|
5NUG
Motor domains from human cytoplasmic dynein-1 in the phi-particle conformation
Deposited 2017-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;20mM HEPES pH7.4, 150 mM KCl, 1mM MgCl2, 5 mM DTT, 0.1 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
5NUG
Motor domains from human cytoplasmic dynein-1 in the phi-particle conformation
Deposited 2017-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;20mM HEPES pH7.4, 150 mM KCl, 1mM MgCl2, 5 mM DTT, 0.1 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
5OWO
Human cytoplasmic Dynein N-Terminus dimerization domain at 1.8 Angstrom resolution
Deposited 2017-09-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–201(201 aa)
Chain B
1–201(201 aa)
Chain C
1–201(201 aa)
Chain D
1–201(201 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 9
MG MAGNESIUM ION × 26
CA CALCIUM ION × 2
NA SODIUM ION × 1
K POTASSIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;291.15 K;100mM Sodium acetate, pH 5.5, 10% Glycerol, 50mM Calcium acetate, 20% PEG 2,000 MME
|
Resolution 1.79 Å
R-free 0.229
|
|
6F1T
Cryo-EM structure of two dynein tail domains bound to dynactin and BICDR1
Deposited 2017-11-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 45
PDB declaration: 45-meric
|
Chain e
1–983(983 aa)
Chain f
1–983(983 aa)
Chain m
1–983(983 aa)
Chain n
1–983(983 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 9
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
6F1U
N terminal region of dynein tail domains in complex with dynactin filament and BICDR-1
Deposited 2017-11-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 13
PDB declaration: tridecameric
|
Chain f
1–1186(1186 aa)
Chain m
1–1186(1186 aa)
Chain n
1–1186(1186 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
6F1V
C terminal region of the dynein heavy chains in the dynein tail/dynactin/BICDR1 complex
Deposited 2017-11-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain f
1–1186(1186 aa)
Chain m
1–1186(1186 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
6F1Y
Dynein light intermediate chain region of the dynein tail/dynactin/BICDR1 complex
Deposited 2017-11-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain f
780–927(148 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
6F38
Cryo-EM structure of two dynein tail domains bound to dynactin and HOOK3
Deposited 2017-11-28
|
Different construct
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 45
PDB declaration: 45-meric
|
Chain e
1–1455(1455 aa)
Chain f
1–1455(1455 aa)
Chain m
1–1455(1455 aa)
Chain n
1–1455(1455 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 9
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.70 Å
|
|
6F3A
Cryo-EM structure of a single dynein tail domain bound to dynactin and BICD2N
Deposited 2017-11-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 36
PDB declaration: 36-meric
|
Chain e
1–1455(1455 aa)
Chain f
1–1455(1455 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 9
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 8.20 Å
|
|
7Z8F
Composite structure of dynein-dynactin-BICDR on microtubules
Deposited 2022-03-17
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 43
PDB declaration: 43-meric
|
Chain e
1–4646(4646 aa)
Chain f
1–4646(4646 aa)
Chain m
1–4646(4646 aa)
Chain n
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
|
ADP ADENOSINE-5'-DIPHOSPHATE × 13
MG MAGNESIUM ION × 14
ATP ADENOSINE-5'-TRIPHOSPHATE × 5
ZN ZINC ION × 3
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;20 second incubation
|
Resolution 20.00 Å
|
|
7Z8G
Cytoplasmic dynein-1 motor domain
Deposited 2022-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;20 second incubation
|
Resolution 3.52 Å
|
|
7Z8H
Cytoplasmic dynein-1 motor domain AAA1, AAA2, and AAA3 subunits
Deposited 2022-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;20 second incubation
|
Resolution 3.41 Å
|
|
7Z8I
The barbed end complex of dynactin bound to BICDR1 and the cytoplasmic dynein tails (A2, B1, B2)
Deposited 2022-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 17
PDB declaration: heptadecameric
|
Chain f
1–4646(4646 aa)
Chain m
1–4646(4646 aa)
Chain n
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
MG MAGNESIUM ION × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;20 second incubation
|
Resolution 3.30 Å
|
|
7Z8J
Cytoplasmic dynein (A2) bound to BICDR1
Deposited 2022-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain f
1–4646(4646 aa)
Chain m
1–4646(4646 aa)
Chain n
1–4646(4646 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;20 second incubation
|
Resolution 3.93 Å
|
|
7Z8K
Cytoplasmic dynein (A1) bound to BICDR1
Deposited 2022-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain e
1–4646(4646 aa)
Chain f
1–4646(4646 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;20 second incubation
|
Resolution 4.37 Å
|
|
7Z8L
Cytoplasmic dynein light intermediate chain (B1) bound to the motor domain (A2).
