|
10XU
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Deposited 2026-02-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
35–101(67 aa)
Chain B
35–101(67 aa)
Chain C
35–101(67 aa)
Chain D
35–101(67 aa)
Chain E
35–101(67 aa)
Chain U
35–101(67 aa)
Chain W
35–101(67 aa)
Chain X
35–101(67 aa)
Chain Y
35–101(67 aa)
Chain Z
35–101(67 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.18 Å
|
|
1XQ8
Human micelle-bound alpha-synuclein
Deposited 2004-10-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 7.4;298.2 K;Ionic strength (raw mmCIF value) 115;Pressure 1
NMR sample composition
0.5 MM ALPHA-SYNUCLEIN 2H, 13C, 15N
|
Resolution not provided
|
|
2JN5
Solution Structure of a Dodecapeptide from Alpha-Synuclein Bound with Synphilin-1
Deposited 2006-12-28
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–12(12 aa)
Fragment:residues 1-12
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 6.5;298 K;Pressure ambient
NMR sample composition
1 mM entity, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 mM Synphilin-1, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
2KKW
SLAS-micelle bound alpha-synuclein
Deposited 2009-06-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
Experimental method not declared
NMR measurement conditions
pH 7.4;298.2 K;Ionic strength (raw mmCIF value) 0.05;Pressure AMBIENT
NMR sample composition
0.75 MM [U-100% 13C, U-100% 15N, U-80% 2H] ALPHA-SYNUCLEIN, 75 MM SODIUM LAUROYL SARCOSINATE, 95% H2O/5% D2O
|
Resolution not provided
|
|
2M55
NMR structure of the complex of an N-terminally acetylated alpha-synuclein peptide with calmodulin
Deposited 2013-02-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–19(19 aa)
Fragment:UNP residues 1-19
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
SOLUTION NMR
NMR measurement conditions
pH 6.36;310 K;Pressure ambient
NMR sample composition
600 uM [U-99% 13C; U-99% 15N] calmodulin, 600 uM alpha-synuclein, 50 mM MES, 100 mM potassium chloride, 3 mM calcium ion, 95% H2O/5% D2O | 95% H2O/5% D2O
NMR sample composition
700 uM [U-13C; U-15N]-Met,Val,Phe,Gly,Leu,Ala alpha-synuclein, 700 uM calmodulin, 50 mM MES, 100 mM potassium chloride, 3 mM calcium ion, 0.1% sodium azide, 95% H2O/5% D2O | 95% H2O/5% D2O
NMR sample composition
150 uM [U-99% 13C; U-99% 15N] calmodulin, 150 uM alpha-synuclein, 50 mM MES, 100 mM potassium chloride, 3 mM calcium ion, 10 mg/mL Pf1 phage, 95% H2O/5% D2O | 95% H2O/5% D2O
|
Resolution not provided
|
|
2N0A
Atomic-resolution structure of alpha-synuclein fibrils
Deposited 2015-03-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLID-STATE NMR
NMR measurement conditions
pH 7;Pressure ambient
NMR sample composition
66% [U-100% 13C; U-100% 15N] alpha-synuclein, 34% H2O, Rehydrated Fibril | Rehydrated Fibril
NMR sample composition
66% [U-100% 13C 1,3-Glycerol; U-100% 15N] alpha-synuclein, 34% H2O, Rehydrated Fibril | Rehydrated Fibril
NMR sample composition
66% [U-100% 13C 2-Glycerol; U-100% 15N] alpha-synuclein, 34% H2O, Rehydrated Fibril | Rehydrated Fibril
NMR sample composition
66% [U-25% 13C; U-25% 15N] alpha-synuclein, 34% H2O, Rehydrated Fibril | Rehydrated Fibril
NMR sample composition
66% [U-25% 13C 1,3-Glycerol; natural abundance N][natural abundance C13, U-50% N15] alpha-synuclein, 34% H2O, Rehydrated Fibril | Rehydrated Fibril
NMR sample composition
66% [U-25% 13C 2-Glycerol; natural abundance N][natural abundance C13, U-50% N15] alpha-synuclein, 34% H2O, Rehydrated Fibril | Rehydrated Fibril
NMR sample composition
90% Adamantane, 10% KBr, Dry | Dry
|
Resolution not provided
|
|
2X6M
Structure of a single domain camelid antibody fragment in complex with a C-terminal peptide of alpha-synuclein
Deposited 2010-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
132–140(9 aa)
Fragment:C-TERMINAL FRAGMENT OF ALPHA-SYNUCLEIN, RESIDUES 132-140
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;25% PEG6000, 100 MM HEPES PH 7.5, 100 MM LICL
|
Resolution 1.62 Å
R-free 0.203
|
|
3Q25
Crystal structure of human alpha-synuclein (1-19) fused to maltose binding protein (MBP)
Deposited 2010-12-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–19(19 aa)
|
Not recorded
|
SO4 SULFATE ION × 10
GOL GLYCEROL × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;290 K;2.2 M AMMONIUM SULFATE, 20% (w/v) GLYCEROL, pH 8.0, vapor diffusion, hanging drop, temperature 290K
|
Resolution 1.90 Å
R-free 0.196
|
|
3Q25
Crystal structure of human alpha-synuclein (1-19) fused to maltose binding protein (MBP)
Deposited 2010-12-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–19(19 aa)
|
Not recorded
|
SO4 SULFATE ION × 20
GOL GLYCEROL × 12
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;290 K;2.2 M AMMONIUM SULFATE, 20% (w/v) GLYCEROL, pH 8.0, vapor diffusion, hanging drop, temperature 290K
|
Resolution 1.90 Å
R-free 0.196
|
|
3Q26
Cyrstal structure of human alpha-synuclein (10-42) fused to maltose binding protein (MBP)
Deposited 2010-12-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
10–42(33 aa)
|
Not recorded
|
GOL GLYCEROL × 6
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;290 K;0.2M tri-lithium citrate, 2.2 M ammonium sulfate, pH 8.0, vapor diffusion, hanging drop, temperature 290K
|
Resolution 1.54 Å
R-free 0.183
|
|
3Q27
Cyrstal structure of human alpha-synuclein (32-57) fused to maltose binding protein (MBP)
Deposited 2010-12-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
32–57(26 aa)
|
Not recorded
|
SO4 SULFATE ION × 3
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9;290 K;0.1M bicine pH 9.0, 2.4 M ammonium sulfate, vapor diffusion, hanging drop, temperature 290K
|
Resolution 1.30 Å
R-free 0.156
|
|
3Q28
Cyrstal structure of human alpha-synuclein (58-79) fused to maltose binding protein (MBP)
Deposited 2010-12-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
58–79(22 aa)
|
Not recorded
|
SO4 SULFATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9;290 K;0.1M BICINE pH 9.0, 3.2 M AMMONIUM SULFATE, vapor diffusion, hanging drop, temperature 290K
|
Resolution 1.60 Å
R-free 0.173
|
|
3Q29
Cyrstal structure of human alpha-synuclein (1-19) fused to maltose binding protein (MBP)
Deposited 2010-12-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–19(19 aa)
Chain C
1–19(19 aa)
|
Not recorded
|
GOL GLYCEROL × 4
SO4 SULFATE ION × 11
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;290 K;0.1M TRIS pH 8.0, 2.4 M AMMONIUM SULFATE, vapor diffusion, hanging drop, temperature 290K
|
Resolution 2.30 Å
R-free 0.232
|
|
3Q29
Cyrstal structure of human alpha-synuclein (1-19) fused to maltose binding protein (MBP)
Deposited 2010-12-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–19(19 aa)
Chain C
1–19(19 aa)
|
Not recorded
|
GOL GLYCEROL × 4
SO4 SULFATE ION × 11
