Crystal Structure of Native Cytochrome b562 in complex with the synthetic anti-BRIL antibody BAG2.

entry_id	9tmp
deposition_date	2025-12-15
title	Crystal Structure of Native Cytochrome b562 in complex with the synthetic anti-BRIL antibody BAG2.
keywords	Cytochrome, Fab, BRIL, PROTEIN BINDING; PROTEIN BINDING
method	X-RAY DIFFRACTION

rg_guinier	28.81 Å
rg_electron	28.29 Å
i0	57466300.00
molecular_weight	58797.0 kDa
excluded_volume	73204 ų
envelope_volume	92696 ų
shell_volume	28789 ų
envelope_diameter	101.4 Å
shell_rg	34.11 Å
envelope_rg	28.25 Å
shape_rg	28.26 Å
total_rg	28.94 Å
total_atoms	4852
n_residues	542
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	95.2 Å
rg_real	28.97 Å
rg_real_error	0.74 Å
i0_real	5.7470e+07
i0_real_error	9.0020e+05
rg_reciprocal	28.91 Å
i0_reciprocal	57460000.0000
total_estimate	0.8640
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	31.1 Å
skewness	0.517
kurtosis	-0.233
angular_range	— – 0.2750 Å−1
current_alpha	0.0000
highest_alpha	9705000.0000
n_real_points	56
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.848; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.879; Smooth: 0.806

Unit Cell

length_a	88.730 Å
length_b	88.730 Å
length_c	162.530 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

Symmetry

space_group	P 65
int_tables_number	170
crystal_system	hexagonal

Refinement

resolution	2.650 Å
resolution_low	44.280 Å
r_factor	0.2090
r_work	0.2074
r_free	0.2375

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/tm/9tmp/pr_distribution.json
• pr_output /app/data/pr_computation/tm/9tmp/9tmp.pr.out
• pr_plot /app/data/visualization/pr_computation/tm/9tmp/9tmp_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/tm/9tmp/9tmp.dat
• saxs_fit /app/data/saxs_computation/tm/9tmp/9tmp.fit
• saxs_log /app/data/saxs_computation/tm/9tmp/9tmp.log
• saxs_plot /app/data/visualization/saxs_computation/tm/9tmp/9tmp_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/tm/9tmp/9tmp.fit
pddf	/app/data/pr_computation/tm/9tmp/9tmp.pr.out
profile	/app/data/saxs_computation/tm/9tmp/9tmp.dat