Deposited 2022-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain f
1–4646(4646 aa)
|
Mutation:E1518K, R1567K
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE;20 second incubation
|
Resolution 4.90 Å
|
|
8DYU
Structure of human cytoplasmic dynein-1 bound to two Lis1 proteins
Deposited 2022-08-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1320–4646(3327 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.00 Å
|
|
8DYV
Structure of human cytoplasmic dynein-1 bound to one Lis1
Deposited 2022-08-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1320–4646(3327 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.97 Å
|
|
8FCY
Engineered human dynein motor domain in microtubule-bound state
Deposited 2022-12-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1458–3281(1824 aa)
Chain A
3412–4646(1235 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;50 mM Tris pH 7.4, 150 mM potassium acetate, 2 mM magnesium acetate, 1 mM EGTA, 1 mM DTT, and 0.1 mM Mg-ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8FD6
Engineered human dynein motor domain in the microtubule-unbound state in the buffer containing ATP-Vi
Deposited 2022-12-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1458–3277(1820 aa)
Chain A
3412–4646(1235 aa)
|
Not recorded
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 3
VO4 VANADATE ION × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;50 mM Tris pH 7.4, 150 mM potassium acetate, 2 mM magnesium acetate, 1 mM EGTA, 1 mM DTT, and 0.1 mM Mg-ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
8FDT
Engineered human dynein motor domain in the microtubule-unbound state with LIS1 complex in the buffer containing ATP-Vi
Deposited 2022-12-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1458–3277(1820 aa)
Chain A
3412–4646(1235 aa)
|
Not recorded
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 3
VO4 VANADATE ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;50 mM Tris pH 7.4, 150 mM potassium acetate, 2 mM magnesium acetate, 1 mM EGTA, 1 mM DTT, and 0.1 mM Mg-ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8FDU
Engineered human dynein motor domain in the microtubule-unbound state with LIS1 complex in the buffer containing ATP-Vi (local refined on AAA3-AAA5 and LIS1)
Deposited 2022-12-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1458–3277(1820 aa)
Chain A
3412–4646(1235 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;50 mM Tris pH 7.4, 150 mM potassium acetate, 2 mM magnesium acetate, 1 mM EGTA, 1 mM DTT, and 0.1 mM Mg-ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
8PQV
Cytoplasmic dynein-1 motor domain in post-powerstroke state
Deposited 2023-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.00 Å
|
|
8PQW
Cytoplasmic dynein-1 motor domain bound to dynactin-p150glued and LIS1
Deposited 2023-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain A
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.20 Å
|
|
8PQY
Cytoplasmic dynein-1 motor domain bound to LIS1
Deposited 2023-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
8PQZ
Cytoplasmic dynein-1 A1/A2 motor domains bound to LIS1
Deposited 2023-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–4646(4646 aa)
Chain J
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
MG MAGNESIUM ION × 4
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.50 Å
|
|
8PR0
Cytoplasmic dynein-A heavy chain bound to dynactin-p150glued and IC-LC tower
Deposited 2023-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 11
PDB declaration: undecameric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 9.40 Å
|
|
8PR1
Cytoplasmic dynein-B heavy chain bound to IC-LC tower
Deposited 2023-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–4646(4646 aa)
Chain G
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 8.20 Å
|
|
8PR2
Cytoplasmic dynein-1 heavy chain bound to JIP3-LZI
Deposited 2023-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain f
1–4646(4646 aa)
Chain m
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
8PR3
Cytoplasmic dynein-1 heavy chain bound to JIP3-RH1
Deposited 2023-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain f
1–4646(4646 aa)
Chain m
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å
|
|
8PTK
Composite structure of Dynein-Dynactin-JIP3-LIS1
Deposited 2023-07-14
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 53
PDB declaration: 53-meric
|
Chain e
1–4646(4646 aa)
Chain f
1–4646(4646 aa)
Chain m
1–4646(4646 aa)
Chain n
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
|
ADP ADENOSINE-5'-DIPHOSPHATE × 16
ATP ADENOSINE-5'-TRIPHOSPHATE × 6
ZN ZINC ION × 3
MG MAGNESIUM ION × 6
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 10.00 Å
|
|
9BLY
Composite structure of full-length human dynein-1 in phi-particle conformation
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: 12-meric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9BLZ
State-1(phi motor) of full-length human dynein-1 in 5mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.20 Å
|
|
9BM0
State-2 of motor domain from full-length human dynein-1 in 5mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
9BM1
State-3 of motor domain from full-length human dynein-1 in 5mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.02 Å
|
|
9BM2
State-4 of motor domain from full-length human dynein-1 in 5 mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.82 Å
|
|
9BM3
State-5a of motor domain from full-length human dynein-1 in 5 mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.49 Å
|
|
9BM4
State-5b of motor domain from full-length human dynein-1 in 5 mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.48 Å
|
|
9BM5
State-6 of motor domain from full-length human dynein-1 in 5 mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9BM6
State-7a of motor domain from full-length human dynein-1 in 5 mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.22 Å
|
|
9BM7
State-7b of motor domain from full-length human dynein-1 in 5 mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.58 Å