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;290 K;0.1M TRIS pH 8.0, 2.4 M AMMONIUM SULFATE, vapor diffusion, hanging drop, temperature 290K
|
Resolution 2.30 Å
R-free 0.232
|
|
4BXL
Structure of alpha-synuclein in complex with an engineered binding protein
Deposited 2013-07-12
|
Different construct
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
35–56(22 aa)
Fragment:RESIDUES 35-56
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 7.4;303 K;Ionic strength (raw mmCIF value) 0.07;Pressure 1.0
NMR measurement conditions
pH 7.4;303 K;Ionic strength (raw mmCIF value) 0.07;Pressure 1.0
NMR sample composition
93% H2O/7% D2O
NMR sample composition
93% H2O/7% D2O
|
Resolution not provided
|
|
4R0U
Tgvtava, an amyloid forming segment from alpha synuclein, residues 72-78
Deposited 2014-08-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
72–78(7 aa)
Fragment:UNP RESIDUES 72-78
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.2M magnesium formate, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.38 Å
R-free 0.217
|
|
4R0W
Vvtgvta, an amyloid forming segment from alpha synuclein, residues 70-76
Deposited 2014-08-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
70–76(7 aa)
Fragment:UNP RESIDUES 70-76
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;isopropanol, sodium cacodylate, pH 6.5, vapor diffusion, hanging drop, temperature 298K
|
Resolution 1.50 Å
R-free 0.274
|
|
4RIK
Amyloid forming segment, AVVTGVTAV, from the NAC domain of Parkinson's disease protein alpha-synuclein, residues 69-77
Deposited 2014-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
69–77(9 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;273 K;0.9M Ammonium Phosphate, 0.1M Sodium Acetate, pH 4.6, vapor diffusion, hanging drop, temperature 273K
|
Resolution 1.85 Å
R-free 0.221
|
|
4RIL
Structure of the amyloid forming segment, GAVVTGVTAVA, from the NAC domain of Parkinson's disease protein alpha-synuclein, residues 68-78, determined by electron diffraction
Deposited 2014-10-06
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
68–78(11 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
batch crystallization;pH 4;310 K;1 mg of synthetic peptide GAVVTGVTAVA was dissolved in 1 ml of sterile water and shaken overnight in an orbital mixing plate, pH 4.0, batch crystallization, temperature 310K
|
Resolution 1.43 Å
R-free 0.275
|
|
4ZNN
MicroED structure of the segment, GVVHGVTTVA, from the A53T familial mutant of Parkinson's disease protein, alpha-synuclein residues 47-56
Deposited 2015-05-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
47–56(10 aa)
|
Mutation:A53T
|
No recorded non-water small molecule
|
ELECTRON CRYSTALLOGRAPHY
X-ray crystallization conditions
BATCH MODE;pH 7;310 K;1 mg of synthetic peptide GVVHGVTTVA was dissolved in 200 microliters of 50 mM phosphate buffer pH 7.0 and 0.1% w/v DMSO and shaken overnight in an orbital mixing plate
|
Resolution 1.41 Å
R-free 0.282
|
|
6A6B
cryo-em structure of alpha-synuclein fiber
Deposited 2018-06-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
37–99(63 aa)
Fragment:UNP residues 37-99
Chain B
37–99(63 aa)
Fragment:UNP residues 37-99
Chain C
37–99(63 aa)
Fragment:UNP residues 37-99
Chain D
37–99(63 aa)
Fragment:UNP residues 37-99
Chain E
37–99(63 aa)
Fragment:UNP residues 37-99
Chain F
37–99(63 aa)
Fragment:UNP residues 37-99
Chain G
37–99(63 aa)
Fragment:UNP residues 37-99
Chain H
37–99(63 aa)
Fragment:UNP residues 37-99
Chain I
37–99(63 aa)
Fragment:UNP residues 37-99
Chain J
37–99(63 aa)
Fragment:UNP residues 37-99
Chain K
37–99(63 aa)
Fragment:UNP residues 37-99
Chain L
37–99(63 aa)
Fragment:UNP residues 37-99
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.07 Å
|
|
6CU7
Alpha Synuclein fibril formed by full length protein - Rod Polymorph
Deposited 2018-03-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 3
cryo-EM vitrification conditions
Cryogen ETHANE;blot force: 1
blot time: 4s
|
Resolution 3.50 Å
|
|
6CU8
Alpha Synuclein fibril formed by full length protein - Twister Polymorph
Deposited 2018-03-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 3
cryo-EM vitrification conditions
Cryogen ETHANE;blot force: 1
blot time: 4s
|
Resolution 3.60 Å
|
|
6H6B
Structure of alpha-synuclein fibrils
Deposited 2018-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–121(121 aa)
Chain B
1–121(121 aa)
Chain C
1–121(121 aa)
Chain D
1–121(121 aa)
Chain E
1–121(121 aa)
Chain F
1–121(121 aa)
Chain G
1–121(121 aa)
Chain H
1–121(121 aa)
Chain I
1–121(121 aa)
Chain J
1–121(121 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.3
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
6I42
Structure of the alpha-Synuclein PreNAC/Cyclophilin A-complex
Deposited 2018-11-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
48–60(13 aa)
Fragment:UNP residues 48-60
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7;293 K;1.93 M tri-ammonium citrate, pH 7.0
|
Resolution 1.38 Å
R-free 0.178
|
|
6L1T
Cryo-EM structure of phosphorylated Tyr39 a-synuclein amyloid fibril
Deposited 2019-09-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.22 Å
|
|
6L1U
Cryo-EM structure of phosphorylated Tyr39 alpha-synuclein amyloid fibril
Deposited 2019-09-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 15
PDB declaration: pentadecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.37 Å
|
|
6L4S
cryo-em structure of alpha-synuclein fiber mutation type E46K
Deposited 2019-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
45–99(55 aa)
Chain B
45–99(55 aa)
Chain C
45–99(55 aa)
Chain D
45–99(55 aa)
Chain E
45–99(55 aa)
Chain F
45–99(55 aa)
|
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.37 Å
|
|
6LRQ
Cryo-EM structure of A53T alpha-synuclein amyloid fibril
Deposited 2020-01-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.49 Å
|
|
6OSJ
Cryo-EM structure of the N-terminally acetylated full length alpha-synuclein fibrils (Ac1-140)
Deposited 2019-05-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
6OSL
Cryo-EM structure of the N-terminally acetylated C-terminal Alpha-synuclein truncation Ac1-122
Deposited 2019-05-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
6OSM
Cryo-EM structure of the N-terminally acetylated C-terminal Alpha-synuclein truncation Ac1-103
Deposited 2019-05-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
6PEO
Cryo-EM structure of alpha-synuclein H50Q Narrow Fibril
Deposited 2019-06-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
6PES
Cryo-EM structure of alpha-synuclein H50Q Wide Fibril
Deposited 2019-06-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain V
1–140(140 aa)
Chain W
1–140(140 aa)
Chain X
1–140(140 aa)
Chain Y
1–140(140 aa)
Chain Z
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
6RT0
cryo-em structure of alpha-synuclein fibril polymorph 2A
