9yng

Dynactin and dynein-1 tail region of dynein-dynactin complex on microtubule in the presence of LIS1

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Alpha-centractin

Sus scrofa

UniProt A0A8D1PMN0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8D1PMN0_PIG
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–376; UniProt 1–376 Author chain B; PDBConstruct 1–376; UniProt 1–376 Author chain C; PDBConstruct 1–376; UniProt 1–376 Author chain D; PDBConstruct 1–376; UniProt 1–376 Author chain E; PDBConstruct 1–376; UniProt 1–376 Author chain F; PDBConstruct 1–376; UniProt 1–376 Author chain G; PDBConstruct 1–376; UniProt 1–376 Author chain I; PDBConstruct 1–376; UniProt 1–376

Actin, cytoplasmic 1

Sus scrofa

UniProt Q6QAQ1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ACTB_PIG
Isoform —
PDB entities 2
Chains and sequence ranges Author chain H; PDBConstruct 1–375; UniProt 1–375

Actin-related protein 10

Sus scrofa

UniProt I3LHK5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARP10_PIG
Isoform —
PDB entities 3
Chains and sequence ranges Author chain J; PDBConstruct 1–417; UniProt 1–417

F-actin-capping protein subunit alpha-1

Sus scrofa

UniProt A0PFK5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CAZA1_PIG
Isoform —
PDB entities 4
Chains and sequence ranges Author chain K; PDBConstruct 1–286; UniProt 1–286

F-actin-capping protein subunit beta

Sus scrofa

UniProt A0PFK7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CAPZB_PIG
Isoform —
PDB entities 5
Chains and sequence ranges Author chain L; PDBConstruct 1–272; UniProt 1–272

Dynactin subunit 2

Sus scrofa

UniProt A0A5G2QD80

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DCTN2_PIG
Isoform —
PDB entities 6
Chains and sequence ranges Author chain M; PDBConstruct 1–405; UniProt 1–405 Author chain N; PDBConstruct 1–405; UniProt 1–405 Author chain P; PDBConstruct 1–405; UniProt 1–405 Author chain Q; PDBConstruct 1–405; UniProt 1–405

Dynactin subunit 3

Sus scrofa

UniProt F1SEC0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DCTN3_PIG
Isoform —
PDB entities 7
Chains and sequence ranges Author chain O; PDBConstruct 1–186; UniProt 1–186 Author chain R; PDBConstruct 1–186; UniProt 1–186

Dynactin subunit 6

Sus scrofa

UniProt D0G6S1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DCTN6_PIG
Isoform —
PDB entities 8
Chains and sequence ranges Author chain U; PDBConstruct 1–190; UniProt 1–190

Dynactin subunit 5

Sus scrofa

UniProt A0A286ZK88

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DCTN5_PIG
Isoform —
PDB entities 9
Chains and sequence ranges Author chain V; PDBConstruct 1–182; UniProt 1–182

Dynactin subunit 1

Sus scrofa

UniProt A0A287B8J2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DCTN1_PIG
Isoform —
PDB entities 10
Chains and sequence ranges Author chain W; PDBConstruct 1–1281; UniProt 1–1281 Author chain Z; PDBConstruct 1–1281; UniProt 1–1281

Dynactin subunit 4

Sus scrofa

UniProt A0A4X1TB62

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DCTN4_PIG
Isoform —
PDB entities 11
Chains and sequence ranges Author chain Y; PDBConstruct 1–467; UniProt 1–467

Cytoplasmic dynein 1 heavy chain 1

Homo sapiens

UniProt Q14204

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 intermediate chain 2 × 4 (Q13409) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DYHC1_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain e; PDBConstruct 1–4646; UniProt 1–4646 Author chain f; PDBConstruct 1–4646; UniProt 1–4646 Author chain m; PDBConstruct 1–4646; UniProt 1–4646 Author chain n; PDBConstruct 1–4646; UniProt 1–4646

Cytoplasmic dynein 1 intermediate chain 2

Homo sapiens

UniProt Q13409

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 31 Alpha-centractin × 8 (A0A8D1PMN0) Actin, cytoplasmic 1 × 1 (Q6QAQ1) Actin-related protein 10 × 1 (I3LHK5) F-actin-capping protein subunit alpha-1 × 1 (A0PFK5) F-actin-capping protein subunit beta × 1 (A0PFK7) Dynactin subunit 2 × 4 (A0A5G2QD80) Dynactin subunit 3 × 2 (F1SEC0) Dynactin subunit 6 × 1 (D0G6S1) Dynactin subunit 5 × 1 (A0A286ZK88) Dynactin subunit 1 × 2 (A0A287B8J2) Dynactin subunit 4 × 1 (A0A4X1TB62) Cytoplasmic dynein 1 heavy chain 1 × 4 (Q14204) ADENOSINE-5'-DIPHOSPHATE × 9 ADENOSINE-5'-TRIPHOSPHATE × 1 ZINC ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DC1I2_HUMAN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain g; PDBConstruct 1–638; UniProt 1–638 Author chain h; PDBConstruct 1–638; UniProt 1–638 Author chain o; PDBConstruct 1–638; UniProt 1–638 Author chain p; PDBConstruct 1–638; UniProt 1–638

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9yng
Deposition date deposition_date2025-10-10
Structure title titleDynactin and dynein-1 tail region of dynein-dynactin complex on microtubule in the presence of LIS1
Keywords keywordsDynein-1, Dynactin, MOTOR PROTEIN; MOTOR PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9yng__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9yng__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9yng__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)109.10 Å
Total Rg108.90 Å
Atom count83396
Residues11583
Excluded volume1461900 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9yng__assembly_1__model_1 31-meric (31) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (16)

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7. Citations (1)