|
1B9C
Green Fluorescent Protein Mutant F99S, M153T and V163A
Deposited 1999-02-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
Chain D
1–238(238 aa)
|
Mutation:F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.3;22% PEG 4000, 50 MM HEPES PH 8.5, 50 MM MGCL2, 10 MM 2-MERCAPTOETHANOL, 23% MG/ ML PROTEINA, pH 8.3
|
Resolution 2.40 Å
R-free 0.280
|
|
1BFP
BLUE VARIANT OF GREEN FLUORESCENT PROTEIN
Deposited 1997-04-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65, H66, AND G67 ARE REPLACED WITH IIC 66, Y145F
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;277 K;PROTEIN WAS CRYSTALLIZED AT 4 DEGC FROM 100MM SODIUM ACETATE PH 4.5 AND 10-12% PEG3400., temperature 277K
|
Resolution 2.10 Å
|
|
1C4F
GREEN FLUORESCENT PROTEIN S65T AT PH 4.6
Deposited 1999-08-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:65 - 67 REPLACED BY CRO, S65T SUBSTITUTION, Q80R SUBSTITUTION
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;10-13% PEG 3400, 100MM SODIUM ACETATE AND 100 MM AMMONIUM ACETATE, pH 4.6, VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.25 Å
|
|
1CV7
Crystal structure of enhanced cyan-emission variant of GFP
Deposited 1999-08-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–228(228 aa)
|
Mutation:K26R,F64L,S65T,Y66W,N146I,M153T,V163A,N164H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;12% PEG-1550, 50mM calcium acetate and 100 mM acetaete buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 2.50 Å
|
|
1EMA
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA
Deposited 1996-08-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
3–239(237 aa)
|
Mutation:65 - 67 REPLACED BY CRO, Q80R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2;22-26% PEG 4000, 50 MM HEPES PH 8.0-8.4, 50 MM MGCL2, 10 MM 2-MERCAPTOETHANOL, 5-7 MG PROTEIN, pH 8.2
|
Resolution 1.90 Å
|
|
1EMB
GREEN FLUORESCENT PROTEIN (GFP) FROM AEQUOREA VICTORIA, GLN 80 REPLACED WITH ARG
Deposited 1997-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q80R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 3.8;PROTEIN WAS CRYSTALLIZED FROM 50 MM KH2PO4 AND 20 % (W/V) PEG 8000, PH 3.8.
|
Resolution 2.13 Å
R-free 0.250
|
|
1EMC
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–237(236 aa)
Chain B
2–237(236 aa)
Chain C
2–237(236 aa)
Chain D
2–237(236 aa)
|
Mutation:INS(A1[B]), F64L, I167T, K238N
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:INS(A1[B]), F64L, I167T, K238N
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:INS(A1[B]), F64L, I167T, K238N
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:INS(A1[B]), F64L, I167T, K238N
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 14 MG/ML IN 20 MM KPO4, PH 7.0 WELL SOLUTION: 60% MPD, 50MM TRISCL, PH 8.0 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.30 Å
R-free 0.288
|
|
1EME
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–237(236 aa)
|
Mutation:INS(A1[B]), F64L, I167T, K238N
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 13 MG/ML IN 20 MM TRIS/HCL WELL SOLUTION: 1.8 M AS, 100 MM TRIS/HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.50 Å
R-free 0.285
|
|
1EMF
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Mutation:INS(A1[B]), F64L, Y66H, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 21 MG/ML IN 20 MM TRIS/HCL WELL SOLUTION: 2.1 M AS, 100 MM TRIS/HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.40 Å
R-free 0.262
|
|
1EMG
GREEN FLUORESCENT PROTEIN (65-67 REPLACED BY CRO, S65T SUBSTITUTION, Q80R)
Deposited 1998-11-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–229(228 aa)
|
Mutation:65 - 67 REPLACED BY CRO, S65T SUBSTITUTION, Q80R SUBSTITUTION
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;CRYSTALLIZATION CONDITIONS:
22-26% PEG 4000, 50 MM HEPES PH 8.0, 50 MM MGCL2,
12 MG PROTEIN
|
Resolution 2.00 Å
|
|
1EMK
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–237(236 aa)
|
Mutation:INS(A1[B]), F64L, S65C, I167T, K238N
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 17 MG/ML IN 20 MM TRISCL WELL SOLUTION: 1.95 M AS, 100MM TRISCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.10 Å
R-free 0.282
|
|
1EML
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–237(236 aa)
|
Mutation:INS(A1[B]), F64L, K238N
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 17 MG/ML IN 20 MM TRISCL WELL SOLUTION: 2.0 M AS, 100 MM TRISCL, PH 8.5 (HAMPTON SCREEN I, SOLUTION 4) PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.30 Å
R-free 0.285
|
|
1EMM
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Mutation:INS(A1[B]), F64L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 13 MG/ML IN 20 MM K-PO4, PH 7.0 WELL SOLUTION: 1.95 M AS, 100 MM TRIS/HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.30 Å
R-free 0.275
|
|
1F09
CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q WITH TWO BOUND IODIDES
Deposited 2000-05-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65G, V68L, S72A, Q80R, T203Y, H148Q
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IOD IODIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;277 K;PEG 1550, sodium acetate, magnesium chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.14 Å