Deposited 2019-05-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE;3 uL aliquots were applied onto second glow-discharged 300 mesh copper Quantifoil grids R2 1
|
Resolution 3.10 Å
|
|
6RTB
cryo-em structure of alpha-synuclein fibril polymorph 2B
Deposited 2019-05-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE;3 uL aliquots were applied onto second glow-discharged 300 mesh copper Quantifoil grids R2 1
|
Resolution 3.46 Å
|
|
6SST
cryo-em structure of alpha-synuclein fibril polymorph 2B
Deposited 2019-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE;3 uL aliquots were applied onto second glow-discharged 300 mesh copper Quantifoil grids R2 1
|
Resolution 3.40 Å
|
|
6SSX
cryo-em structure of alpha-synuclein fibril polymorph 2A
Deposited 2019-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE;3 uL aliquots were applied onto second glow-discharged 300 mesh copper Quantifoil grids R2 1
|
Resolution 2.98 Å
|
|
6UFR
Structure of recombinantly assembled E46K alpha-synuclein fibrils
Deposited 2019-09-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
|
|
6XYO
Multiple system atrophy Type I alpha-synuclein filament
Deposited 2020-01-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
6XYP
Multiple system atrophy Type II-1 alpha-synuclein filament
Deposited 2020-01-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.29 Å
|
|
6XYQ
Multiple system atrophy Type II-2 alpha-synuclein filament
Deposited 2020-01-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.09 Å
|
|
7C1D
Cryo-EM structure of the hE46K cross-seeded hWT alpha-synuclein fibril
Deposited 2020-05-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
7E0F
CryoEM structure of G51D alpha-synuclein amyloid fibril
Deposited 2021-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Mutation:G51D
Mutation:G51D
Mutation:G51D
Mutation:G51D
Mutation:G51D
Mutation:G51D
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.02 Å
|
|
7L7H
Alpha-synuclein fibrils
Deposited 2020-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 4.00 Å
|
|
7LC9
Cryo-EM structure of the N-terminal alpha-synuclein truncation 41-140
Deposited 2021-01-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
41–140(100 aa)
Chain B
41–140(100 aa)
Chain C
41–140(100 aa)
Chain D
41–140(100 aa)
Chain E
41–140(100 aa)
Chain F
41–140(100 aa)
Chain G
41–140(100 aa)
Chain H
41–140(100 aa)
Chain I
41–140(100 aa)
Chain J
41–140(100 aa)
Chain K
41–140(100 aa)
Chain L
41–140(100 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
7NCA
Type 1A alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 2
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.47 Å
|
|
7NCA
Type 1A alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 2
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.47 Å
|
|
7NCG
Type 2A alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 2
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.43 Å
|
|
7NCG
Type 2A alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 2
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.43 Å
|
|
7NCH
Type 1B alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.84 Å
|
|
7NCH
Type 1B alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.84 Å
|
|
7NCI
Type 2B alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.55 Å
|
|
7NCI
Type 2B alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.55 Å
|
|
7NCJ
Type 2AB alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 4.23 Å
|
|
7NCJ
Type 2AB alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 4.23 Å
|
|
7NCK
Type 3 alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 5
Deposited 2021-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;LMB vitrobot IV
|
Resolution 3.18 Å
|
|
7OZG
PMCA-amplified alpha-synuclein fibril polymorph, Parkinson's Disease patient-derived seeds
Deposited 2021-06-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
7OZH
PMCA-amplified alpha-synuclein fibril polymorph, Multiple System Atrophy patient-derived seeds
Deposited 2021-06-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.02 Å
|
|
7STX
Cryo-EM structure of human NatB in complex with CoA-Alpha-Synuclein
Deposited 2021-11-15
|
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
1–5(5 aa)
Fragment:UNP residues 1-5
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
COA COENZYME A × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.14 Å
|
|
7UAK
Structure of recombinantly assembled A53E alpha-synuclein fibrils
Deposited 2022-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Mutation:A53E
Mutation:A53E
Mutation:A53E
Mutation:A53E
Mutation:A53E
Mutation:A53E
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.38 Å
|
|
7V47
Type 1A alpha-synuclein fibril seeded by cerebrospinal fluid from a preclinical Parkinson's disease patient
Deposited 2021-08-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
7V48
Type 1D alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient
Deposited 2021-08-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
7V49
Type 4 alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient
Deposited 2021-08-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
7V4A
Heparin-induced alpha-synuclein fibrils polymorph 1
Deposited 2021-08-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
7V4B
Heparin-induced alpha-synuclein fibrils polymorph 3
Deposited 2021-08-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
7V4C
Heparin-induced alpha-synuclein fibrils polymorph 4
Deposited 2021-08-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
7V4D
Heparin-remodelled alpha-synuclein fibrils
Deposited 2021-08-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
7WMM
alpha-synuclein fibril-F0502B complex
Deposited 2022-01-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
1KI 2-bromanyl-4-[(~{E})-2-[6-[2-(2-fluoranylethoxy)ethyl-methyl-amino]-5-methyl-1,3-benzothiazol-2-yl]ethenyl]phenol × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
7WNZ
CryoEM structure of human alpha-synuclein A53T fibril
Deposited 2022-01-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
36–100(65 aa)
Chain B
36–100(65 aa)
Chain C
36–100(65 aa)
Chain D
36–100(65 aa)
Chain E
36–100(65 aa)
Chain F
36–100(65 aa)
Chain G
36–100(65 aa)
Chain H
36–100(65 aa)
Chain I
36–100(65 aa)
Chain J
36–100(65 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
7WO0
CryoEM structure of human alpha-synuclein A53T fibril induced by calcium ions
Deposited 2022-01-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
35–99(65 aa)
Chain B
35–99(65 aa)
Chain C
35–99(65 aa)
Chain D
35–99(65 aa)
Chain E
35–99(65 aa)
Chain F
35–99(65 aa)
Chain G
35–99(65 aa)
Chain O
35–99(65 aa)
Chain P
35–99(65 aa)
Chain Q
35–99(65 aa)
Chain R
35–99(65 aa)
Chain S
35–99(65 aa)
Chain T
35–99(65 aa)
Chain U
35–99(65 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
7XJX
The cryo-EM structure of Fe3+ induced alpha-syn fibril.
