7und

Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38)

Method: ELECTRON MICROSCOPY
▼

1. 蛋白身份与相关结构 Protein Identity & Related Structures

DNA-directed RNA polymerase subunit

物种未注明

UniProt A0A7M4DUC2

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A7M4DUC2_PIG
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–1984; UniProt 1–1984

DNA-directed RNA polymerase subunit beta

物种未注明

UniProt A0A4X1TVZ5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A4X1TVZ5_PIG
Isoform —
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–1251; UniProt 1–1251

DNA-directed RNA polymerase II subunit RPB3

物种未注明

UniProt A0A481DF93

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A481DF93_PIG
Isoform —
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–275; UniProt 46–320

RPOL4c domain-containing protein

物种未注明

UniProt A0A8D1GCS3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A8D1GCS3_PIG
Isoform —
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–184; UniProt 1–184

DNA-directed RNA polymerase II subunit E

物种未注明

UniProt A0A4X1VTX4

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A4X1VTX4_PIG
Isoform —
PDB实体 5
链与序列区间 作者链 E; PDB构建体 1–210; UniProt 1–210

DNA-directed RNA polymerases I, II, and III subunit RPABC2

物种未注明

UniProt A0A4X1VEK9

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A4X1VEK9_PIG
Isoform —
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–127; UniProt 1–127

DNA-directed RNA polymerase II subunit RPB7

物种未注明

UniProt A0A4X1VKG7

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A4X1VKG7_PIG
Isoform —
PDB实体 7
链与序列区间 作者链 G; PDB构建体 1–172; UniProt 1–172

RNA polymerase II subunit K

物种未注明

UniProt A0A4X1TRS6

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A4X1TRS6_PIG
Isoform —
PDB实体 12
链与序列区间 作者链 L; PDB构建体 1–58; UniProt 1–58

Transcription elongation factor SPT6

Homo sapiens

UniProt Q7KZ85

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 SPT6H_HUMAN
Isoform —
PDB实体 13
链与序列区间 作者链 M; PDB构建体 4–1729; UniProt 1–1726

Transcription elongation factor A protein 1

Homo sapiens

UniProt P23193

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 TCEA1_HUMAN
Isoform —
PDB实体 15
链与序列区间 作者链 O; PDB构建体 4–304; UniProt 1–301

RNA polymerase-associated protein CTR9 homolog

Homo sapiens

UniProt Q6PD62

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CTR9_HUMAN
Isoform —
PDB实体 17
链与序列区间 作者链 Q; PDB构建体 1–1173; UniProt 1–1173

RNA polymerase-associated protein RTF1 homolog

Homo sapiens

UniProt Q92541

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RTF1_HUMAN
Isoform —
PDB实体 18
链与序列区间 作者链 R; PDB构建体 4–713; UniProt 1–710

RNA polymerase-associated protein LEO1

Homo sapiens

UniProt Q8WVC0

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 LEO1_HUMAN
Isoform —
PDB实体 20
链与序列区间 作者链 U; PDB构建体 1–666; UniProt 1–666

RNA polymerase II-associated factor 1 homolog

Homo sapiens

UniProt Q8N7H5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PAF1_HUMAN
Isoform —
PDB实体 21
链与序列区间 作者链 V; PDB构建体 1–531; UniProt 1–531

WDR61

Homo sapiens

UniProt Q9GZS3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 WDR61_HUMAN
Isoform —
PDB实体 22
链与序列区间 作者链 W; PDB构建体 1–305; UniProt 1–305

Parafibromin

Homo sapiens

UniProt Q6P1J9

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CDC73_HUMAN
Isoform —
PDB实体 23
链与序列区间 作者链 X; PDB构建体 1–531; UniProt 1–531

Transcription elongation factor SPT4

Homo sapiens

UniProt P63272

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 SPT4H_HUMAN
Isoform —
PDB实体 24
链与序列区间 作者链 Y; PDB构建体 1–117; UniProt 1–117

Transcription elongation factor SPT5

Homo sapiens

UniProt O00267

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 SPT5H_HUMAN
Isoform —
PDB实体 25
链与序列区间 作者链 Z; PDB构建体 1–1087; UniProt 1–1087

Histone H3.2

Xenopus laevis

UniProt P84233

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 H32_XENLA
Isoform —
PDB实体 26
链与序列区间 作者链 a; PDB构建体 1–136; UniProt 1–136 作者链 e; PDB构建体 1–136; UniProt 1–136

Histone H4

Xenopus laevis

UniProt P62799

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H2A × 2 (Q6AZJ8) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 H4_XENLA
Isoform —
PDB实体 27
链与序列区间 作者链 b; PDB构建体 1–103; UniProt 1–103 作者链 f; PDB构建体 1–103; UniProt 1–103

Histone H2A

Xenopus laevis

UniProt Q6AZJ8

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2B 1.1 × 2 (P02281) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q6AZJ8_XENLA
Isoform —
PDB实体 28
链与序列区间 作者链 c; PDB构建体 1–130; UniProt 1–130 作者链 g; PDB构建体 1–130; UniProt 1–130

Histone H2B 1.1

Xenopus laevis

UniProt P02281

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 其他组合 异源复合物 蛋白 30 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RPOL4c domain-containing protein × 1 (A0A8D1GCS3) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) RPB8 × 1 RPB9 × 1 RPB10 × 1 RPB11 × 1 RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Transcription elongation factor A protein 1 × 1 (P23193) RNA × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) Template DNA × 1 RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) WDR61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (P63272) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) ZINC ION × 9 MAGNESIUM ION × 1 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 H2B11_XENLA
Isoform —
PDB实体 29
链与序列区间 作者链 d; PDB构建体 2–123; UniProt 5–126 作者链 h; PDB构建体 2–123; UniProt 5–126

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

▼

2. 结构基本信息 2. Structure Basics

条目编号 entry_id7und
沉积日期 deposition_date2022-04-10
结构标题 titlePol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38)
关键词 keywordsChromatin, nucleosome, transcription, intermediate; TRANSCRIPTION
实验方法 methodELECTRON MICROSCOPY
▼

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

7und__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

7und__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

7und__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)77.13 Å
Rg(电子密度)75.42 Å
总 Rg75.18 Å
原子数129470
残基数8535
排除体积1178500 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 7und__assembly_1__model_1 33-meric (33) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
▶

4. 晶体学与实验 4. Crystallography & Experiment

▶

5. 实体与聚合物信息 Entities & Polymers (31)

▶

7. 引用文献 (1)