6qld

Structure of inner kinetochore CCAN-Cenp-A complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Inner kinetochore subunit MIF2

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P35201

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPC_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain C; PDBConstruct 1–22; UniProt 284–305

Inner kinetochore subunit MCM16

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt Q12262

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPH_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain H; PDBConstruct 1–133; UniProt 4–136

Inner kinetochore subunit CTF3

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt Q12748

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPI_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain I; PDBConstruct 1–408; UniProt 321–728

Inner kinetochore subunit MCM22

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P47167

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPK_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain K; PDBConstruct 1–122; UniProt 7–128

Inner kinetochore subunit IML3

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P38265

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPL_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain L; PDBConstruct 1–241; UniProt 2–242

Inner kinetochore subunit CHL4

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P38907

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPN_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain N; PDBConstruct 1–447; UniProt 5–451

Inner kinetochore subunit MCM21

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt Q06675

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPO_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain O; PDBConstruct 1–212; UniProt 153–364

Inner kinetochore subunit CTF19

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt Q02732

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPP_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain P; PDBConstruct 1–270; UniProt 97–366

Inner kinetochore subunit OKP1

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P53298

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPQ_YEAST
Isoform —
PDB entities 11
Chains and sequence ranges Author chain Q; PDBConstruct 1–231; UniProt 161–391

Inner kinetochore subunit AME1

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P38313

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPU_YEAST
Isoform —
PDB entities 12
Chains and sequence ranges Author chain U; PDBConstruct 1–190; UniProt 131–320

Inner kinetochore subunit NKP1

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt Q12493

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NKP1_YEAST
Isoform —
PDB entities 13
Chains and sequence ranges Author chain Y; PDBConstruct 1–237; UniProt 2–238

Inner kinetochore subunit NKP2

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt Q06162

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NKP2_YEAST
Isoform —
PDB entities 14
Chains and sequence ranges Author chain Z; PDBConstruct 1–151; UniProt 3–153

Histone H3-like centromeric protein CSE4

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P36012

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CENPA_YEAST
Isoform —
PDB entities 15, 18
Chains and sequence ranges Author chain a; PDBConstruct 1–90; UniProt 137–226 Author chain e; PDBConstruct 1–115; UniProt 112–226

Histone H4

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P02309

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H4_YEAST
Isoform —
PDB entities 16
Chains and sequence ranges Author chain b; PDBConstruct 1–79; UniProt 25–103 Author chain f; PDBConstruct 1–79; UniProt 25–103

Histone H2B.2

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P02294

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2B.1 × 1 (P02293) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2B2_YEAST
Isoform —
PDB entities 17
Chains and sequence ranges Author chain d; PDBConstruct 1–93; UniProt 37–129

Histone H2A.1

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P04911

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2B.1 × 1 (P02293) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2A1_YEAST
Isoform —
PDB entities 19, 21
Chains and sequence ranges Author chain g; PDBConstruct 1–105; UniProt 17–121 Author chain i; PDBConstruct 1–102; UniProt 17–118

Histone H2B.1

Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt P02293

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 Inner kinetochore subunit MIF2 × 1 (P35201) DNA (125-MER) × 1 Inner kinetochore subunit MCM16 × 1 (Q12262) Inner kinetochore subunit CTF3 × 1 (Q12748) DNA (125-MER) × 1 Inner kinetochore subunit MCM22 × 1 (P47167) Inner kinetochore subunit IML3 × 1 (P38265) Inner kinetochore subunit CHL4 × 1 (P38907) Inner kinetochore subunit MCM21 × 1 (Q06675) Inner kinetochore subunit CTF19 × 1 (Q02732) Inner kinetochore subunit OKP1 × 1 (P53298) Inner kinetochore subunit AME1 × 1 (P38313) Inner kinetochore subunit NKP1 × 1 (Q12493) Inner kinetochore subunit NKP2 × 1 (Q06162) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H4 × 2 (P02309) Histone H2B.2 × 1 (P02294) Histone H3-like centromeric protein CSE4 × 1 (P36012) Histone H2A.1 × 1 (P04911) Histone H2A.1 × 1 (P04911) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2B1_YEAST
Isoform —
PDB entities 20
Chains and sequence ranges Author chain h; PDBConstruct 1–94; UniProt 36–129

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6qld
Deposition date deposition_date2019-01-31
Structure title titleStructure of inner kinetochore CCAN-Cenp-A complex
Keywords keywordsinner kinetochore, DNA, nucleosome, DNA BINDING PROTEIN; DNA BINDING PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6qld__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6qld__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6qld__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)62.71 Å
Rg (electron density)62.47 Å
Total Rg62.53 Å
Atom count29086
Residues3405
Excluded volume504270 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6qld__assembly_1__model_1 22-meric (22) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (21)

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7. Citations (1)