Deposited 2022-04-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
7XO0
Minor polymorph inalpha-synuclein fibril seeded by cerebrospinal fluid from a mid-to-late stage (mid-PD-1) Parkinson's disease patient
Deposited 2022-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
7XO1
Major polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a mid-to-late stage (mid-PD-1) Parkinson's disease patient
Deposited 2022-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
7XO2
Minor polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a mid-to-late stage (mid-PD-4) Parkinson's disease patient
Deposited 2022-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain I
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
7XO3
Type 1C alpha-synuclein fibril seeded by cerebrospinal fluid from a mid-to-late stage (mid-PD-4) Parkinson's disease patient
Deposited 2022-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
7YK2
Cryo-EM structure of Apo-alpha-syn fibril
Deposited 2022-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
7YK8
Cryo-EM structure of dLAG3-alpha-syn fibril
Deposited 2022-07-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
7YNF
CCA-bound alpha-synuclein fibrils
Deposited 2022-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
V79 copper;trisodium;18-(2-carboxylatoethyl)-20-(carboxylatomethyl)-12-ethenyl-7-ethyl-3,8,13,17-tetramethyl-17,18-dihydroporphyrin-21,23-diide-2-carboxylate × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
|
|
7YNG
CR-bound alpha-synuclein fibrils
Deposited 2022-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
7YNL
EB-bound alpha-synuclein fibrils
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Not recorded
|
IZ8 4-azanyl-6-[[4-[4-[(~{E})-(8-azanyl-1-oxidanyl-5,7-disulfo-naphthalen-2-yl)diazenyl]-3-methyl-phenyl]-2-methyl-phenyl]diazenyl]-5-oxidanyl-naphthalene-1,3-disulfonic acid × 16
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
7YNM
ThT-bound alpha-synuclein fibrils conformation 1
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
TFX 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
7YNN
ThT-bound alpha-synuclein fibrils conformation 2
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
TFX 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
7YNO
PiB-bound alpha-synuclein fibrils conformation 1
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
IZV 2-[4-(methylamino)phenyl]-1,3-benzothiazol-6-ol × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
7YNP
BF227-bound alpha-synuclein fibrils
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
IZM 5-[(~{E})-2-(6-methoxy-1,3-benzoxazol-2-yl)ethenyl]-~{N},~{N}-dimethyl-1,3-thiazol-2-amine × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
7YNQ
PiB-bound alpha-synuclein fibrils conformation 2
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
IZV 2-[4-(methylamino)phenyl]-1,3-benzothiazol-6-ol × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
7YNR
C05-03-bound alpha-synuclein fibrils
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
7YNS
SIL5-bound alpha-synuclein fibrils
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
7YNT
pFTAA-bound alpha-synuclein fibrils
Deposited 2022-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8A4L
Lipidic alpha-synuclein fibril - polymorph L2A
Deposited 2022-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 15
PDB declaration: pentadecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.68 Å
|
|
8A9L
Cryo-EM structure of alpha-synuclein filaments from Parkinson's disease and dementia with Lewy bodies
Deposited 2022-06-28
|
Different construct
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 9
PDB declaration: Trimeric
|
Chain A
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.20 Å
|
|
8ADS
Lipidic alpha-synuclein fibril - polymorph L2B
Deposited 2022-07-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.05 Å
|
|
8ADU
Lipidic alpha-synuclein fibril - polymorph L1A
Deposited 2022-07-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.24 Å
|
|
8ADV
Lipidic alpha-synuclein fibril - polymorph L1B
Deposited 2022-07-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.98 Å
|
|
8ADW
Lipidic alpha-synuclein fibril - polymorph L1C
Deposited 2022-07-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.95 Å
|
|
8AEX
Lipidic alpha-synuclein fibril - polymorph L3A
Deposited 2022-07-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.76 Å
|
|
8BQV
Cryo-EM structure of alpha-synuclein singlet filament from Juvenile-onset synucleinopathy
Deposited 2023-01-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 10
PDB declaration: Decameric
|
Chain A
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.00 Å
|
|
8BQW
Cryo-EM structure of alpha-synuclein filaments doublet from Juvenile-onset synucleinopathy
Deposited 2023-01-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 20
PDB declaration: Eicosameric
|
Chain A
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å
|
|
8CE7
Type1 alpha-synuclein filament assembled in vitro by wild-type and mutant (7 residues insertion) protein
Deposited 2023-02-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: Hexameric
|
Chain A
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
8CEB
Type2 alpha-synuclein filament assembled in vitro by wild-type and mutant (7 residues insertion) protein
Deposited 2023-02-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
8CYR
Alpha-synuclein fibril from spontaneous control
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.20 Å
|
|
8CYS
CryoEM structures of amplified alpha-synuclein fibril class B type II with extended core from DLB case I
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8CYT
CryoEM structures of amplified alpha-synuclein fibril class A type I with extended core from DLB case I
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8CYV
CryoEM structures of amplified alpha-synuclein fibril class B mixed type I/II with extended core from DLB case II
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
8CYW
CryoEM structures of amplified alpha-synuclein fibril class B type I with compact core from DLB case III
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8CYX
CryoEM structure of amplified alpha-synuclein fibril class A type I with compact core from DLB case III
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8CYY
CryoEM structure of amplified alpha-synuclein fibril class B mixed type I/II with extended core from DLB case V
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8CZ0
CryoEM structure of amplified alpha-synuclein fibril class B type I with extended core from DLB case VII
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
8CZ1
CryoEM structure of amplified alpha-synuclein fibril class B type II with extended core from DLB case VII
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8CZ2
CryoEM structure of amplified alpha-synuclein fibril class A type I with extended core from DLB case VII
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8CZ3
CryoEM structure of amplified alpha-synuclein fibril class B type I with extended core from DLB case X
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8CZ6
CryoEM structure of amplified alpha-synuclein fibril class A type I with extended core from DLB case X
Deposited 2022-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;Gibco Cat # 10010072
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8FPT
STRUCTURE OF ALPHA-SYNUCLEIN FIBRILS DERIVED FROM HUMAN LEWY BODY DEMENTIA TISSUE
Deposited 2023-01-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLID-STATE NMR
NMR measurement conditions
pH 7.6;273 K;Ionic strength (raw mmCIF value) 100 mM NACL;Pressure AMBIENT
NMR sample composition
66 % [U-100% 13C; U-100% 15N] ALPHA-SYNUCLEIN, 34% H2O | 34% H2O
NMR sample composition
66 % [U-100% 2H; U-100% 13C; U-100% 15N] ALPHA-SYNUCLEIN, 34% H2O, BACK-EXCHANGED IN 99.8% D2O | 34% H2O, BACK-EXCHANGED IN 99.8% D2O
NMR sample composition
20 % [U-25% 2-13C GLYCEROL; U-100% 15N] labelled ALPHA-SYNUCLEIN, 80 % ALPHA-SYNUCLEIN, H2O | H2O
|
Resolution not provided
|
|
8GF7
Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils
Deposited 2023-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
7–96(90 aa)
Chain B
7–96(90 aa)
Chain C
7–96(90 aa)
Chain D
7–96(90 aa)
Chain E
7–96(90 aa)
Chain F
7–96(90 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;normal PBS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.80 Å
|
|
8H03
Major polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a preclinical Parkinson's disease patient
Deposited 2022-09-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
8H04
Major polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient
Deposited 2022-09-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8H05
Minor polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient
Deposited 2022-09-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8HZB
Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-1)
Deposited 2023-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8HZC
Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-2)
Deposited 2023-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8HZS
Formed alpha-synuclein fibrils after incubation with heparin for 3 days (Hep-remod-3)
Deposited 2023-01-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
8JEX
Cryo-EM structure of alpha-synuclein gS87 fibril
Deposited 2023-05-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain K
1–140(140 aa)
Chain P
1–140(140 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8JEY
Cryo-EM structure of alpha-synuclein pS87 fibril
Deposited 2023-05-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
8JJV
Structure of truncated form of nanobody in complex with alpha-synuclein peptide
Deposited 2023-05-31
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
43–56(14 aa)
|
Not recorded
|
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1M BIS-TRIS pH 5.5, 2.0M ammonium sulfate
|
Resolution 1.23 Å
R-free 0.170
|
|
8JLY
Structure of nanobody in complex with alpha-synuclein peptide
Deposited 2023-06-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
43–56(14 aa)
|
Not recorded
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1M sodium acetate trihydrate pH 4.6, 2.0M ammonium sulfate
|
Resolution 1.29 Å
R-free 0.186
|
|
8OG0
Crystal structure of MJF14-6-4-2 Fab fragment in complex with epitope peptide
Deposited 2023-03-17
|
Different construct
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain P
136–140(5 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;293 K;Sitting droplets were set up by mixing 1 ul of Fab fragments, 0.5 ul of peptide (1 mg/ml in 20 mM tris-HCl) and 1 ul crystallization buffer (24% PEG 6000, 0.1M Na-citrate pH 5.0).
|
Resolution 1.71 Å
R-free 0.231
|
|
8OQI
Cryo-EM structure of the wild-type alpha-synuclein fibril.
Deposited 2023-04-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8PIX
Cryo EM structure of the type 3C polymorph of alpha-synuclein at low pH.