|
|
9BM8
State-7c of motor domain from full-length human dynein-1 in 5 mM ATP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.22 Å
|
|
9BMA
Motor domain from full-length human dynein-1 bound to microtubules in apo condition
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 2
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;30 mM HEPES pH 7.2, 60 mM KCl, 1 mM EGTA, 5 mM MgSO4, 1 mM DTT, 5 uM paclitaxel
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
9BMB
Post-1 motor domain from full-length human dynein-1 bound to microtubules in 5mM ADP condition
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;30 mM HEPES pH 7.2, 60 mM KCl, 1 mM EGTA, 5 mM MgSO4, 1 mM DTT, 5 uM paclitaxel, 5mM ADP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
9BMC
Post-2 motor domain from full-length human dynein-1 bound to microtubules in 5mM ADP condition
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;30 mM HEPES pH 7.2, 60 mM KCl, 1 mM EGTA, 5 mM MgSO4, 1 mM DTT, 5 uM paclitaxel, 5mM ADP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9BMD
Motor domain from full-length human dynein-1 bound to microtubules in 5mM AMPPNP condition
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;30 mM HEPES pH 7.2, 60 mM KCl, 1 mM EGTA, 5 mM MgSO4, 1 mM DTT, 5 uM paclitaxel, 5mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
9BMF
State-1(phi motor) of full-length human dynein-1 in 5mM ATPVi
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
AOV ADP ORTHOVANADATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 2
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATPVi
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
9BMG
State-2 of full-length human dynein-1 in 5mM ATPVi
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
AOV ADP ORTHOVANADATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 2
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATPVi
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.86 Å
|
|
9BMH
State-4 of motor domain from full-length human dynein-1 in 5mM ATPVi
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
AOV ADP ORTHOVANADATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 2
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATPVi
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
9BMJ
State-1 of the motor domain from full-length human dynein-1 in 5mM AMPPNP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9BML
State-2 of the motor domain from full-length human dynein-1 in 5mM AMPPNP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
9BMM
State-4 of the motor domain from full-length human dynein-1 in 5mM AMPPNP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9BMN
State-5 of motor domain from full-length human dynein-1 in 5mM AMPPNP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
9BMO
State-6 of motor domain from full-length human dynein-1 in 5mM AMPPNP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
9BMP
State-7 of the motor domain from full-length human dynein-1 in 5mM AMPPNP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9BMR
State-1 of motor domain from full-length human phi dynein-1 in 5 mM ADP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ADP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
9BMS
State-2 of motor domain from full-length human dynein-1 in 5 mM ADP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ADP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.04 Å
|
|
9BMT
State-5 of motor domain from full-length human dynein-1 in 5 mM ADP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ADP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å
|
|
9BMU
State-6 of motor domain from full-length human dynein-1 in 5 mM ADP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ADP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å
|
|
9BMV
State-7a-post1 of motor domain from full-length human dynein-1 in 5 mM ADP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ADP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å
|
|
9BMW
State-7b-post2 of motor domain from full-length human dynein-1 in 5 mM ADP
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ADP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
9BMY
State-1 of motor domain from full-length human dynein-1 in apo condition
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.86 Å
|
|
9BMZ
State-2 of motor domain from full-length human dynein-1 in apo condition
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.97 Å
|
|
9BN0
State-7 of motor domain from full-length human dynein-1 in apo condition
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
9BN1
State-8 of motor domain from full-length human dynein-1 in apo condition
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 2
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
9BN3
The alpha registry-locked dynein motor domain mutant in 5mM ATP condition, class1
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
9BN4
The alpha registry-locked dynein motor domain mutant in 5mM ATP condition, class2
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
9BN5
The alpha registry-locked dynein motor domain mutant in 5mM ATPVi condition, class1
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATPVi
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
9BN6
The alpha registry-locked dynein motor domain mutant in 5mM ATPVi condition, class2
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 5 mM ATPVi
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9DH5
State-1 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Deposited 2024-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 5 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
9DH6
State-2 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Deposited 2024-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 5 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9DH7
State-4 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Deposited 2024-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 5 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9DH8