|
|
1F0B
CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q
Deposited 2000-05-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65G, V68L, S72A, Q80R, T203Y, H148Q
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;277 K;PEG 1550, sodium acetate, magnesium chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.10 Å
|
|
1GFL
STRUCTURE OF GREEN FLUORESCENT PROTEIN
Deposited 1996-08-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–239(238 aa)
|
Mutation:Q80R
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;FREE TEXT GOES HERE., pH 7.0
|
Resolution 1.90 Å
R-free 0.262
|
|
1GFL
STRUCTURE OF GREEN FLUORESCENT PROTEIN
Deposited 1996-08-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–239(238 aa)
|
Mutation:Q80R
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;FREE TEXT GOES HERE., pH 7.0
|
Resolution 1.90 Å
R-free 0.262
|
|
1H6R
The oxidized state of a redox sensitive variant of green fluorescent protein
Deposited 2001-06-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;100 MM HEPES, PH 8.0, 100 MM MGCL2, AND 14% PEG4000
|
Resolution 1.50 Å
R-free 0.212
|
|
1H6R
The oxidized state of a redox sensitive variant of green fluorescent protein
Deposited 2001-06-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;100 MM HEPES, PH 8.0, 100 MM MGCL2, AND 14% PEG4000
|
Resolution 1.50 Å
R-free 0.212
|
|
1H6R
The oxidized state of a redox sensitive variant of green fluorescent protein
Deposited 2001-06-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;100 MM HEPES, PH 8.0, 100 MM MGCL2, AND 14% PEG4000
|
Resolution 1.50 Å
R-free 0.212
|
|
1HCJ
Photoproduct of the wild-type Aequorea victoria Green Fluorescent Protein
Deposited 2001-05-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain D
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8;277 K;CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.80 Å
R-free 0.267
|
|
1HCJ
Photoproduct of the wild-type Aequorea victoria Green Fluorescent Protein
Deposited 2001-05-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8;277 K;CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.80 Å
R-free 0.267
|
|
1HUY
CRYSTAL STRUCTURE OF CITRINE, AN IMPROVED YELLOW VARIANT OF GREEN FLUORESCENT PROTEIN
Deposited 2001-01-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;50 mM NH4OAc, 50 mM NaOAc, 8% PEG 3400, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.20 Å
R-free 0.208
|
|
1JBY
CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT LOW PH
Deposited 2001-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65T,Q80R,H148G,T203C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;295 K;PEG 1550, citrate, ammonium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.80 Å
|
|
1JBZ
CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT HIGH PH
Deposited 2001-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65T,Q80R,H148G,T203C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9;295 K;PEG 4000, Tris, Magnesium chloride, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.50 Å
|
|
1JC0
CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A REDUCED FORM
Deposited 2001-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:C48S,F64L,S65T,Q80R,S147C,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;295 K;PEG 4000, Lithium Sulfate, Tris, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.00 Å
|
|
1JC0
CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A REDUCED FORM
Deposited 2001-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:C48S,F64L,S65T,Q80R,S147C,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;295 K;PEG 4000, Lithium Sulfate, Tris, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.00 Å
|
|
1JC0
CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A REDUCED FORM
Deposited 2001-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:C48S,F64L,S65T,Q80R,S147C,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;295 K;PEG 4000, Lithium Sulfate, Tris, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.00 Å
|
|
1JC1
CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A OXIDIZED FORM
Deposited 2001-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:C48S,F64L,S65T,Q80R,S147C,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;295 K;PEG 4000, Lithium Sulfate, Tris, Copper (II) Chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.90 Å
|
|
1JC1
CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A OXIDIZED FORM
Deposited 2001-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:C48S,F64L,S65T,Q80R,S147C,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;295 K;PEG 4000, Lithium Sulfate, Tris, Copper (II) Chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.90 Å
|
|
1JC1
CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A OXIDIZED FORM
Deposited 2001-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:C48S,F64L,S65T,Q80R,S147C,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;295 K;PEG 4000, Lithium Sulfate, Tris, Copper (II) Chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.90 Å
|
|
1KP5
Cyclic Green Fluorescent Protein
