OW0 Cryo-EM structure of CBF1-CCAN bound topologically to a centromeric CENP-A nucleosome 提交 2023-04-26 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 23 PDB 声明:25-meric(25) 与全部聚合物一致
链 b 1–103(103 aa)
链 f 1–103(103 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 8
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.40 Å
8OW1 Cryo-EM structure of the yeast Inner kinetochore bound to a CENP-A nucleosome. 提交 2023-04-26 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 40 PDB 声明:42-meric(42) 与全部聚合物一致
链 b 1–103(103 aa)
链 f 1–103(103 aa)
未记录 未记录非水小分子 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 8
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.70 Å
8QKU SWR1-nucleosome complex in configuration 1 提交 2023-09-18 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 18 PDB 声明:eicosameric(20) 与全部聚合物一致
链 C 1–103(103 aa)
链 D 1–103(103 aa)
未记录 ADP ADENOSINE-5'-DIPHOSPHATE × 8 BEF BERYLLIUM TRIFLUORIDE ION × 2 MG MAGNESIUM ION × 8 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.80 Å
8QKV SWR1-nucleosome complex in configuration 2 提交 2023-09-18 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 18 PDB 声明:eicosameric(20) 与全部聚合物一致
链 C 1–103(103 aa)
链 D 1–103(103 aa)
未记录 ADP ADENOSINE-5'-DIPHOSPHATE × 8 BEF BERYLLIUM TRIFLUORIDE ION × 2 MG MAGNESIUM ION × 8 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 4.70 Å
8QYV SWR1-hexasome complex 提交 2023-10-26 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 17 PDB 声明:19-meric(19) 与全部聚合物一致
链 C 1–103(103 aa)
链 D 1–103(103 aa)
未记录 ADP ADENOSINE-5'-DIPHOSPHATE × 8 BEF BERYLLIUM TRIFLUORIDE ION × 2 MG MAGNESIUM ION × 8 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.5
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.50 Å
8QZ0 SWR1-hexasome-dimer complex 提交 2023-10-26 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 20 PDB 声明:22-meric(22) 与全部聚合物一致
链 C 1–103(103 aa)
链 D 1–103(103 aa)
未记录 ADP ADENOSINE-5'-DIPHOSPHATE × 8 BEF BERYLLIUM TRIFLUORIDE ION × 2 MG MAGNESIUM ION × 8 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.5
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.80 Å
8XGC Structure of yeast replisome associated with FACT and histone hexamer, Composite map 提交 2023-12-15 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 27 PDB 声明:29-meric(29) 与全部聚合物一致
链 O 1–103(103 aa)
链 S 1–103(103 aa)
未记录 ZN ZINC ION × 7 ADP ADENOSINE-5'-DIPHOSPHATE × 5 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.5
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 3.70 Å
9FBW SWR1 lacking Swc5 subunit in complex with hexasome 提交 2024-05-14 Assembly 1 蛋白–DNA 异源复合物;蛋白 × 16 PDB 声明:18-meric(18) 与全部聚合物一致
链 C 1–103(103 aa)
链 D 1–103(103 aa)
未记录 ADP ADENOSINE-5'-DIPHOSPHATE × 8 BEF BERYLLIUM TRIFLUORIDE ION × 2 MG MAGNESIUM ION × 8 ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM缓冲液 pH 7.5
cryo-EM玻璃化条件 冷冻剂 ETHANE
分辨率 4.40 Å