9v7c
The cryo-EM structure of FD4_orientation2 bound Lewy fold fibril.
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9v7c |
| deposition_date | 2025-05-27 |
| title | The cryo-EM structure of FD4_orientation2 bound Lewy fold fibril. |
| keywords | amyloid, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 30.13 Å |
| rg_electron | 29.37 Å |
| i0 | 369919000.00 |
| molecular_weight | 102450.0 kDa |
| excluded_volume | 98814 ų |
| envelope_volume | 171490 ų |
| shell_volume | 46490 ų |
| envelope_diameter | 98.1 Å |
| shell_rg | 38.52 Å |
| envelope_rg | 29.50 Å |
| shape_rg | 29.34 Å |
| total_rg | 30.00 Å |
| total_atoms | 7773 |
| n_residues | 1035 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 93.4 Å |
| rg_real | 29.98 Å |
| rg_real_error | 0.48 Å |
| i0_real | 3.6990e+08 |
| i0_real_error | 5.4640e+06 |
| rg_reciprocal | 30.05 Å |
| i0_reciprocal | 369900000.0000 |
| total_estimate | 0.9035 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 37.0 Å |
| skewness | 0.188 |
| kurtosis | -0.491 |
| angular_range | — – 0.2650 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 89200000.0000 |
| n_real_points | 54 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.932; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.955 |