8y6o

Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Pre-mRNA-processing-splicing factor 8

OrganismNot specified

UniProt Q6P2Q9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP8_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–2335; UniProt 1–2335

116 kDa U5 small nuclear ribonucleoprotein component

OrganismNot specified

UniProt Q15029

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U5S1_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–972; UniProt 1–972

U5 small nuclear ribonucleoprotein 200 kDa helicase

OrganismNot specified

UniProt O75643

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U520_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–2136; UniProt 1–2136

U5 small nuclear ribonucleoprotein 40 kDa protein

OrganismNot specified

UniProt Q96DI7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNR40_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–357; UniProt 1–357

Pre-mRNA-processing factor 6

OrganismNot specified

UniProt O94906

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP6_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–941; UniProt 1–941

Thioredoxin-like protein 4B

OrganismNot specified

UniProt Q9NX01

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TXN4B_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–149; UniProt 1–149

Probable ATP-dependent RNA helicase DDX23

OrganismNot specified

UniProt Q9BUQ8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DDX23_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–820; UniProt 1–820

;Small nuclear ribonucleoprotein-associated proteins B and B' ;

OrganismNot specified

UniProt P14678

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RSMB_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain a; PDBConstruct 1–240; UniProt 1–240 Author chain h; PDBConstruct 1–240; UniProt 1–240 Author chain o; PDBConstruct 1–240; UniProt 1–240

Small nuclear ribonucleoprotein Sm D1

OrganismNot specified

UniProt P62314

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD1_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain b; PDBConstruct 1–119; UniProt 1–119 Author chain i; PDBConstruct 1–119; UniProt 1–119 Author chain p; PDBConstruct 1–119; UniProt 1–119

Small nuclear ribonucleoprotein Sm D2

OrganismNot specified

UniProt P62316

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD2_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain c; PDBConstruct 1–118; UniProt 1–118 Author chain j; PDBConstruct 1–118; UniProt 1–118 Author chain q; PDBConstruct 1–118; UniProt 1–118

Small nuclear ribonucleoprotein Sm D3

OrganismNot specified

UniProt P62318

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMD3_HUMAN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain d; PDBConstruct 1–126; UniProt 1–126 Author chain k; PDBConstruct 1–126; UniProt 1–126 Author chain r; PDBConstruct 1–126; UniProt 1–126

Small nuclear ribonucleoprotein E

OrganismNot specified

UniProt P62304

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXE_HUMAN
Isoform —
PDB entities 14
Chains and sequence ranges Author chain e; PDBConstruct 1–92; UniProt 1–92 Author chain l; PDBConstruct 1–92; UniProt 1–92 Author chain s; PDBConstruct 1–92; UniProt 1–92

Small nuclear ribonucleoprotein F

OrganismNot specified

UniProt P62306

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXF_HUMAN
Isoform —
PDB entities 15
Chains and sequence ranges Author chain f; PDBConstruct 1–86; UniProt 1–86 Author chain m; PDBConstruct 1–86; UniProt 1–86 Author chain t; PDBConstruct 1–86; UniProt 1–86

Small nuclear ribonucleoprotein G

OrganismNot specified

UniProt P62308

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RUXG_HUMAN
Isoform —
PDB entities 16
Chains and sequence ranges Author chain g; PDBConstruct 1–76; UniProt 1–76 Author chain n; PDBConstruct 1–76; UniProt 1–76 Author chain u; PDBConstruct 1–76; UniProt 1–76

U4/U6 small nuclear ribonucleoprotein Prp31

OrganismNot specified

UniProt Q8WWY3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP31_HUMAN
Isoform —
PDB entities 19
Chains and sequence ranges Author chain L; PDBConstruct 1–499; UniProt 1–499

U4/U6 small nuclear ribonucleoprotein Prp4

OrganismNot specified

UniProt O43172

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP4_HUMAN
Isoform —
PDB entities 20
Chains and sequence ranges Author chain M; PDBConstruct 1–522; UniProt 1–522

U4/U6 small nuclear ribonucleoprotein Prp3

OrganismNot specified

UniProt O43395

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRPF3_HUMAN
Isoform —
PDB entities 21
Chains and sequence ranges Author chain N; PDBConstruct 1–683; UniProt 1–683

NHP2-like protein 1

OrganismNot specified

UniProt P55769

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NH2L1_HUMAN
Isoform —
PDB entities 22
Chains and sequence ranges Author chain O; PDBConstruct 1–128; UniProt 1–128

Centrosomal AT-AC splicing factor

OrganismNot specified

UniProt Q86UT8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CATAC_HUMAN
Isoform —
PDB entities 23
Chains and sequence ranges Author chain R; PDBConstruct 1–332; UniProt 1–332

