6ff4

human Bact spliceosome core structure

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

RNA-binding motif protein, X-linked 2

OrganismNot specified

UniProt Q9Y388

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RBMX2_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1; PDBConstruct 1–322; UniProt 1–322

BUD13 homolog

OrganismNot specified

UniProt Q9BRD0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BUD13_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain 3; PDBConstruct 1–619; UniProt 1–619

Splicing factor 3A subunit 2

OrganismNot specified

UniProt Q15428

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3A2_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain 7; PDBConstruct 1–464; UniProt 1–464

Splicing factor 3B subunit 2

OrganismNot specified

UniProt Q13435

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B2_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain 8; PDBConstruct 1–895; UniProt 1–895

Pre-mRNA-processing-splicing factor 8

OrganismNot specified

UniProt Q6P2Q9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP8_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain A; PDBConstruct 1–2335; UniProt 1–2335

116 kDa U5 small nuclear ribonucleoprotein component

OrganismNot specified

UniProt Q15029

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U5S1_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain B; PDBConstruct 1–972; UniProt 1–972

SNW domain-containing protein 1

OrganismNot specified

UniProt Q13573

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SNW1_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain C; PDBConstruct 1–536; UniProt 1–536

Pleiotropic regulator 1

OrganismNot specified

UniProt O43660

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PLRG1_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain D; PDBConstruct 1–514; UniProt 1–514

Pre-mRNA-processing factor 17

OrganismNot specified

UniProt O60508

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRP17_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain E; PDBConstruct 1–579; UniProt 1–579

Cell division cycle 5-like protein

OrganismNot specified

UniProt Q99459

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC5L_HUMAN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain L; PDBConstruct 1–802; UniProt 1–802

Crooked neck-like protein 1

OrganismNot specified

UniProt Q9BZJ0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CRNL1_HUMAN
Isoform —
PDB entities 14
Chains and sequence ranges Author chain O; PDBConstruct 1–848; UniProt 1–848

Pre-mRNA-splicing factor RBM22

OrganismNot specified

UniProt Q9NW64

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RBM22_HUMAN
Isoform —
PDB entities 15
Chains and sequence ranges Author chain P; PDBConstruct 1–420; UniProt 1–420

Protein BUD31 homolog

OrganismNot specified

UniProt P41223

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BUD31_HUMAN
Isoform —
PDB entities 16
Chains and sequence ranges Author chain Q; PDBConstruct 1–144; UniProt 1–144

Spliceosome-associated protein CWC15 homolog

OrganismNot specified

UniProt Q9P013

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CWC15_HUMAN
Isoform —
PDB entities 17
Chains and sequence ranges Author chain R; PDBConstruct 1–229; UniProt 1–229

Serine/arginine repetitive matrix protein 2

OrganismNot specified

UniProt Q9UQ35

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SRRM2_HUMAN
Isoform —
PDB entities 18
Chains and sequence ranges Author chain S; PDBConstruct 1–2752; UniProt 1–2752

Peptidyl-prolyl cis-trans isomerase-like 1

OrganismNot specified

UniProt Q9Y3C6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PPIL1_HUMAN
Isoform —
PDB entities 19
Chains and sequence ranges Author chain V; PDBConstruct 1–166; UniProt 1–166

Serine/arginine repetitive matrix protein 1

OrganismNot specified

UniProt Q8IYB3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SRRM1_HUMAN
Isoform —
PDB entities 20
Chains and sequence ranges Author chain Y; PDBConstruct 1–904; UniProt 1–904

Peptidyl-prolyl cis-trans isomerase CWC27 homolog

OrganismNot specified

UniProt Q6UX04

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CWC27_HUMAN
Isoform —
PDB entities 22
Chains and sequence ranges Author chain s; PDBConstruct 1–472; UniProt 1–472

RING finger protein 113A

OrganismNot specified

UniProt O15541

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name R113A_HUMAN
Isoform —
PDB entities 23
Chains and sequence ranges Author chain t; PDBConstruct 1–343; UniProt 1–343