Deposited 2001-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;285 K;ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å
R-free 0.256
|
|
1KP5
Cyclic Green Fluorescent Protein
Deposited 2001-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;285 K;ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å
R-free 0.256
|
|
1KP5
Cyclic Green Fluorescent Protein
Deposited 2001-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 16
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;285 K;ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å
R-free 0.256
|
|
1KP5
Cyclic Green Fluorescent Protein
Deposited 2001-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 16
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;285 K;ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å
R-free 0.256
|
|
1KP5
Cyclic Green Fluorescent Protein
Deposited 2001-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;285 K;ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å
R-free 0.256
|
|
1KP5
Cyclic Green Fluorescent Protein
Deposited 2001-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;285 K;ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å
R-free 0.256
|
|
1KP5
Cyclic Green Fluorescent Protein
Deposited 2001-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Mutation:M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;285 K;ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å
R-free 0.256
|
|
1MYW
CRYSTAL STRUCTURE OF A YELLOW FLUORESCENT PROTEIN WITH IMPROVED MATURATION AND REDUCED ENVIRONMENTAL SENSITIVITY
Deposited 2002-10-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
Fragment:residues 2-230
|
Mutation:F46L, F64L, S65G, V68L, S72A, M153T, V163A, S175G, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.4;298 K;Tris, ammonium sulfate, PEG400, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.20 Å
R-free 0.248
|
|
1Q4A
S65T Q80R Green Fluorescent Protein (GFP) pH 8.5
Deposited 2003-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q80R, S65T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;298 K;PEG 4000, MgCl2, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.45 Å
R-free 0.201
|
|
1Q4B
S65T Q80R Green Fluorescent Protein (GFP) pH 5.5
Deposited 2003-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q80R, S65T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;PEG 4000, MgCl2, BME, pH 5.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.48 Å
R-free 0.231
|
|
1Q4C
S65T Q80R T203C Green Fluorescent Protein (GFP) pH 8.5
Deposited 2003-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q80R, S65T, T203C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;298 K;PEG 4000, MgCl2, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.55 Å
R-free 0.214
|
|
1Q4D
S65T Q80R T203C Green Fluorescent Protein (GFP) pH 5.5
Deposited 2003-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q80R, S65T, T203C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;PEG 4000, MgCl2, BME, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.58 Å
R-free 0.233
|
|
1Q4E
S65T Q80R Y145C Green Fluorescent Protein (GFP) pH 8.5
Deposited 2003-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q80R, S65T, Y145C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;298 K;PEG 4000, MgCl2, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.38 Å
R-free 0.202
|
|
1Q73
S65T Q80R Y145C T203C Green Fluorescent Protein (GFP) pH 8.5
Deposited 2003-08-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q80R, S65T, Y145C, T203C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;298 K;PEG 4000, MgCl2, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.60 Å
R-free 0.210
|
|
1QXT
Crystal structure of precyclized intermediate for the green fluorescent protein R96A variant (A)
Deposited 2003-09-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–229(229 aa)
Fragment:residues 1-229
|
Mutation:R96A F99S M153T V163A F64L S65T
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;PEG 4000, MAGNESIUM CHLORIDE, HEPES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.257
|
|
1QY3
Crystal structure of precyclized intermediate for the green fluorescent protein R96A variant (B)
Deposited 2003-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–229(229 aa)
Fragment:residues 1-229
|
Mutation:R96A F99S M153T V163A F64L S65T
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;PEG 4000, Magnesium Chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.242
|
|
1QYF
Crystal structure of matured green fluorescent protein R96A variant
Deposited 2003-09-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–229(229 aa)
Fragment:residues 1-229
|
Mutation:R96A, F99S, M153T, V163A, F64L, S65CRO, Y66CRO, G67CRO
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;PEG 4000, Magnesium Chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å
R-free 0.214
|
|
1QYO
Anaerobic precylization intermediate crystal structure for S65G Y66G GFP variant
Deposited 2003-09-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F99S, M153T, V163A, F64L, S65G, Y66G
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;PEG 4000, Magnesium Chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å
