8uxx

Arp2/3 branch junction complex, BeFx state

Method: ELECTRON MICROSCOPY Dmax: 219.4 Å Quality: GOOD

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Actin-related protein 3

物种未注明

UniProt P32390

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 15 PDB 声明:pentadecameric(15) 与蛋白拷贝数一致 链 A; UniProt 1–427 未记录 Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Actin, alpha skeletal muscle × 8 (P68135) ADP ADENOSINE-5'-DIPHOSPHATE × 9 MG MAGNESIUM ION × 10 BEF BERYLLIUM TRIFLUORIDE ION × 7 ATP ADENOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE;The samples were incubated on the grid for 50 s and the extra solution was blotted using two Vitrobot filter papers (0.55/20 mm, Grade 595, Ted Pella) for 4 s at 0 blot force. The grids were plunged into liquid ethane at ~180 degrees C with a wait time of 0.5 s. 分辨率 3.20 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 5 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ARP3_SCHPO
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–427; UniProt 1–427

Actin-related protein 2

物种未注明

UniProt Q9UUJ1

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 15 PDB 声明:pentadecameric(15) 与蛋白拷贝数一致 链 B; UniProt 1–390 未记录 Actin-related protein 3 × 1 (P32390) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Actin, alpha skeletal muscle × 8 (P68135) ADP ADENOSINE-5'-DIPHOSPHATE × 9 MG MAGNESIUM ION × 10 BEF BERYLLIUM TRIFLUORIDE ION × 7 ATP ADENOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE;The samples were incubated on the grid for 50 s and the extra solution was blotted using two Vitrobot filter papers (0.55/20 mm, Grade 595, Ted Pella) for 4 s at 0 blot force. The grids were plunged into liquid ethane at ~180 degrees C with a wait time of 0.5 s. 分辨率 3.20 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 4 个其他 PDB 条目、4 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ARP2_SCHPO
Isoform
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–390; UniProt 1–390

Actin-related protein 2/3 complex subunit 1

物种未注明

UniProt P78774

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 15 PDB 声明:pentadecameric(15) 与蛋白拷贝数一致 链 C; UniProt 1–377 未记录 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Actin, alpha skeletal muscle × 8 (P68135) ADP ADENOSINE-5'-DIPHOSPHATE × 9 MG MAGNESIUM ION × 10 BEF BERYLLIUM TRIFLUORIDE ION × 7 ATP ADENOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE;The samples were incubated on the grid for 50 s and the extra solution was blotted using two Vitrobot filter papers (0.55/20 mm, Grade 595, Ted Pella) for 4 s at 0 blot force. The grids were plunged into liquid ethane at ~180 degrees C with a wait time of 0.5 s. 分辨率 3.20 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 5 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ARPC1_SCHPO
Isoform
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–377; UniProt 1–377

Actin-related protein 2/3 complex subunit 2

物种未注明

UniProt O14241

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 15 PDB 声明:pentadecameric(15) 与蛋白拷贝数一致 链 D; UniProt 1–317 未记录 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Actin, alpha skeletal muscle × 8 (P68135) ADP ADENOSINE-5'-DIPHOSPHATE × 9 MG MAGNESIUM ION × 10 BEF BERYLLIUM TRIFLUORIDE ION × 7 ATP ADENOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE;The samples were incubated on the grid for 50 s and the extra solution was blotted using two Vitrobot filter papers (0.55/20 mm, Grade 595, Ted Pella) for 4 s at 0 blot force. The grids were plunged into liquid ethane at ~180 degrees C with a wait time of 0.5 s. 分辨率 3.20 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 5 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ARPC2_SCHPO
Isoform
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–317; UniProt 1–317

Actin-related protein 2/3 complex subunit 3

物种未注明

UniProt Q9Y7J4

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 15 PDB 声明:pentadecameric(15) 与蛋白拷贝数一致 链 E; UniProt 1–174 未记录 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Actin, alpha skeletal muscle × 8 (P68135) ADP ADENOSINE-5'-DIPHOSPHATE × 9 MG MAGNESIUM ION × 10 BEF BERYLLIUM TRIFLUORIDE ION × 7 ATP ADENOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE;The samples were incubated on the grid for 50 s and the extra solution was blotted using two Vitrobot filter papers (0.55/20 mm, Grade 595, Ted Pella) for 4 s at 0 blot force. The grids were plunged into liquid ethane at ~180 degrees C with a wait time of 0.5 s. 分辨率 3.20 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 5 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ARPC3_SCHPO
Isoform
PDB实体 5
链与序列区间 作者链 E; PDB构建体 1–174; UniProt 1–174

Actin-related protein 2/3 complex subunit 4

物种未注明

UniProt Q92352

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 15 PDB 声明:pentadecameric(15) 与蛋白拷贝数一致 链 F; UniProt 1–168 未记录 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) Actin, alpha skeletal muscle × 8 (P68135) ADP ADENOSINE-5'-DIPHOSPHATE × 9 MG MAGNESIUM ION × 10 BEF BERYLLIUM TRIFLUORIDE ION × 7 ATP ADENOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE;The samples were incubated on the grid for 50 s and the extra solution was blotted using two Vitrobot filter papers (0.55/20 mm, Grade 595, Ted Pella) for 4 s at 0 blot force. The grids were plunged into liquid ethane at ~180 degrees C with a wait time of 0.5 s. 分辨率 3.20 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 5 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ARPC4_SCHPO
Isoform
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–168; UniProt 1–168