Deposited 2023-06-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 5.8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.41 Å
|
|
8PJO
Cryo EM structure of the type 3D polymorph of alpha-synuclein E46K mutant at low pH.
Deposited 2023-06-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
|
CL CHLORIDE ION × 10
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 5.8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 2.31 Å
|
|
8PK2
Cryo EM structure of the type 1m polymorph of alpha-synuclein
Deposited 2023-06-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.26 Å
|
|
8PK4
Cryo EM structure of the type 5A polymorph of alpha-synuclein.
Deposited 2023-06-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.30 Å
|
|
8QPZ
CryoEM structure of recombinant DeltaN7 alpha-synuclein in PBS
Deposited 2023-10-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: 12-meric
|
Chain A
8–140(133 aa)
Chain B
8–140(133 aa)
Chain C
8–140(133 aa)
Chain D
8–140(133 aa)
Chain E
8–140(133 aa)
Chain F
8–140(133 aa)
Chain G
8–140(133 aa)
Chain H
8–140(133 aa)
Chain I
8–140(133 aa)
Chain J
8–140(133 aa)
Chain K
8–140(133 aa)
Chain L
8–140(133 aa)
|
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
Mutation:deltaN7 (methionine kept for expression)
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;137 mM NaCl, 2.7 mM KCl, 8.1 mM Na2HPO4 and 1.5 mM KH2PO4; pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
|
|
8RI9
Late alpha-Synuclein fibril structure from liquid-liquid phase separations.
Deposited 2023-12-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
8RQM
Alpha-synuclein amyloid fibrils
Deposited 2024-01-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8RRR
Alpha-synuclein amyloid fibril
Deposited 2024-01-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8X7B
ThT-bound E46K alpha-synuclein fibrils
Deposited 2023-11-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
TFX 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8X7L
EB-bound E46K alpha-synuclein fibrils
Deposited 2023-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
IZ8 4-azanyl-6-[[4-[4-[(~{E})-(8-azanyl-1-oxidanyl-5,7-disulfo-naphthalen-2-yl)diazenyl]-3-methyl-phenyl]-2-methyl-phenyl]diazenyl]-5-oxidanyl-naphthalene-1,3-disulfonic acid × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8X7M
CR-bound E46K alpha-synuclein fibrils
Deposited 2023-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
CGO sodium 3,3'-(1E,1'E)-biphenyl-4,4'-diylbis(diazene-2,1-diyl)bis(4-aminonaphthalene-1-sulfonate) × 16
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8X7O
PiB-bound E46K mutanted alpha-synuclein fibrils
Deposited 2023-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
Mutation:E46K
|
IZV 2-[4-(methylamino)phenyl]-1,3-benzothiazol-6-ol × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
8X7P
CCA-bound E46K alpha-synuclein fibrils
Deposited 2023-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
V79 copper;trisodium;18-(2-carboxylatoethyl)-20-(carboxylatomethyl)-12-ethenyl-7-ethyl-3,8,13,17-tetramethyl-17,18-dihydroporphyrin-21,23-diide-2-carboxylate × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
8X7Q
pFTAA-bound E46K alpha-synuclein fibrils
Deposited 2023-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
3LS 3''',4'-bis(carboxymethyl)-2,2':5',2'':5'',2''':5''',2''''-quinquethiophene-5,5''''-dicarboxylic acid × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
8X7R
C05-03-bound E46K alpha-synuclein fibrils
Deposited 2023-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
Y9W 2-[(~{E})-4-[6-(methylamino)pyridin-3-yl]but-1-en-3-ynyl]-1,3-benzothiazol-6-ol × 20
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8XWD
Croy-EM structure of alpha synuclein fibril with EGCG
Deposited 2024-01-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
KDH (2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8Y2P
The cryo-EM structure of a-synuclein fibril in Tris buffer.
Deposited 2024-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8Y2Q
The cryo-EM structure of spermine induced a-synuclein fibril in Tris buffer.
Deposited 2024-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
8ZLI
BTA-2-bound E46K alpha-synuclein fibrils
Deposited 2024-05-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
45–99(55 aa)
Chain B
45–99(55 aa)
Chain C
45–99(55 aa)
Chain D
45–99(55 aa)
Chain E
45–99(55 aa)
Chain F
45–99(55 aa)
Chain I
45–99(55 aa)
Chain J
45–99(55 aa)
Chain K
45–99(55 aa)
Chain L
45–99(55 aa)
|
Not recorded
|
A1L13 ~{N},~{N}-dimethyl-4-(6-methyl-1,3-benzothiazol-2-yl)aniline × 10
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8ZLO
F0502B-bound E46K alpha-synuclein fibril
Deposited 2024-05-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: 12-meric
|
Chain A
45–99(55 aa)
Chain B
45–99(55 aa)
Chain C
45–99(55 aa)
Chain D
45–99(55 aa)
Chain E
45–99(55 aa)
Chain F
45–99(55 aa)
Chain G
45–99(55 aa)
Chain H
45–99(55 aa)
Chain I
45–99(55 aa)
Chain J
45–99(55 aa)
Chain O
45–99(55 aa)
Chain T
45–99(55 aa)
|
Not recorded
|
1KI 2-bromanyl-4-[(~{E})-2-[6-[2-(2-fluoranylethoxy)ethyl-methyl-amino]-5-methyl-1,3-benzothiazol-2-yl]ethenyl]phenol × 10
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8ZLP
apo WT polymorph 5a alpha-synuclein fibril
Deposited 2024-05-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–98(98 aa)
Chain B
1–98(98 aa)
Chain C
1–98(98 aa)
Chain F
1–98(98 aa)
Chain G
1–98(98 aa)
Chain H
1–98(98 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
8ZMY
F0502B-bound WT polymorph 5a alpha-synuclein fibril
Deposited 2024-05-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–98(98 aa)
Chain B
1–98(98 aa)
Chain C
1–98(98 aa)
Chain D
1–98(98 aa)
Chain E
1–98(98 aa)
Chain F
1–98(98 aa)
Chain G
1–98(98 aa)
Chain H
1–98(98 aa)
Chain I
1–98(98 aa)
Chain J
1–98(98 aa)
Chain K
1–98(98 aa)
Chain L
1–98(98 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
1KI 2-bromanyl-4-[(~{E})-2-[6-[2-(2-fluoranylethoxy)ethyl-methyl-amino]-5-methyl-1,3-benzothiazol-2-yl]ethenyl]phenol × 15
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
8ZVY
Alpha-Synuclein with H2a-H2b dimer complex structure.