R-free 0.222
|
|
1RM9
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
Deposited 2003-11-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
371–608(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;293 K;22% PEG 10000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.90 Å
R-free 0.268
|
|
1RMM
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
Deposited 2003-11-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
290–517(228 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;293 K;14% PEG 1000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.233
|
|
1RMO
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
Deposited 2003-11-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
314–551(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;293 K;14% PEG 1000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.80 Å
R-free 0.221
|
|
1RMP
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
Deposited 2003-11-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
290–517(228 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7;293 K;14% PEG 1000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 3.00 Å
R-free 0.233
|
|
1RRX
Crystallographic Evidence for Isomeric Chromophores in 3-Fluorotyrosyl-Green Fluorescent Protein
Deposited 2003-12-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
290–517(228 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;PEG 4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å
R-free 0.272
|
|
1W7S
Wild-Type Aequorea victoria Green Fluorescent Protein
Deposited 2004-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
Chain D
1–238(238 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8;277 K;CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.85 Å
R-free 0.216
|
|
1W7T
Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein at 100 K
Deposited 2004-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
Chain D
1–238(238 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8;277 K;CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.85 Å
R-free 0.220
|
|
1W7U
Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein after structural annealing at 170K
Deposited 2004-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
Chain D
1–238(238 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8;277 K;CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.85 Å
R-free 0.226
|
|
1YFP
STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP
Deposited 1998-08-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
3–229(227 aa)
|
Mutation:S65G, V68L, S72A, Q80R, H148G, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;288 K;YFP WAS CONCENTRATED TO 10 MG/ML IN 50 MM HEPES PH 7.5. ROD-SHAPED CRYSTALS WITH APPROXIMATE DIMENSIONS OF 0.8 X 0.12 X 0.03 MM WERE GROWN IN HANGING DROPS CONTAINING 5 MICROLITERS PROTEIN AND 5 MICROLITERS MOTHER LIQUOR AT 15 DEGREES C AFTER 2 WEEKS. THE MOTHER LIQUOR CONTAINED 2.2 M SODIUM/POTASSIUM PHOSPHATE PH 6.9., vapor diffusion - hanging drop, temperature 288K
|
Resolution 2.50 Å
|
|
1YFP
STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP
Deposited 1998-08-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
3–229(227 aa)
|
Mutation:S65G, V68L, S72A, Q80R, H148G, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;288 K;YFP WAS CONCENTRATED TO 10 MG/ML IN 50 MM HEPES PH 7.5. ROD-SHAPED CRYSTALS WITH APPROXIMATE DIMENSIONS OF 0.8 X 0.12 X 0.03 MM WERE GROWN IN HANGING DROPS CONTAINING 5 MICROLITERS PROTEIN AND 5 MICROLITERS MOTHER LIQUOR AT 15 DEGREES C AFTER 2 WEEKS. THE MOTHER LIQUOR CONTAINED 2.2 M SODIUM/POTASSIUM PHOSPHATE PH 6.9., vapor diffusion - hanging drop, temperature 288K
|
Resolution 2.50 Å
|
|
1YHG
Uncyclized precursor structure of S65G Y66S V68G GFP variant
Deposited 2005-01-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65G, Y66S, V68G, F99S, M153T, V163A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;PEG 4000, 50 mM MgCl2, 50 mM Hepes 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.50 Å
R-free 0.280
|
|
1YHG
Uncyclized precursor structure of S65G Y66S V68G GFP variant
Deposited 2005-01-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:F64L, S65G, Y66S, V68G, F99S, M153T, V163A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;PEG 4000, 50 mM MgCl2, 50 mM Hepes 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.50 Å
R-free 0.280
|
|
1YHH
Uncyclized precursor structure of S65A Y66S G67A GFP variant
Deposited 2005-01-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65A, Y66S, G67A, F99S, M153T, V163A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;PEG4000, 50 mM MgCl2, 50 mM Hepes , pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å
R-free 0.228
|
|
1YHI
Uncyclized precursor structure of S65A Y66S R96A GFP variant
Deposited 2005-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65A, Y66S, R96A, F99S, M153T, V163A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;PEG4000, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.257
|
|
2AH8
roGFP1-R7. Cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form.
