7jni

Crystal structure of the angiotensin II type 2 receptoror (AT2R) in complex with EMA401

Method: X-RAY DIFFRACTION Dmax: 106.2 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Soluble cytochrome b562,Type-2 angiotensin II receptor

Homo sapiens

UniProt P0ABE7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 23–128 Mutation:M29W,H124I,R128L in cyt b562 Non-standard monomer:Yes (specific site not provided by mmCIF) VFD Olodanrigan × 1 OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 3 OLA OLEIC ACID × 3 FMT FORMIC ACID × 1 HEZ HEXANE-1,6-DIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:LIPIDIC CUBIC PHASE;293 K;Tris-HCl pH 8.0, Potassium Formate, PEG400, and 1,6-hexanediol Resolution 3.00 Å R-free 0.273
2 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 23–128 Mutation:M29W,H124I,R128L in cyt b562 Non-standard monomer:Yes (specific site not provided by mmCIF) VFD Olodanrigan × 1 OLA OLEIC ACID × 1 X-RAY DIFFRACTION X-ray crystallization conditions:LIPIDIC CUBIC PHASE;293 K;Tris-HCl pH 8.0, Potassium Formate, PEG400, and 1,6-hexanediol Resolution 3.00 Å R-free 0.273

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

714 other PDB entries and 821 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C562_ECOLX
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–107; UniProt 23–128 Author chain B; PDBConstruct 2–107; UniProt 23–128

Soluble cytochrome b562,Type-2 angiotensin II receptor

Homo sapiens

UniProt P50052

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 35–335 Mutation:M29W,H124I,R128L in cyt b562 Non-standard monomer:Yes (specific site not provided by mmCIF) VFD Olodanrigan × 1 OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 3 OLA OLEIC ACID × 3 FMT FORMIC ACID × 1 HEZ HEXANE-1,6-DIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:LIPIDIC CUBIC PHASE;293 K;Tris-HCl pH 8.0, Potassium Formate, PEG400, and 1,6-hexanediol Resolution 3.00 Å R-free 0.273
2 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 35–335 Mutation:M29W,H124I,R128L in cyt b562 Non-standard monomer:Yes (specific site not provided by mmCIF) VFD Olodanrigan × 1 OLA OLEIC ACID × 1 X-RAY DIFFRACTION X-ray crystallization conditions:LIPIDIC CUBIC PHASE;293 K;Tris-HCl pH 8.0, Potassium Formate, PEG400, and 1,6-hexanediol Resolution 3.00 Å R-free 0.273

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

6 other PDB entries and 6 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name AGTR2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 112–412; UniProt 35–335 Author chain B; PDBConstruct 112–412; UniProt 35–335

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7jni

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7jni
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7jni
Deposition date deposition_date2020-08-04
Structure title titleCrystal structure of the angiotensin II type 2 receptoror (AT2R) in complex with EMA401
Keywords keywords;angiotensin II type 2 receptor, AT2R, EMA401, PD-126055, G protein-coupled receptor, GPCR, BRIL fusion, Glioblastoma, GBM, membrane protein, LCP ;; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier33.22
Radius of gyration Rg (electron density) rg_electron31.77
Forward intensity I(0) i0111730000.00
Molecular weight molecular_weight93124.0 kDa
Excluded volume excluded_volume120310 ų
Envelope volume envelope_volume150600 ų
Hydration-shell volume shell_volume39721 ų
Envelope diameter envelope_diameter113.8
Shell Rg shell_rg38.46
Envelope Rg envelope_rg31.76
Shape Rg shape_rg31.75
Total Rg total_rg32.46
Total atoms total_atoms6568
Residues n_residues801
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax106.2
Rg (real space) rg_real33.20
Rg uncertainty (real space) rg_real_error0.82
I(0) (real space) i0_real1.1170e+08
I(0) uncertainty (real space) i0_real_error1.9080e+06
Rg (reciprocal space) rg_reciprocal33.21
I(0) (reciprocal space) i0_reciprocal111700000.0000
Solution quality estimate total_estimate0.9005
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary39.8
Skewness Skewness skewness0.260
Kurtosis Kurtosis kurtosis-0.511
Angular range angular_range— – 0.2400 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha14700000.0000
Real-space data points n_real_points49
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.950; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.989; Smooth: 0.861

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

8. Citations (1)

9. Files and Curves (10)