Zinc finger matrin-type protein 5

OrganismNot specified

UniProt Q9UDW3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ZMAT5_HUMAN
Isoform —
PDB entities 25
Chains and sequence ranges Author chain V; PDBConstruct 1–170; UniProt 1–170

U11/U12 small nuclear ribonucleoprotein 35 kDa protein

OrganismNot specified

UniProt Q16560

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U1SBP_HUMAN
Isoform —
PDB entities 26
Chains and sequence ranges Author chain W; PDBConstruct 1–246; UniProt 1–246

U11/U12 small nuclear ribonucleoprotein 25 kDa protein

OrganismNot specified

UniProt Q9BV90

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNR25_HUMAN
Isoform —
PDB entities 27
Chains and sequence ranges Author chain X; PDBConstruct 1–132; UniProt 1–132

U11/U12 small nuclear ribonucleoprotein 48 kDa protein

OrganismNot specified

UniProt Q6IEG0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNR48_HUMAN
Isoform —
PDB entities 28
Chains and sequence ranges Author chain Y; PDBConstruct 1–339; UniProt 1–339

Programmed cell death protein 7

OrganismNot specified

UniProt Q8N8D1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PDCD7_HUMAN
Isoform —
PDB entities 29
Chains and sequence ranges Author chain Z; PDBConstruct 1–485; UniProt 1–485

U4/U6.U5 tri-snRNP-associated protein 1

OrganismNot specified

UniProt O43290

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNUT1_HUMAN
Isoform —
PDB entities 30
Chains and sequence ranges Author chain S; PDBConstruct 1–800; UniProt 1–800

U4/U6.U5 tri-snRNP-associated protein 2

OrganismNot specified

UniProt Q53GS9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) Serine/threonine-protein kinase PRP4 homolog × 1 (Q13523) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNUT2_HUMAN
Isoform —
PDB entities 31
Chains and sequence ranges Author chain U; PDBConstruct 1–565; UniProt 1–565

Serine/threonine-protein kinase PRP4 homolog

OrganismNot specified

UniProt Q13523

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 41 RNA 5 pre-mRNA × 1 U5 snRNA × 1 Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) U5 small nuclear ribonucleoprotein 200 kDa helicase × 1 (O75643) U5 small nuclear ribonucleoprotein 40 kDa protein × 1 (Q96DI7) Pre-mRNA-processing factor 6 × 1 (O94906) Thioredoxin-like protein 4B × 1 (Q9NX01) Probable ATP-dependent RNA helicase DDX23 × 1 (Q9BUQ8) ;Small nuclear ribonucleoprotein-associated proteins B and B' ; × 3 (P14678) Small nuclear ribonucleoprotein Sm D1 × 3 (P62314) Small nuclear ribonucleoprotein Sm D2 × 3 (P62316) Small nuclear ribonucleoprotein Sm D3 × 3 (P62318) Small nuclear ribonucleoprotein E × 3 (P62304) Small nuclear ribonucleoprotein F × 3 (P62306) Small nuclear ribonucleoprotein G × 3 (P62308) U4atac snRNA × 1 U6atac snRNA × 1 U4/U6 small nuclear ribonucleoprotein Prp31 × 1 (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp4 × 1 (O43172) U4/U6 small nuclear ribonucleoprotein Prp3 × 1 (O43395) NHP2-like protein 1 × 1 (P55769) Centrosomal AT-AC splicing factor × 1 (Q86UT8) U11 snRNA × 1 Zinc finger matrin-type protein 5 × 1 (Q9UDW3) U11/U12 small nuclear ribonucleoprotein 35 kDa protein × 1 (Q16560) U11/U12 small nuclear ribonucleoprotein 25 kDa protein × 1 (Q9BV90) U11/U12 small nuclear ribonucleoprotein 48 kDa protein × 1 (Q6IEG0) Programmed cell death protein 7 × 1 (Q8N8D1) U4/U6.U5 tri-snRNP-associated protein 1 × 1 (O43290) U4/U6.U5 tri-snRNP-associated protein 2 × 1 (Q53GS9) MAGNESIUM ION × 2 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP4B_HUMAN
Isoform —
PDB entities 32
Chains and sequence ranges Author chain Q; PDBConstruct 1–1007; UniProt 1–1007

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8y6o
Deposition date deposition_date2024-02-02
Structure title titleCryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part
Keywords keywords;spliceosome, minor spliceosome, U11 snRNP, U12 snRNP, U4atac, U6atac, CENATAC, TXNL4B, U11 snRNA, minor tri-snRNP, U12-type intron, SPLICING/RNA, SPLICING-RNA complex ;; SPLICING/RNA
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8y6o__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8y6o__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8y6o__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)95.99 Å
Rg (electron density)95.24 Å
Total Rg95.41 Å
Atom count101504
Residues11916
Excluded volume1782700 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8y6o__assembly_1__model_1 46-meric (46) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (36)

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7. Citations (1)