Actin-related protein 2/3 complex subunit 5

物种未注明

UniProt Q10316

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 15 PDB 声明:pentadecameric(15) 与蛋白拷贝数一致 链 G; UniProt 1–152 未记录 Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin, alpha skeletal muscle × 8 (P68135) ADP ADENOSINE-5'-DIPHOSPHATE × 9 MG MAGNESIUM ION × 10 BEF BERYLLIUM TRIFLUORIDE ION × 7 ATP ADENOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE;The samples were incubated on the grid for 50 s and the extra solution was blotted using two Vitrobot filter papers (0.55/20 mm, Grade 595, Ted Pella) for 4 s at 0 blot force. The grids were plunged into liquid ethane at ~180 degrees C with a wait time of 0.5 s. 分辨率 3.20 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 5 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ARPC5_SCHPO
Isoform
PDB实体 7
链与序列区间 作者链 G; PDB构建体 1–152; UniProt 1–152

Actin, alpha skeletal muscle

物种未注明

UniProt P68135

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 15 PDB 声明:pentadecameric(15) 与蛋白拷贝数一致 链 H; UniProt 1–377 链 I; UniProt 1–377 链 M; UniProt 1–377 链 N; UniProt 1–377 链 O; UniProt 1–377 链 P; UniProt 1–377 链 Q; UniProt 1–377 链 R; UniProt 1–377 非标准单体:是(mmCIF未提供具体位点) Actin-related protein 3 × 1 (P32390) Actin-related protein 2 × 1 (Q9UUJ1) Actin-related protein 2/3 complex subunit 1 × 1 (P78774) Actin-related protein 2/3 complex subunit 2 × 1 (O14241) Actin-related protein 2/3 complex subunit 3 × 1 (Q9Y7J4) Actin-related protein 2/3 complex subunit 4 × 1 (Q92352) Actin-related protein 2/3 complex subunit 5 × 1 (Q10316) ADP ADENOSINE-5'-DIPHOSPHATE × 9 MG MAGNESIUM ION × 10 BEF BERYLLIUM TRIFLUORIDE ION × 7 ATP ADENOSINE-5'-TRIPHOSPHATE × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE;The samples were incubated on the grid for 50 s and the extra solution was blotted using two Vitrobot filter papers (0.55/20 mm, Grade 595, Ted Pella) for 4 s at 0 blot force. The grids were plunged into liquid ethane at ~180 degrees C with a wait time of 0.5 s. 分辨率 3.20 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 293 个其他 PDB 条目、353 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ACTS_RABIT
Isoform
PDB实体 8
链与序列区间 作者链 H; PDB构建体 1–377; UniProt 1–377 作者链 I; PDB构建体 1–377; UniProt 1–377 作者链 M; PDB构建体 1–377; UniProt 1–377 作者链 N; PDB构建体 1–377; UniProt 1–377 作者链 O; PDB构建体 1–377; UniProt 1–377 作者链 P; PDB构建体 1–377; UniProt 1–377 作者链 Q; PDB构建体 1–377; UniProt 1–377 作者链 R; PDB构建体 1–377; UniProt 1–377

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

SAXS 散射曲线 SAXS Profile

SAXS profile for 8uxx

P(r) 距离分布 P(r) Distribution

P(r) distribution for 8uxx
下载 Download

2. 结构基本信息 2. Structure Basics

条目编号 entry_id8uxx
沉积日期 deposition_date2023-11-11
结构标题 titleArp2/3 branch junction complex, BeFx state
关键词 keywordsactin, arp2/3, cytoskeleton, branch, CYTOSOLIC PROTEIN; CYTOSOLIC PROTEIN
实验方法 methodELECTRON MICROSCOPY

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier62.03
回转半径 Rg (电子) rg_electron62.09
零角强度 I(0) i04399000000.00
分子量 molecular_weight556140.0 kDa
排除体积 excluded_volume694480 ų
包络体积 envelope_volume959210 ų
水化壳体积 shell_volume130430 ų
包络直径 envelope_diameter218.9
壳层 Rg shell_rg61.79
包络 Rg envelope_rg61.65
形状 Rg shape_rg62.06
总 Rg total_rg62.17
总原子数 total_atoms77507
残基数 n_residues4908
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax219.4
Rg (实空间) rg_real62.10
Rg 误差 (实空间) rg_real_error2.81
I(0) (实空间) i0_real4.3990e+09
I(0) 误差 (实空间) i0_real_error1.1190e+08
Rg (倒空间) rg_reciprocal61.94
I(0) (倒空间) i0_reciprocal4398000000.0000
解质量估计 total_estimate0.8637
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks1
主峰位置 r_peak_primary70.2
偏度 Skewness skewness0.356
峰度 Kurtosis kurtosis-0.371
角度范围 angular_range— – 0.1250 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha332900000.0000
实空间数据点数 n_real_points26
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.807; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.804

5. 晶体学与实验 5. Crystallography & Experiment

6. 实体与聚合物信息 Entities & Polymers (13)

8. 引用文献 (1)

9. 文件与曲线 (10)