6f1u

N terminal region of dynein tail domains in complex with dynactin filament and BICDR-1

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ARP1 actin related protein 1 homolog A

OrganismNot specified

UniProt F2Z5G5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Capping protein (Actin filament) muscle Z-line, alpha 1 × 1 (A0PFK5) F-actin capping protein beta subunit × 1 (A9XFX6) Dynactin subunit 2 × 1 (F1SKF9) Dynactin subunit 2 × 1 (F1SL58) Cytoplasmic dynein 1 heavy chain 1 × 3 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 1 (Q13409) BICD family-like cargo adapter 1 × 2 (A0JNT9) ADENOSINE-5'-DIPHOSPHATE × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F2Z5G5_PIG
Isoform —
PDB entities 1
Chains and sequence ranges Author chain B; PDBConstruct 1–376; UniProt 1–376 Author chain D; PDBConstruct 1–376; UniProt 1–376 Author chain F; PDBConstruct 1–376; UniProt 1–376

Capping protein (Actin filament) muscle Z-line, alpha 1

OrganismNot specified

UniProt A0PFK5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 ARP1 actin related protein 1 homolog A × 3 (F2Z5G5) F-actin capping protein beta subunit × 1 (A9XFX6) Dynactin subunit 2 × 1 (F1SKF9) Dynactin subunit 2 × 1 (F1SL58) Cytoplasmic dynein 1 heavy chain 1 × 3 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 1 (Q13409) BICD family-like cargo adapter 1 × 2 (A0JNT9) ADENOSINE-5'-DIPHOSPHATE × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0PFK5_PIG
Isoform —
PDB entities 2
Chains and sequence ranges Author chain K; PDBConstruct 1–286; UniProt 1–286

F-actin capping protein beta subunit

OrganismNot specified

UniProt A9XFX6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 ARP1 actin related protein 1 homolog A × 3 (F2Z5G5) Capping protein (Actin filament) muscle Z-line, alpha 1 × 1 (A0PFK5) Dynactin subunit 2 × 1 (F1SKF9) Dynactin subunit 2 × 1 (F1SL58) Cytoplasmic dynein 1 heavy chain 1 × 3 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 1 (Q13409) BICD family-like cargo adapter 1 × 2 (A0JNT9) ADENOSINE-5'-DIPHOSPHATE × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A9XFX6_PIG
Isoform —
PDB entities 3
Chains and sequence ranges Author chain L; PDBConstruct 1–271; UniProt 1–271

Dynactin subunit 2

OrganismNot specified

UniProt F1SKF9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 ARP1 actin related protein 1 homolog A × 3 (F2Z5G5) Capping protein (Actin filament) muscle Z-line, alpha 1 × 1 (A0PFK5) F-actin capping protein beta subunit × 1 (A9XFX6) Dynactin subunit 2 × 1 (F1SL58) Cytoplasmic dynein 1 heavy chain 1 × 3 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 1 (Q13409) BICD family-like cargo adapter 1 × 2 (A0JNT9) ADENOSINE-5'-DIPHOSPHATE × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F1SKF9_PIG
Isoform —
PDB entities 4
Chains and sequence ranges Author chain c; PDBConstruct 1–50; UniProt 1–50

Dynactin subunit 2

OrganismNot specified

UniProt F1SL58

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 ARP1 actin related protein 1 homolog A × 3 (F2Z5G5) Capping protein (Actin filament) muscle Z-line, alpha 1 × 1 (A0PFK5) F-actin capping protein beta subunit × 1 (A9XFX6) Dynactin subunit 2 × 1 (F1SKF9) Cytoplasmic dynein 1 heavy chain 1 × 3 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 1 (Q13409) BICD family-like cargo adapter 1 × 2 (A0JNT9) ADENOSINE-5'-DIPHOSPHATE × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F1SL58_PIG
Isoform —
PDB entities 5
Chains and sequence ranges Author chain d; PDBConstruct 1–26; UniProt 1–26

