8fee

Structure of Mce1 transporter from Mycobacterium smegmatis in the absence of LucB (Map2)

Method: ELECTRON MICROSCOPY

1. Protein Identity and Related Structures Protein Identity & Related Structures

Virulence factor Mce family protein

OrganismNot specified

UniProt A0QNR2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain A; UniProt 1–409 Not recorded Virulence factor Mce family protein × 1 (A0QNR3) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor mce family protein × 1 (A0QNR5) Virulence factor Mce family protein × 1 (A0QNR6) Mce-family protein mce1f × 1 (A0QNR7) ABC transporter, ATP-binding protein,Green fluorescent protein chimera × 2 (A0QS64,P42212) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

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UniProt name A0QNR2_MYCS2
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–409; UniProt 1–409

Virulence factor Mce family protein

OrganismNot specified

UniProt A0QNR3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain B; UniProt 1–343 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor mce family protein × 1 (A0QNR5) Virulence factor Mce family protein × 1 (A0QNR6) Mce-family protein mce1f × 1 (A0QNR7) ABC transporter, ATP-binding protein,Green fluorescent protein chimera × 2 (A0QS64,P42212) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0QNR3_MYCS2
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–343; UniProt 1–343

MCE-family protein MCE1c

OrganismNot specified

UniProt I7G2J2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain C; UniProt 1–524 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) Virulence factor Mce family protein × 1 (A0QNR3) Virulence factor mce family protein × 1 (A0QNR5) Virulence factor Mce family protein × 1 (A0QNR6) Mce-family protein mce1f × 1 (A0QNR7) ABC transporter, ATP-binding protein,Green fluorescent protein chimera × 2 (A0QS64,P42212) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I7G2J2_MYCS2
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–524; UniProt 1–524

Virulence factor mce family protein

OrganismNot specified

UniProt A0QNR5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain D; UniProt 1–547 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) Virulence factor Mce family protein × 1 (A0QNR3) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor Mce family protein × 1 (A0QNR6) Mce-family protein mce1f × 1 (A0QNR7) ABC transporter, ATP-binding protein,Green fluorescent protein chimera × 2 (A0QS64,P42212) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0QNR5_MYCS2
Isoform
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–547; UniProt 1–547

Virulence factor Mce family protein

OrganismNot specified

UniProt A0QNR6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain E; UniProt 1–390 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) Virulence factor Mce family protein × 1 (A0QNR3) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor mce family protein × 1 (A0QNR5) Mce-family protein mce1f × 1 (A0QNR7) ABC transporter, ATP-binding protein,Green fluorescent protein chimera × 2 (A0QS64,P42212) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

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UniProt name A0QNR6_MYCS2
Isoform
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–390; UniProt 1–390

Mce-family protein mce1f

OrganismNot specified

UniProt A0QNR7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain F; UniProt 1–518 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) Virulence factor Mce family protein × 1 (A0QNR3) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor mce family protein × 1 (A0QNR5) Virulence factor Mce family protein × 1 (A0QNR6) ABC transporter, ATP-binding protein,Green fluorescent protein chimera × 2 (A0QS64,P42212) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0QNR7_MYCS2
Isoform
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–518; UniProt 1–518

ABC transporter, ATP-binding protein,Green fluorescent protein chimera

OrganismNot specified

UniProt A0QS64

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain G; UniProt 1–360 Chain H; UniProt 1–360 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) Virulence factor Mce family protein × 1 (A0QNR3) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor mce family protein × 1 (A0QNR5) Virulence factor Mce family protein × 1 (A0QNR6) Mce-family protein mce1f × 1 (A0QNR7) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0QS64_MYCS2
Isoform
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–360; UniProt 1–360 Author chain H; PDBConstruct 1–360; UniProt 1–360

ABC transporter, ATP-binding protein,Green fluorescent protein chimera

OrganismNot specified

UniProt P42212

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain G; UniProt 33–238 Chain H; UniProt 33–238 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) Virulence factor Mce family protein × 1 (A0QNR3) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor mce family protein × 1 (A0QNR5) Virulence factor Mce family protein × 1 (A0QNR6) Mce-family protein mce1f × 1 (A0QNR7) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

568 other PDB entries and 744 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GFP_AEQVI
Isoform
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 424–629; UniProt 33–238 Author chain H; PDBConstruct 424–629; UniProt 33–238

Conserved hypothetical integral membrane protein Yrbe1a

OrganismNot specified

UniProt I7F4Q4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain I; UniProt 1–266 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) Virulence factor Mce family protein × 1 (A0QNR3) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor mce family protein × 1 (A0QNR5) Virulence factor Mce family protein × 1 (A0QNR6) Mce-family protein mce1f × 1 (A0QNR7) ABC transporter, ATP-binding protein,Green fluorescent protein chimera × 2 (A0QS64,P42212) ABC-transporter integral membrane protein × 1 (A0QNR1) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I7F4Q4_MYCS2
Isoform
PDB entities 8
Chains and sequence ranges Author chain I; PDBConstruct 1–266; UniProt 1–266

ABC-transporter integral membrane protein

OrganismNot specified

UniProt A0QNR1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain J; UniProt 1–289 Not recorded Virulence factor Mce family protein × 1 (A0QNR2) Virulence factor Mce family protein × 1 (A0QNR3) MCE-family protein MCE1c × 1 (I7G2J2) Virulence factor mce family protein × 1 (A0QNR5) Virulence factor Mce family protein × 1 (A0QNR6) Mce-family protein mce1f × 1 (A0QNR7) ABC transporter, ATP-binding protein,Green fluorescent protein chimera × 2 (A0QS64,P42212) Conserved hypothetical integral membrane protein Yrbe1a × 1 (I7F4Q4) UNL UNKNOWN LIGAND × 31 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0QNR1_MYCS2
Isoform
PDB entities 9
Chains and sequence ranges Author chain J; PDBConstruct 1–289; UniProt 1–289

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

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P(r) Distance Distribution P(r) Distribution

暂无 P(r) 图
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8fee
Deposition date deposition_date2022-12-06
Structure title titleStructure of Mce1 transporter from Mycobacterium smegmatis in the absence of LucB (Map2)
Keywords keywordsMembrane protein complex, ABC transporter, Virulence factor, Lipid transport, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

该条目暂无 SAXS 数据。

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

该条目暂无 P(r) 分析数据。

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (10)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id8feeG01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id8feeH01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases

8. Citations (1)

9. Files and Curves (0)