Deposited 2024-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain C
121–140(20 aa)
Chain D
121–140(20 aa)
|
Not recorded
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;291.15 K;100 mM Tris pH 8.0 and 10% PEG 8000.
|
Resolution 1.72 Å
R-free 0.220
|
|
8ZWH
Heparin bound E46K alpha-synuclein fibril
Deposited 2024-06-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
|
|
8ZWI
Chondroitin sulfate bound alpha-synuclein fibril
Deposited 2024-06-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8ZWJ
Polyadenylic acid bound alpha-synuclein fibril Polymorph 1
Deposited 2024-06-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein–RNA
Homooligomer;Protein × 6
PDB declaration: octameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain G
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8ZWK
Polyadenylic acid bound alpha-synuclein fibril Polymorph 2
Deposited 2024-06-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein–RNA
Homooligomer;Protein × 6
PDB declaration: octameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9C5R
Structure of recombinantly assembled alpha-synuclein variant fibrils
Deposited 2024-06-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.61 Å
|
|
9CD9
Structure of type II-2 alpha-synuclein filament from multiple system atrophy
Deposited 2024-06-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 22
PDB declaration: 22-meric
|
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
Chain Q
1–140(140 aa)
Chain R
1–140(140 aa)
Chain S
1–140(140 aa)
Chain T
1–140(140 aa)
Chain U
1–140(140 aa)
Chain V
1–140(140 aa)
Chain W
1–140(140 aa)
Chain X
1–140(140 aa)
Chain Y
1–140(140 aa)
Chain Z
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE;Wait time 30s, blot time 7.5s
|
Resolution 3.20 Å
|
|
9CDA
Structure of type I-2 alpha-synuclein filament from multiple system atrophy
Deposited 2024-06-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 18
PDB declaration: 18-meric
|
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
Chain Q
1–140(140 aa)
Chain R
1–140(140 aa)
Chain S
1–140(140 aa)
Chain T
1–140(140 aa)
Chain U
1–140(140 aa)
Chain V
1–140(140 aa)
Chain W
1–140(140 aa)
Chain X
1–140(140 aa)
Chain Y
1–140(140 aa)
Chain Z
1–140(140 aa)
Chain a
1–140(140 aa)
Chain b
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE;Wait time 30s, blot time 7.5s
|
Resolution 3.30 Å
|
|
9CK3
Cryo-EM structure of in-vitro alpha-synuclein fibril
Deposited 2024-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.04 Å
|
|
9CKK
Cryo-EM structure of acetylated alpha-synuclein A53T fibril - polymorph A
Deposited 2024-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.21 Å
|
|
9CKL
Cryo-EM structure of acetylated alpha-synuclein A53T fibril - polymorph B
Deposited 2024-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;Dulbecco's Phosphate Buffered Saline without calcium chloride and magnesium chloride
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.68 Å
|
|
9CX6
Cryo-EM filament structure in FTLD-synuclein
Deposited 2024-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 20
PDB declaration: eicosameric
|
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
9CX6
Cryo-EM filament structure in FTLD-synuclein
Deposited 2024-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
9D5C
Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils
Deposited 2024-08-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–96(96 aa)
Chain B
1–96(96 aa)
Chain C
1–96(96 aa)
Chain F
1–96(96 aa)
Chain G
1–96(96 aa)
Chain H
1–96(96 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;normal PBS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.80 Å
|
|
9E8U
(Apo)Alpha-synuclein fibril structures from MSA patient brain
Deposited 2024-11-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;30mM Tris-HCl, pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
9E8V
Complex fibril structure of MSA alpha-synuclein with CNS-11g at 4 hours
Deposited 2024-11-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
A1BGB 2-(4-benzyl-1-oxophthalazin-2(1H)-yl)-N-(2,6-dimethylphenyl)acetamide × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;30mM Tris-HCl, pH 7.4, with 1% DMSO
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
9E8W
Complex fibril structure of MSA alpha-synuclein with CNS-11g at 6 hours
Deposited 2024-11-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
A1BGB 2-(4-benzyl-1-oxophthalazin-2(1H)-yl)-N-(2,6-dimethylphenyl)acetamide × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;30mM Tris-HCl, pH 7.4, with 1% DMSO
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
9E8X
Complex fibril structure of MSA alpha-synuclein with CNS-11g at 10 hours
Deposited 2024-11-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
A1BGB 2-(4-benzyl-1-oxophthalazin-2(1H)-yl)-N-(2,6-dimethylphenyl)acetamide × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;30mM Tris-HCl, pH 7.4, with 1% DMSO
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
9E8Y
Complex fibril structure of MSA alpha-synuclein with CNS-11g at 15 hours
Deposited 2024-11-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
A1BGB 2-(4-benzyl-1-oxophthalazin-2(1H)-yl)-N-(2,6-dimethylphenyl)acetamide × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;30mM Tris-HCl, pH 7.4, with 1% DMSO
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
9E9X
Cryo-EM structure of alpha-synuclein filaments derived from the temporal cortex of the case of atypical multiple system atrophy
Deposited 2024-11-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
9EUU
Structure of recombinant alpha-synuclein fibrils 1B capable of seeding GCIs in vivo
Deposited 2024-03-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 18
PDB declaration: 18-meric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
Chain Q
1–140(140 aa)
Chain R
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;NaCl 100 mM, TRIS 20mM
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 1.93 Å
|
|
9FYP
Cryo EM structure of the type 3B polymorph of alpha-synuclein at low pH.
Deposited 2024-07-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
Chain Q
1–140(140 aa)
Chain R
1–140(140 aa)
|
Not recorded
|
CL CHLORIDE ION × 10
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 5.8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 2.23 Å
|
|
9HC6
The L2A-I alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Deposited 2024-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 15
PDB declaration: 15-meric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.79 Å
|
|
9HC7
The L2A-II alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Deposited 2024-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 15
PDB declaration: 15-meric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.85 Å
|
|
9HC8
The L2C alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Deposited 2024-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.82 Å
|
|
9HC9
The L2A-I alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Deposited 2024-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 15
PDB declaration: 15-meric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.76 Å
|
|
9HCA
The L2A-II alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Deposited 2024-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 15
PDB declaration: 15-meric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
9HCB
The L2C alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Deposited 2024-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.95 Å
|
|
9HGR
In vitro grown WT Alpha-Synuclein Fibrils
Deposited 2024-11-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 2.70 Å
|
|
9HGS
In vitro grown G14R Alpha-Synuclein Fibrils
Deposited 2024-11-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.00 Å
|
|
9HXA
In vitro grown K58N Alpha-Synuclein Fibrils
Deposited 2025-01-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.70 Å
|
|
9IC7
Cryo-EM structure of alpha-synuclein fibrils formed in artificial cerebrospinal fluid (aCSF)
Deposited 2025-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 14
PDB declaration: 14-meric
|
Chain a
1–140(140 aa)
Chain b
1–140(140 aa)
Chain c
1–140(140 aa)
Chain d
1–140(140 aa)
Chain e
1–140(140 aa)
Chain f
1–140(140 aa)
Chain g
1–140(140 aa)
Chain h
1–140(140 aa)
Chain i
1–140(140 aa)
Chain j
1–140(140 aa)
Chain k
1–140(140 aa)
Chain l
1–140(140 aa)
Chain m
1–140(140 aa)
Chain n
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.33;Once all components were mixed together, the pH was adjusted by supplementing 1.6 microliters of 25% HCl to yield pH of 7.33.
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 2.90 Å
|
|
9IJP
Polyphosphate bound alpha-synuclein fibril
Deposited 2024-06-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain E
1–140(140 aa)
Chain G
1–140(140 aa)
Chain I
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
7TT Tetraphosphate × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9JBY
The cryo-EM structure of Ac-K58W_G51DA53T a-syn fibril.
Deposited 2024-08-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
37–98(62 aa)
Chain B
37–98(62 aa)
Chain C
37–98(62 aa)
Chain D
37–98(62 aa)
Chain E
37–98(62 aa)
Chain F
37–98(62 aa)
|
Mutation:G51D,A53T,K58W
Mutation:G51D,A53T,K58W
Mutation:G51D,A53T,K58W
Mutation:G51D,A53T,K58W
Mutation:G51D,A53T,K58W
Mutation:G51D,A53T,K58W
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.49 Å
|
|
9JC3
The cryo-EM structure of Ac-G51DA53T P1 a-syn fibril.
Deposited 2024-08-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.39 Å
|
|
9JC4
The cryo-EM structure of Ac-G51DA53T P2 a-syn fibril.
Deposited 2024-08-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.95 Å
|
|
9JC5
The cryo-EM structure of Ac-G51DA53T P3 a-syn fibril.