Cytoplasmic dynein 1 heavy chain 1

Homo sapiens

UniProt Q14204

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 ARP1 actin related protein 1 homolog A × 3 (F2Z5G5) Capping protein (Actin filament) muscle Z-line, alpha 1 × 1 (A0PFK5) F-actin capping protein beta subunit × 1 (A9XFX6) Dynactin subunit 2 × 1 (F1SKF9) Dynactin subunit 2 × 1 (F1SL58) Cytoplasmic dynein 1 intermediate chain 2 × 1 (Q13409) BICD family-like cargo adapter 1 × 2 (A0JNT9) ADENOSINE-5'-DIPHOSPHATE × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DYHC1_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain f; PDBConstruct 1–1186; UniProt 1–1186 Author chain m; PDBConstruct 1–1186; UniProt 1–1186 Author chain n; PDBConstruct 1–1186; UniProt 1–1186

Cytoplasmic dynein 1 intermediate chain 2

Homo sapiens

UniProt Q13409

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 ARP1 actin related protein 1 homolog A × 3 (F2Z5G5) Capping protein (Actin filament) muscle Z-line, alpha 1 × 1 (A0PFK5) F-actin capping protein beta subunit × 1 (A9XFX6) Dynactin subunit 2 × 1 (F1SKF9) Dynactin subunit 2 × 1 (F1SL58) Cytoplasmic dynein 1 heavy chain 1 × 3 (Q14204) BICD family-like cargo adapter 1 × 2 (A0JNT9) ADENOSINE-5'-DIPHOSPHATE × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DC1I2_HUMAN
Isoform Q13409-3
PDB entities 7
Chains and sequence ranges Author chain h; PDBConstruct 1–612; UniProt 1–612

BICD family-like cargo adapter 1

Mus musculus

UniProt A0JNT9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 ARP1 actin related protein 1 homolog A × 3 (F2Z5G5) Capping protein (Actin filament) muscle Z-line, alpha 1 × 1 (A0PFK5) F-actin capping protein beta subunit × 1 (A9XFX6) Dynactin subunit 2 × 1 (F1SKF9) Dynactin subunit 2 × 1 (F1SL58) Cytoplasmic dynein 1 heavy chain 1 × 3 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 1 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BICL1_MOUSE
Isoform —
PDB entities 8
Chains and sequence ranges Author chain X; PDBConstruct 1–577; UniProt 1–577 Author chain x; PDBConstruct 1–577; UniProt 1–577

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6f1u
Deposition date deposition_date2017-11-23
Structure title titleN terminal region of dynein tail domains in complex with dynactin filament and BICDR-1
Keywords keywordsCryo-EM, Complex, MOTOR PROTEIN, Cargo adaptor; MOTOR PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6f1u__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6f1u__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6f1u__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)66.89 Å
Rg (electron density)66.97 Å
Total Rg66.86 Å
Atom count28866
Residues3555
Excluded volume512350 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6f1u__assembly_1__model_1 tridecameric (13) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (9)

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6. Fold Classification (SCOP + CATH) 13 domains

CATH v4.4 (13 domains)

Domain ID domain_id6f1uB01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id6f1uB02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id6f1uB03
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology640 — Actin; Chain A, domain 4
Homologous superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
Domain ID domain_id6f1uD01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id6f1uD02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id6f1uD03
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology640 — Actin; Chain A, domain 4
Homologous superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
Domain ID domain_id6f1uF01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id6f1uF02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily40 — ATPase, nucleotide binding domain
Domain ID domain_id6f1uF03
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology640 — Actin; Chain A, domain 4
Homologous superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
Domain ID domain_id6f1uK01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1140 — Ribosomal protein S3 C-terminal domain
Homologous superfamily homologous superfamily60 — F-actin capping protein, alpha subunit
Domain ID domain_id6f1uK02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1150 — Aspartate Aminotransferase, domain 1
Homologous superfamily homologous superfamily210 — F-actin capping protein, beta subunit
Domain ID domain_id6f1uL01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily570 — F-actin capping protein, alpha/beta subunit, N-terminal domain
Domain ID domain_id6f1uL02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1150 — Aspartate Aminotransferase, domain 1
Homologous superfamily homologous superfamily210 — F-actin capping protein, beta subunit
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7. Citations (1)