State-5 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Deposited 2024-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 5 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9DH9
State-7-Post-2 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Deposited 2024-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 5 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9DHA
State-7-Post-1 of the motor domain from full-length human dynein-1 in 5mM AMPPNP with 5mM Mg2+
Deposited 2024-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 5 mM MgCl2, 5 mM DTT, 5 mM AMPPNP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
9DZY
Cryo-EM structure of Pre-Chi dynein bound to Lis1
Deposited 2024-10-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–4646(4645 aa)
Chain B
2–4646(4645 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.10 Å
|
|
9E0K
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Deposited 2024-10-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–4646(4645 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.20 Å
|
|
9E0T
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Deposited 2024-10-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
2–4646(4645 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.10 Å
|
|
9E0U
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Deposited 2024-10-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–4646(4645 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.40 Å
|
|
9E0W
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Deposited 2024-10-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–4646(4645 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.20 Å
|
|
9E0X
Cryo-EM structure of Phi dynein
Deposited 2024-10-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–4646(4645 aa)
Chain B
2–4646(4645 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 2.70 Å
|
|
9E0Y
Cryo-EM structure of human cytoplasmic dynein-1 in the presence of ATP
Deposited 2024-10-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–4646(4645 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.40 Å
|
|
9E0Z
Dimeric motor domains from phi-like dynein-1 bound to a Lis1 dimer under Nde1-Lis1 condition
Deposited 2024-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 3 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.86 Å
|
|
9E10
Dimeric motor domains from phi dynein-1 under Lis1 condition
Deposited 2024-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 3 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.71 Å
|
|
9E11
Dimeric motor domains from phi-like dynein-1 bound to a Lis1 dimer under Lis1 condition
Deposited 2024-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.86 Å
|
|
9E12
Full-length human dynein-1 in phi comformation under Lis1 condition
Deposited 2024-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.50 Å
|
|
9E13
Full-length human dynein-1 in phi-like comformation bound to a Lis1 dimer under Lis1 condition
Deposited 2024-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 3 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.50 Å
|
|
9E14
Full-length human dynein-1 in phi-like comformation bound to a Lis1 dimer under Nde1-Lis1 condition
Deposited 2024-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2;25 mM HEPES pH 7.2, 150 mM KCl, 1 mM MgCl2, 5 mM DTT, 3 mM ATP
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.00 Å
|
|
9E22
Cryo-EM structure of human cytoplasmic dynein-1 bound to LIS1 in the presence of ATP
Deposited 2024-10-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–4646(4645 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.30 Å
|
|
9E23
Cryo-EM structure of Pre-Chi dynein tail
Deposited 2024-10-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 16
PDB declaration: 16-meric
|
Chain A
2–4646(4645 aa)
Chain G
2–4646(4645 aa)
Chain e
2–4646(4645 aa)
Chain f
2–4646(4645 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 6.20 Å
|
|
9E28
Cryo-EM structure of Phi dynein tail
Deposited 2024-10-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 16
PDB declaration: 16-meric
|
Chain A
2–4646(4645 aa)
Chain G
2–4646(4645 aa)
Chain e
2–4646(4645 aa)
Chain f
2–4646(4645 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 4.40 Å
|
|
9HHL
Structure of Dynein-Dynactin-NuMA-LIS1
Deposited 2024-11-21
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 41
PDB declaration: 41-meric
|
Chain e
1–4646(4646 aa)
Chain f
1–4646(4646 aa)
Chain m
1–4646(4646 aa)
Chain n
1–4646(4646 aa)
|
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
Mutation:R1567E, K1610E
|
ADP ADENOSINE-5'-DIPHOSPHATE × 8
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
ZN ZINC ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.53 Å
|
|
9YNC
Motor domains of phi-like human dynein-1 bound to dynactin-p150glued and LIS1
Deposited 2025-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 10
PDB declaration: decameric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.93 Å
|
|
9YND
Motor domain of human dynein-1 in pre-power stroke bound to dynactin-p150glued-CC1B and LIS1
Deposited 2025-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
MG MAGNESIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.26 Å
|
|
9YNE
Motor domain of human dynein-1 in pre-power stroke bound to dynactin-p150glued-CC1B-ICD and LIS1
Deposited 2025-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 3
MG MAGNESIUM ION × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 8.46 Å
|
|
9YNF
Motor domain of human dynein-1 in post1 state
Deposited 2025-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.92 Å
|
|
9YNH
Full-length human cytoplasmic dynein-1 in phi-like state bound to dynactin-p150glued and LIS1
Deposited 2025-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 18
PDB declaration: octadecameric
|
Chain A
1–4646(4646 aa)
Chain B
1–4646(4646 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 6
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.50 Å
|