9bz0

Structure of an STK19-containing TC-NER complex

Method: ELECTRON MICROSCOPY
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

DNA-directed RNA polymerase subunit

物种未注明

UniProt A0A7M4DUC2

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A7M4DUC2_PIG
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–1984; UniProt 1–1984

DNA-directed RNA polymerase subunit beta

Sus scrofa

UniProt A0A4X1TVZ5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A4X1TVZ5_PIG
Isoform —
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–1251; UniProt 1–1251

DNA-directed RNA polymerase II subunit RPB3

物种未注明

UniProt A0A481DF93

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A481DF93_PIG
Isoform —
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–275; UniProt 46–320

RNA polymerase Rpb4/RPC9 core domain-containing protein

物种未注明

UniProt A0A8D0KES4

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A8D0KES4_PIG
Isoform —
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–142; UniProt 43–184

DNA-directed RNA polymerase II subunit E

物种未注明

UniProt A0A4X1VTX4

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A4X1VTX4_PIG
Isoform —
PDB实体 5
链与序列区间 作者链 E; PDB构建体 1–210; UniProt 1–210

DNA-directed RNA polymerases I, II, and III subunit RPABC2

物种未注明

UniProt A0A4X1VEK9

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A4X1VEK9_PIG
Isoform —
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–127; UniProt 1–127

DNA-directed RNA polymerase II subunit RPB7

物种未注明

UniProt A0A4X1VKG7

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A4X1VKG7_PIG
Isoform —
PDB实体 7
链与序列区间 作者链 G; PDB构建体 1–172; UniProt 1–172

DNA-directed RNA polymerases I, II, and III subunit RPABC3

物种未注明

UniProt A0A8D1AQR7

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A8D1AQR7_PIG
Isoform —
PDB实体 8
链与序列区间 作者链 H; PDB构建体 1–150; UniProt 1–150

DNA-directed RNA polymerase II subunit RPB9

物种未注明

UniProt P60899

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 RPB9_PIG
Isoform —
PDB实体 9
链与序列区间 作者链 I; PDB构建体 1–125; UniProt 1–125

DNA-directed RNA polymerases I, II, and III subunit RPABC5

物种未注明

UniProt A0A8W4F9W9

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A8W4F9W9_PIG
Isoform —
PDB实体 10
链与序列区间 作者链 J; PDB构建体 1–67; UniProt 1–67

RNA polymerase II subunit J

物种未注明

UniProt A0A8D0TE17

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A8D0TE17_PIG
Isoform —
PDB实体 11
链与序列区间 作者链 K; PDB构建体 1–117; UniProt 1–117

RNA polymerase II subunit K

物种未注明

UniProt A0A4X1TRS6

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

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UniProt名称 A0A4X1TRS6_PIG
Isoform —
PDB实体 12
链与序列区间 作者链 L; PDB构建体 1–58; UniProt 1–58

Transcription elongation factor 1 homolog

Homo sapiens

UniProt A0A2K5RSX0

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A2K5RSX0_CEBIM
Isoform —
PDB实体 13
链与序列区间 作者链 M; PDB构建体 4–85; UniProt 7–88

DNA excision repair protein ERCC-8

Homo sapiens

UniProt Q13216

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ERCC8_HUMAN
Isoform —
PDB实体 17
链与序列区间 作者链 a; PDB构建体 1–396; UniProt 1–396

DNA excision repair protein ERCC-6

Homo sapiens

UniProt Q03468

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ERCC6_HUMAN
Isoform —
PDB实体 18
链与序列区间 作者链 b; PDB构建体 4–1496; UniProt 1–1493

UV-stimulated scaffold protein A

Homo sapiens

UniProt Q2YD98

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 UVSSA_HUMAN
Isoform —
PDB实体 19
链与序列区间 作者链 c; PDB构建体 4–712; UniProt 1–709

DNA damage-binding protein 1

Homo sapiens

UniProt Q16531

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 DDB1_HUMAN
Isoform —
PDB实体 20
链与序列区间 作者链 d; PDB构建体 4–1143; UniProt 1–1140

DET1- and DDB1-associated protein 1

Homo sapiens

UniProt Q9BW61

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 DDA1_HUMAN
Isoform —
PDB实体 21
链与序列区间 作者链 e; PDB构建体 4–105; UniProt 1–102

Inactive serine/threonine-protein kinase 19

Homo sapiens

UniProt P49842

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 STK19_HUMAN
Isoform —
PDB实体 22
链与序列区间 作者链 f; PDB构建体 1–254; UniProt 1–254

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id9bz0
沉积日期 deposition_date2024-05-24
结构标题 titleStructure of an STK19-containing TC-NER complex
关键词 keywordsDNA repair, RNA polymerase II, Co-transcriptional process, TRANSCRIPTION, TRANSCRIPTION-DNA-RNA complex; TRANSCRIPTION/DNA/RNA
实验方法 methodELECTRON MICROSCOPY
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

9bz0__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

9bz0__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

9bz0__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)68.77 Å
Rg(电子密度)69.54 Å
总 Rg69.38 Å
原子数54685
残基数6730
排除体积967880 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 9bz0__assembly_1__model_1 22-meric (22) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (25)

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7. 引用文献 (1)