← Back to search

1duz

HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A 0201) IN COMPLEX WITH A NONAMERIC PEPTIDE FROM HTLV-1 TAX PROTEIN

Method: X-RAY DIFFRACTION D_max: 132.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1duz
deposition_date	2000-01-19
title	HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A 0201) IN COMPLEX WITH A NONAMERIC PEPTIDE FROM HTLV-1 TAX PROTEIN
keywords	Immunoglobulin fold, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	39.19 Å
rg_electron	39.08 Å
i0	130286000.00
molecular_weight	89464.0 kDa
excluded_volume	110510 Å³
envelope_volume	155350 Å³
shell_volume	34289 Å³
envelope_diameter	136.2 Å
shell_rg	42.81 Å
envelope_rg	38.54 Å
shape_rg	39.05 Å
total_rg	39.39 Å
total_atoms	6322
n_residues	768
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	132.8 Å
rg_real	39.56 Å
rg_real_error	1.38 Å
i0_real	1.3030e+08
i0_real_error	2.4430e+06
rg_reciprocal	39.34 Å
i0_reciprocal	130300000.0000
total_estimate	0.8259
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	33.2 Å
skewness	0.401
kurtosis	-0.631
angular_range	— – 0.2000 Å⁻¹
current_alpha	0.0000
highest_alpha	9633000.0000
n_real_points	41
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.784; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.692; Smooth: 0.690

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	HLA-A*0201
formula_weight	31854.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,D
atom_count	6930

GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 polymer

description	BETA-2 MICROGLOBULIN
formula_weight	11879.4 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,E

MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 3 polymer

description	HTLV-1 OCTAMERIC TAX PEPTIDE
formula_weight	1070.3 kDa
src_method	syn
entity_count	2

Polymer

type	polypeptide(L)
strand_id	C,F

LLFGYPVYV

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	608

▶

6. Citations (2)

▶

length_a	50.560 Å
length_b	63.790 Å
length_c	75.080 Å
angle_alpha	81.58 °
angle_beta	75.66 °
angle_gamma	77.38 °
z_pdb	2

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	1.800 Å
resolution_low	50.000 Å
r_factor	0.2030
r_work	0.1977
r_free	0.2502

fit	/app/data/saxs_computation/du/1duz/1duz.fit
pddf	/app/data/pr_computation/du/1duz/1duz.pr.out
profile	/app/data/saxs_computation/du/1duz/1duz.dat

HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A 0201) IN COMPLEX WITH A NONAMERIC PEPTIDE FROM HTLV-1 TAX PROTEIN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Entity 4 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)