Deposited 2024-08-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.23 Å
|
|
9JD7
The cryo-EM structure of Ac-G51DA53T a-syn fibril.
Deposited 2024-08-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.57 Å
|
|
9JD8
The cryo-EM structure of Ac-G51DA53T P5 a-syn fibril.
Deposited 2024-08-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 9
PDB declaration: nonameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.86 Å
|
|
9JDK
The cryo-EM structure of Ac-G51DA53T P6 a-syn fibril.
Deposited 2024-08-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
37–99(63 aa)
Chain B
37–99(63 aa)
Chain C
37–99(63 aa)
Chain D
37–99(63 aa)
Chain E
37–99(63 aa)
Chain F
37–99(63 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.32 Å
|
|
9JE2
The cryo-EM structure of Ac-K58N_G51DA53T a-syn fibril.
Deposited 2024-09-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Mutation:K58N,G51D,A53T
Mutation:K58N,G51D,A53T
Mutation:K58N,G51D,A53T
Mutation:K58N,G51D,A53T
Mutation:K58N,G51D,A53T
Mutation:K58N,G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.06 Å
|
|
9JE4
The cryo-EM structure of Ac-E57A_G51DA53T a-syn fibril.
Deposited 2024-09-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
|
Mutation:E57A,G51D,A53T
Mutation:E57A,G51D,A53T
Mutation:E57A,G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.37 Å
|
|
9JE6
The cryo-EM structure of Ac-G51DA53T low salt a-syn fibril.
Deposited 2024-09-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.43 Å
|
|
9JE7
The cryo-EM structure of Ac-E57Q_G51DA53T a-syn fibril.
Deposited 2024-09-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–140(140 aa)
Chain C
1–140(140 aa)
Chain E
1–140(140 aa)
|
Mutation:E57Q,G51D,A53T
Mutation:E57Q,G51D,A53T
Mutation:E57Q,G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.36 Å
|
|
9JE8
The cryo-EM structure of Ac-G51DA53T 30days a-syn fibril.
Deposited 2024-09-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
9JI8
Cryo-EM structure of alpha-synuclein-H21 fibril
Deposited 2024-09-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: 12-meric
|
Chain F
37–99(63 aa)
Fragment:UNP residues 37-99
Chain G
37–99(63 aa)
Fragment:UNP residues 37-99
Chain K
37–99(63 aa)
Fragment:UNP residues 37-99
Chain L
37–99(63 aa)
Fragment:UNP residues 37-99
Chain M
37–99(63 aa)
Fragment:UNP residues 37-99
Chain O
37–99(63 aa)
Fragment:UNP residues 37-99
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.85 Å
|
|
9JKE
The cryo-EM structure of Ac-K58W_G51DA53T P2 a-syn fibril.
Deposited 2024-09-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
37–98(62 aa)
Chain B
37–98(62 aa)
Chain C
37–98(62 aa)
Chain D
37–98(62 aa)
Chain E
37–98(62 aa)
Chain F
37–98(62 aa)
|
Mutation:K58W,G51D,A53T
Mutation:K58W,G51D,A53T
Mutation:K58W,G51D,A53T
Mutation:K58W,G51D,A53T
Mutation:K58W,G51D,A53T
Mutation:K58W,G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9JO6
The complex of alpha-synuclein in the presence of PD6
Deposited 2024-09-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
NMR measurement conditions
pH 7.5;283.15 K;Ionic strength (raw mmCIF value) 0.1627;Pressure 1
NMR measurement conditions
pH 7.5;283.15 K;Ionic strength (raw mmCIF value) 0.1627;Pressure 1
NMR sample composition
0.50 mM [U-100% 13C; U-100% 15N] alpha-synuclein, 1.00 mM PD6, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition
0.20 mM alpha-synuclein, 0.40 mM [U-100% 13C; U-100% 15N] PD6, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
9K7Q
Parkinson disease protein 7 (DJ-1) and Alpha-synuclein (Alpha-syn) complex
Deposited 2024-10-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain M
1–92(92 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.2 M Sodium iodide, 20% w/v Polyethylene glycol 3,350, pH 7.0
|
Resolution 4.58 Å
R-free 0.222
|
|
9KA3
The cryo-EM structure of Ac-K58D_G51DA53T a-syn fibril.
Deposited 2024-10-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Mutation:K58D,G51D,A53T
Mutation:K58D,G51D,A53T
Mutation:K58D,G51D,A53T
Mutation:K58D,G51D,A53T
Mutation:K58D,G51D,A53T
Mutation:K58D,G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.72 Å
|
|
9KA4
The cryo-EM structure of MSA-like fold (P1) formed under the palette stratagy.
Deposited 2024-10-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.42 Å
|
|
9KAL
The cryo-EM structure of Ac-E57A_G51DA53T a-syn fibril.
Deposited 2024-10-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
|
Mutation:E57A,G51D,A53T
Mutation:E57A,G51D,A53T
Mutation:E57A,G51D,A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.36 Å
|
|
9KC2
Cryo-EM structure of ZSQ07-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2024-10-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
|
Not recorded
|
A1EFK 2-[(4~{E})-4-[(~{E})-3-(3-methyl-1,3-benzothiazol-2-yl)prop-2-enylidene]quinolin-1-yl]ethanol × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
9KCN
Cryo-EM structure of FD4-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2024-11-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 24
PDB declaration: 24-meric
|
Chain L
37–140(104 aa)
Chain M
37–140(104 aa)
Chain N
37–140(104 aa)
Chain P
37–140(104 aa)
Chain Q
37–140(104 aa)
Chain R
37–140(104 aa)
Chain d
37–140(104 aa)
Chain e
37–140(104 aa)
Chain f
37–140(104 aa)
Chain h
37–140(104 aa)
Chain i
37–140(104 aa)
Chain j
37–140(104 aa)
|
Not recorded
|
A1EFL (2~{R})-1-fluoranyl-3-[[2-[(~{E})-2-[5-[6-(methylamino)pyridin-3-yl]pyridin-2-yl]ethenyl]-1,3-benzothiazol-6-yl]oxy]propan-2-ol × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
9KCO
Cryo-EM structure of FD4-bound alpha-synuclein MSA-like fibril
Deposited 2024-11-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
Chain Q
1–140(140 aa)
|
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
Mutation:G51D,A53T
|
A1EFL (2~{R})-1-fluoranyl-3-[[2-[(~{E})-2-[5-[6-(methylamino)pyridin-3-yl]pyridin-2-yl]ethenyl]-1,3-benzothiazol-6-yl]oxy]propan-2-ol × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9KCP
Cryo-EM structure of ACI-12589-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2024-11-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
9M5K
The cryo-EM structure of in situ amplified (ISA) alpha-synuclein fibrils from PD homogenate
Deposited 2025-03-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9M5L
The cryo-EM structure of in situ amplified (ISA) alpha-synuclein fibrils from DLB homogenate
Deposited 2025-03-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.27 Å
|
|
9O4B
Cryo-EM structure of in-vitro alpha-synuclein fibril bound with Exemplar-6 PET-radioligand
Deposited 2025-04-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
A1B9H 2-(3,4-dimethylphenoxy)-N-[3-(4-fluorophenyl)-1,2-oxazol-5-yl]acetamide × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.59 Å
|
|
9O9J
Cryo-EM structure of alpha-synuclein filaments from Parkinson's disease with G51D mutaion in SNCA
Deposited 2025-04-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 16
PDB declaration: 20-meric
|
Chain A
1–140(140 aa)
Chain D
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å
|
|
9O9K
Cryo-EM structure of alpha-synuclein filaments from Parkinson's disease with H50Q variant in SNCA
Deposited 2025-04-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 15
