7vvd

Crystal Structure of the Kv7.1 C-terminal Domain in Complex with Calmodulin disease mutation Q135P

Method: X-RAY DIFFRACTION Dmax: 86.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium voltage-gated channel subfamily KQT member 1,Potassium voltage-gated channel subfamily KQT member 1

Homo sapiens

UniProt P51787

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 364–397 Chain A; UniProt 503–533 Fragment:C-terminal Domain Calmodulin-1 × 1 (P0DP23) CA CALCIUM ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;291 K;25% PEG 1500, 0.1M MMT pH 8.0 Resolution 3.13 Å R-free 0.274
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 364–397 Chain D; UniProt 503–533 Fragment:C-terminal Domain Calmodulin-1 × 1 (P0DP23) CA CALCIUM ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;291 K;25% PEG 1500, 0.1M MMT pH 8.0 Resolution 3.13 Å R-free 0.274

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

26 other PDB entries and 26 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCNQ1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–34; UniProt 364–397 Author chain A; PDBConstruct 35–65; UniProt 503–533 Author chain D; PDBConstruct 1–34; UniProt 364–397 Author chain D; PDBConstruct 35–65; UniProt 503–533

Calmodulin-1

Homo sapiens

UniProt P0DP23

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 1–149 Mutation:Q135P Potassium voltage-gated channel subfamily KQT member 1,Potassium voltage-gated channel subfamily KQT member 1 × 1 (P51787) CA CALCIUM ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;291 K;25% PEG 1500, 0.1M MMT pH 8.0 Resolution 3.13 Å R-free 0.274
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 1–149 Mutation:Q135P Potassium voltage-gated channel subfamily KQT member 1,Potassium voltage-gated channel subfamily KQT member 1 × 1 (P51787) CA CALCIUM ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;291 K;25% PEG 1500, 0.1M MMT pH 8.0 Resolution 3.13 Å R-free 0.274

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

213 other PDB entries and 278 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CALM1_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–149; UniProt 1–149 Author chain E; PDBConstruct 1–149; UniProt 1–149

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7vvd

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7vvd
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7vvd
Deposition date deposition_date2021-11-05
Structure title titleCrystal Structure of the Kv7.1 C-terminal Domain in Complex with Calmodulin disease mutation Q135P
Keywords keywordsKCNQ1, CaM, SIGNALING PROTEIN, SIGNALING PROTEIN-METAL BINDING PROTEIN complex; SIGNALING PROTEIN/METAL BINDING PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier26.07
Radius of gyration Rg (electron density) rg_electron25.32
Forward intensity I(0) i034381800.00
Molecular weight molecular_weight42223.0 kDa
Excluded volume excluded_volume51500 ų
Envelope volume envelope_volume69147 ų
Hydration-shell volume shell_volume23721 ų
Envelope diameter envelope_diameter88.0
Shell Rg shell_rg31.36
Envelope Rg envelope_rg25.04
Shape Rg shape_rg25.34
Total Rg total_rg25.98
Total atoms total_atoms2964
Residues n_residues409
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax86.1
Rg (real space) rg_real26.10
Rg uncertainty (real space) rg_real_error0.58
I(0) (real space) i0_real3.4380e+07
I(0) uncertainty (real space) i0_real_error4.8740e+05
Rg (reciprocal space) rg_reciprocal26.09
I(0) (reciprocal space) i0_reciprocal34380000.0000
Solution quality estimate total_estimate0.8879
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary25.4
Skewness Skewness skewness0.303
Kurtosis Kurtosis kurtosis-0.596
Angular range angular_range— – 0.3050 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha9997000.0000
Real-space data points n_real_points62
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.880; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.936; Smooth: 0.964

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id7vvdC01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand
Domain ID domain_id7vvdE01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand

8. Citations (1)

9. Files and Curves (10)