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6qaj

Structure of the tripartite motif of KAP1/TRIM28

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Endolysin,Transcription intermediary factor 1-beta

Homo sapiens

UniProt P00720

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Homooligomer Protein 2 ZINC ION × 8 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
102l 103l 104l 104l 107l 108l 109l 110l 111l 112l 113l 114l

656 assemblies; showing the first 12

Homodimer
139l 1lwg 2huk 2hul 2hum 3fad 3hwl 3sb6 3sb7 3sb8 3sb9 4ekp

15 assemblies; showing the first 12

Homotetramer
3sbb

1 assemblies

Other homooligomers
1t8g 3sb5 3sb5 3sb5 3sb5 3sb7 3sba

7 assemblies

Heteromeric or nucleic-acid complex
148l 29aj 2qb0 2qb0 2rh1 3d4s 3eml 3ny8 3ny9 3nya 3odu 3oe0

168 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name ENLYS_BPT4
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 26–185； UniProt 2–161 Author chain B； PDBConstruct 26–185； UniProt 2–161

Endolysin,Transcription intermediary factor 1-beta

Homo sapiens

UniProt Q13263

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Homooligomer Protein 2 ZINC ION × 8 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1fp0 2ro1 6i9h

3 assemblies

Homodimer
2yvr

1 assemblies

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
6h3a 6qaj 6qu1 7z36 9cdw 9cdw 9osc

7 assemblies

View Construct and Data Evidence
UniProt name TIF1B_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 187–544； UniProt 56–413 Author chain B； PDBConstruct 187–544； UniProt 56–413

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6qaj
Deposition date deposition_date2018-12-19
Structure title titleStructure of the tripartite motif of KAP1/TRIM28
Keywords keywords;Transcriptional repressor; epigenetic silencing; histone H3 lysine 9 methylation (H3K9me3); endogenous retrovirus; retrotransposon; transposable element; tripartite motif (TRIM); SUMO; ubiquitin; E3 ligase, NUCLEAR PROTEIN ;; NUCLEAR PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6qaj__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6qaj__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6qaj__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）57.08 Å
Rg (electron density)57.55 Å
Total Rg57.68 Å
Atom count13867
Residues880
Excluded volume123630 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6qaj__assembly_1__model_1 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)