Splicing factor 3B subunit 1

OrganismNot specified

UniProt O75533

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B1_HUMAN
Isoform —
PDB entities 24
Chains and sequence ranges Author chain u; PDBConstruct 1–1304; UniProt 1–1304

Splicing factor 3B subunit 3

OrganismNot specified

UniProt Q15393

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B3_HUMAN
Isoform —
PDB entities 25
Chains and sequence ranges Author chain v; PDBConstruct 1–1217; UniProt 1–1217

Splicing factor 3B subunit 5

OrganismNot specified

UniProt Q9BWJ5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B5_HUMAN
Isoform —
PDB entities 26
Chains and sequence ranges Author chain x; PDBConstruct 1–86; UniProt 1–86

PHD finger-like domain-containing protein 5A

OrganismNot specified

UniProt Q7RTV0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) Splicing factor 3B subunit 6 × 1 (Q9Y3B4) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PHF5A_HUMAN
Isoform —
PDB entities 27
Chains and sequence ranges Author chain y; PDBConstruct 1–110; UniProt 1–110

Splicing factor 3B subunit 6

OrganismNot specified

UniProt Q9Y3B4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 24 RNA 4 RNA-binding motif protein, X-linked 2 × 1 (Q9Y388) U2 snRNA × 1 BUD13 homolog × 1 (Q9BRD0) U5 snRNA × 1 U6 snRNA × 1 Splicing factor 3A subunit 2 × 1 (Q15428) Splicing factor 3B subunit 2 × 1 (Q13435) Pre-mRNA-processing-splicing factor 8 × 1 (Q6P2Q9) 116 kDa U5 small nuclear ribonucleoprotein component × 1 (Q15029) SNW domain-containing protein 1 × 1 (Q13573) Pleiotropic regulator 1 × 1 (O43660) Pre-mRNA-processing factor 17 × 1 (O60508) Cell division cycle 5-like protein × 1 (Q99459) Crooked neck-like protein 1 × 1 (Q9BZJ0) Pre-mRNA-splicing factor RBM22 × 1 (Q9NW64) Protein BUD31 homolog × 1 (P41223) Spliceosome-associated protein CWC15 homolog × 1 (Q9P013) Serine/arginine repetitive matrix protein 2 × 1 (Q9UQ35) Peptidyl-prolyl cis-trans isomerase-like 1 × 1 (Q9Y3C6) Serine/arginine repetitive matrix protein 1 × 1 (Q8IYB3) pre mRNA × 1 Peptidyl-prolyl cis-trans isomerase CWC27 homolog × 1 (Q6UX04) RING finger protein 113A × 1 (O15541) Splicing factor 3B subunit 1 × 1 (O75533) Splicing factor 3B subunit 3 × 1 (Q15393) Splicing factor 3B subunit 5 × 1 (Q9BWJ5) PHD finger-like domain-containing protein 5A × 1 (Q7RTV0) MAGNESIUM ION × 4 INOSITOL HEXAKISPHOSPHATE × 1 GUANOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 10 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SF3B6_HUMAN
Isoform —
PDB entities 28
Chains and sequence ranges Author chain z; PDBConstruct 1–125; UniProt 1–125

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6ff4
Deposition date deposition_date2018-01-03
Structure title titlehuman Bact spliceosome core structure
Keywords keywordsspliceosome, human, HELA, BACT, dynamics, SPLICING; SPLICING
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6ff4__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6ff4__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6ff4__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)72.29 Å
Rg (electron density)73.02 Å
Total Rg72.91 Å
Atom count72392
Residues8493
Excluded volume1268800 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6ff4__assembly_1__model_1 28-meric (28) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (32)

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6. Fold Classification (SCOP + CATH) 5 domains

CATH v4.4 (5 domains)

Domain ID domain_id6ff4V00
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology100 — Cyclophilin
Homologous superfamily homologous superfamily10 — Cyclophilin-like
Domain ID domain_id6ff4Y00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1390 — PWI domain
Homologous superfamily homologous superfamily10 — PWI domain
Domain ID domain_id6ff4s00
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology100 — Cyclophilin
Homologous superfamily homologous superfamily10 — Cyclophilin-like
Domain ID domain_id6ff4v01
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id6ff4v02
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
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7. Citations (1)