7c6a

Crystal structure of AT2R-BRIL and SRP2070_Fab complex

Method: X-RAY DIFFRACTION Dmax: 148.7 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Type-2 angiotensin II receptor,Soluble cytochrome b562,Type-2 angiotensin II receptor

Homo sapiens

UniProt P0ABE7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 23–128 Mutation:L93V, F133W, M1007W, H1102I, R1106L IgG Light Chain × 1 IgG heavy chain × 1 SAR1, ILE8-ANGIOTENSIN II × 1 X-RAY DIFFRACTION X-ray crystallization conditions:LIPIDIC CUBIC PHASE;293 K;0.05M POTASSIUM ACETATE, 0.1M MES PH6.5, 26-36% PEG300 Resolution 3.40 Å R-free 0.285

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

714 other PDB entries and 822 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C562_ECOLX
Isoform
PDB entities 3
Chains and sequence ranges Author chain A; PDBConstruct 210–315; UniProt 23–128

Type-2 angiotensin II receptor,Soluble cytochrome b562,Type-2 angiotensin II receptor

Homo sapiens

UniProt P50052

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 35–242 Chain A; UniProt 246–346 Mutation:L93V, F133W, M1007W, H1102I, R1106L IgG Light Chain × 1 IgG heavy chain × 1 SAR1, ILE8-ANGIOTENSIN II × 1 X-RAY DIFFRACTION X-ray crystallization conditions:LIPIDIC CUBIC PHASE;293 K;0.05M POTASSIUM ACETATE, 0.1M MES PH6.5, 26-36% PEG300 Resolution 3.40 Å R-free 0.285

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

6 other PDB entries and 7 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name AGTR2_HUMAN
Isoform
PDB entities 3
Chains and sequence ranges Author chain A; PDBConstruct 2–209; UniProt 35–242 Author chain A; PDBConstruct 316–416; UniProt 246–346

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7c6a

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7c6a
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id7c6a
Deposition date deposition_date2020-05-21
Structure title titleCrystal structure of AT2R-BRIL and SRP2070_Fab complex
Keywords keywordsGPCR, BRIL, Crystallization, Antibody, SIGNALING PROTEIN; SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier42.34
Radius of gyration Rg (electron density) rg_electron43.05
Forward intensity I(0) i0114671000.00
Molecular weight molecular_weight90143.0 kDa
Excluded volume excluded_volume114060 ų
Envelope volume envelope_volume164660 ų
Hydration-shell volume shell_volume34215 ų
Envelope diameter envelope_diameter145.5
Shell Rg shell_rg44.22
Envelope Rg envelope_rg41.56
Shape Rg shape_rg43.02
Total Rg total_rg43.20
Total atoms total_atoms6352
Residues n_residues810
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax148.7
Rg (real space) rg_real42.79
Rg uncertainty (real space) rg_real_error2.15
I(0) (real space) i0_real1.1470e+08
I(0) uncertainty (real space) i0_real_error2.5760e+06
Rg (reciprocal space) rg_reciprocal42.35
I(0) (reciprocal space) i0_reciprocal114600000.0000
Solution quality estimate total_estimate0.7493
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary28.1
Skewness Skewness skewness0.438
Kurtosis Kurtosis kurtosis-0.658
Angular range angular_range— – 0.1850 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha7389000.0000
Real-space data points n_real_points38
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.542; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.403; Smooth: 0.707

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id7c6aH01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7c6aH02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7c6aL01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7c6aL02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (1)

9. Files and Curves (10)