PDB declaration: 15-meric
|
Chain A
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
9OBP
Cryo-EM structure of alpha-synuclein filaments derived from the frontal cortex of the case of atypical multiple system atrophy
Deposited 2025-04-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 15
PDB declaration: pentadecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
|
|
9QYL
Alpha-synuclein fibril type 1A polymorph in the presence of ATP
Deposited 2025-04-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 24
PDB declaration: 24-meric
|
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
Chain Q
1–140(140 aa)
Chain e
1–140(140 aa)
Chain f
1–140(140 aa)
Chain g
1–140(140 aa)
Chain h
1–140(140 aa)
Chain j
1–140(140 aa)
Chain k
1–140(140 aa)
Chain l
1–140(140 aa)
Chain m
1–140(140 aa)
Chain n
1–140(140 aa)
Chain o
1–140(140 aa)
Chain p
1–140(140 aa)
Chain q
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;20 mM Tris, 150 mM NaCl, pH 7.5, 1 mM MgCl2, 1 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.08 Å
|
|
9QYN
Alpha-synuclein K21A fibril type 1A polymorph in the presence of ATP
Deposited 2025-04-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;20 mM Tris, 150 mM NaCl, pH 7.5, 1 mM MgCl2, 1 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.13 Å
|
|
9RB3
A53T alpha-synuclein fibril - Type 1
Deposited 2025-05-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9RB6
A53T alpha-synuclein fibril - Type 2
Deposited 2025-05-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.02 Å
|
|
9RB7
Wild-type alpha-synuclein fibril - Type 1
Deposited 2025-05-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.45 Å
|
|
9RB8
Wild-type alpha-synuclein fibril - Type 3-1
Deposited 2025-05-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.64 Å
|
|
9RB9
Wild-type alpha-synuclein fibril - Type 3-2
Deposited 2025-05-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.04 Å
|
|
9RBA
Wild-type alpha-synuclein fibril - Type 4
Deposited 2025-05-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.54 Å
|
|
9RBB
Wild-type alpha-synuclein fibril - Type 5
Deposited 2025-05-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.15 Å
|
|
9RZF
Structure of in-vivo formed alpha-synuclein fibrils purified from a M83+/- mouse brain injected with recombinant 1B fibrils
Deposited 2025-07-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
37–97(61 aa)
Chain B
37–97(61 aa)
Chain C
37–97(61 aa)
Chain D
37–97(61 aa)
Chain E
37–97(61 aa)
Chain F
37–97(61 aa)
|
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
Mutation:A53T
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;50 mM Tris-HCl, 150 mM NaCl, pH7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
9TPT
Structure of recombinantly assembled E83Q alpha-synuclein fibrils
Deposited 2025-12-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: 12-meric
|
Chain A
36–100(65 aa)
Chain B
36–100(65 aa)
Chain C
36–100(65 aa)
Chain D
36–100(65 aa)
Chain E
36–100(65 aa)
Chain F
36–100(65 aa)
Chain H
36–100(65 aa)
Chain I
36–100(65 aa)
Chain J
36–100(65 aa)
Chain L
36–100(65 aa)
Chain M
36–100(65 aa)
Chain N
36–100(65 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.43 Å
|
|
9UF6
Cryo-EM structure of BA1-1-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
|
Not recorded
|
A1EO7 (2~{E})-1-ethyl-2-[(~{E})-3-(1-ethylquinolin-1-ium-2-yl)prop-2-enylidene]quinoline × 24
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
9UFD
Cryo-EM structure of BA12-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
Chain M
1–140(140 aa)
Chain N
1–140(140 aa)
Chain O
1–140(140 aa)
Chain P
1–140(140 aa)
|
Not recorded
|
A1EO8 (2~{Z})-3-ethyl-2-[(~{E})-3-(3-ethyl-1,3-benzothiazol-3-ium-2-yl)prop-2-enylidene]-1,3-benzothiazole × 36
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
9UFF
Cryo-EM structure of BA21-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
A1EO6 ~{N}-(1-ethyl-2-oxidanylidene-benzo[cd]indol-6-yl)-2,5-dimethoxy-benzamide × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
9UFL
Cryo-EM structure of BA22-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
9UFS
Cryo-EM structure of BA23-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
9UFX
Cryo-EM structure of HA11-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
A1EPA 2',4',5',7'-tetrakis(iodanyl)-3',6'-bis(oxidanyl)spiro[2-benzofuran-3,9'-xanthene]-1-one × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
9UFY
Cryo-EM structure of HA21-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
GO3 Gossypol × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
9UG0
Cryo-EM structure of HA31-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
A1EPK 4-[(3~{R},5~{S})-3,5-dimethylpiperidin-1-yl]sulfonyl-~{N}'-(4-methyl-1,3-benzothiazol-2-yl)benzohydrazide × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9UG1
Cryo-EM structure of HA32-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
Chain K
1–140(140 aa)
Chain L
1–140(140 aa)
|
Not recorded
|
A1EPB 4-(3,4-dihydro-1~{H}-isoquinolin-2-ylsulfonyl)-~{N}'-(4-methyl-1,3-benzothiazol-2-yl)benzohydrazide × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
9UJQ
Cryo-EM structure of HQY1027-bound alpha-synuclein fibril polymorph 6A6B
Deposited 2025-04-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
9V6U
The cryo-EM structure of FD4 bound Lewy fold fibril.
Deposited 2025-05-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 15
PDB declaration: pentadecameric
|
Chain c
1–140(140 aa)
Chain d
1–140(140 aa)
Chain e
1–140(140 aa)
Chain f
1–140(140 aa)
Chain g
1–140(140 aa)
Chain h
1–140(140 aa)
Chain i
1–140(140 aa)
Chain j
1–140(140 aa)
Chain k
1–140(140 aa)
Chain o
1–140(140 aa)
Chain p
1–140(140 aa)
Chain q
1–140(140 aa)
Chain r
1–140(140 aa)
Chain s
1–140(140 aa)
Chain t
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
mmCIF provides none of the parsed conditions
|
Resolution 3.30 Å
|
|
9V7C
The cryo-EM structure of FD4_orientation2 bound Lewy fold fibril.
Deposited 2025-05-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 15
PDB declaration: pentadecameric
|
Chain c
32–101(70 aa)
Chain d
32–101(70 aa)
Chain e
32–101(70 aa)
Chain f
32–101(70 aa)
Chain g
32–101(70 aa)
Chain h
32–101(70 aa)
Chain i
32–101(70 aa)
Chain j
32–101(70 aa)
Chain k
32–101(70 aa)
Chain o
32–101(70 aa)
Chain p
32–101(70 aa)
Chain q
32–101(70 aa)
Chain r
32–101(70 aa)
Chain s
32–101(70 aa)
Chain t
32–101(70 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
mmCIF provides none of the parsed conditions
|
Resolution 3.30 Å
|
|
9Y0S
CryoEM structure of alpha-synuclein fibril induced by psychosine
Deposited 2025-08-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 10
PDB declaration: decameric
|
Chain A
1–140(140 aa)
Chain B
1–140(140 aa)
Chain C
1–140(140 aa)
Chain D
1–140(140 aa)
Chain E
1–140(140 aa)
Chain F
1–140(140 aa)
Chain G
1–140(140 aa)
Chain H
1–140(140 aa)
Chain I
1–140(140 aa)
Chain J
1–140(140 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;20 mM Tris-HCl, 150 mM NaCl
cryo-EM vitrification conditions
Cryogen ETHANE
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Resolution 2.72 Å
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