Deposited 2005-07-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
Fragment:GFP
|
Mutation:Q80R,C48S,S147C,Q204C,S202K,F223R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IMD IMIDAZOLE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;295 K;sodium citrate, imidazole, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.24 Å
R-free 0.280
|
|
2AH8
roGFP1-R7. Cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form.
Deposited 2005-07-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
Fragment:GFP
|
Mutation:Q80R,C48S,S147C,Q204C,S202K,F223R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;295 K;sodium citrate, imidazole, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.24 Å
R-free 0.280
|
|
2AH8
roGFP1-R7. Cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form.
Deposited 2005-07-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Fragment:GFP
Chain B
1–238(238 aa)
Fragment:GFP
|
Mutation:Q80R,C48S,S147C,Q204C,S202K,F223R
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:Q80R,C48S,S147C,Q204C,S202K,F223R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IMD IMIDAZOLE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.6;295 K;sodium citrate, imidazole, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.24 Å
R-free 0.280
|
|
2AHA
Crystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the reduced form, roGFP1-R8.
Deposited 2005-07-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
Fragment:GFP
|
Mutation:Q80R,C48S,S147C,Q204C,K41D,F223R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;295 K;sodium phosphate/citrate, ammonium sulfate, DTT, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.98 Å
R-free 0.275
|
|
2AHA
Crystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the reduced form, roGFP1-R8.
Deposited 2005-07-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
Fragment:GFP
|
Mutation:Q80R,C48S,S147C,Q204C,K41D,F223R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;295 K;sodium phosphate/citrate, ammonium sulfate, DTT, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.98 Å
R-free 0.275
|
|
2AWJ
GFP R96M pre-cyclized intermediate in chromophore formation
Deposited 2005-09-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–229(228 aa)
Fragment:residues 1-229
|
Mutation:F64L, S65T, R96M, F99S, M153T, V163A
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;295 K;PEG4000, magnesium chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K, pH 8.00
|
Resolution 1.60 Å
R-free 0.241
|
|
2AWK
GFP R96M mature chromophore
Deposited 2005-09-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–229(229 aa)
Fragment:residues 1-229
|
Mutation:F64L, S65T, R96M, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;295 K;PEG4000, Magnesium chloride, HEPES, pH 8.00, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.15 Å
R-free 0.188
|
|
2AWL
Mature R96K GFP mutant
Deposited 2005-09-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–229(229 aa)
Fragment:RESIDUES 1-229
|
Mutation:F64L, S65T, R96K, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;295 K;PEG4000, Magnesium chloride, HEPES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.85 Å
R-free 0.270
|
|
2AWM
GFP R96A chromophore maturation recovery mutant R96A Q183R
Deposited 2005-09-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–229(229 aa)
|
Mutation:F64L, S65T, R96A, F99S, M153T, V163A, Q183R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;295 K;PEG4000, Magnesium chloride, HEPES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.70 Å
R-free 0.223
|
|
2B3P
Crystal structure of a superfolder green fluorescent protein
Deposited 2005-09-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S30R, Y39N, F64L, S65T, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CD CADMIUM ION × 9
ACY ACETIC ACID × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;298 K;Hepes-NaOH, sodium acetate, cadmium sulfate, pH 7.5, VAPOR DIFFUSION, temperature 298K
|
Resolution 1.40 Å
R-free 0.218
|
|
2B3Q
Crystal structure of a well-folded variant of green fluorescent protein
Deposited 2005-09-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
Chain D
1–238(238 aa)
|
Mutation:F64L, S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F64L, S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;PEG 3000, Ca(OAc)2, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å
R-free 0.259
|
|
2B3Q
Crystal structure of a well-folded variant of green fluorescent protein
Deposited 2005-09-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
|
Mutation:F64L, S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F64L, S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;PEG 3000, Ca(OAc)2, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å
R-free 0.259
|
|
2DUE
crystal structure of a green fluorescent protein variant S65T/H148D at pH 10
Deposited 2006-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65T, H148D, Q80R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 10;298 K;100mM MgCl2, 100mM CHES pH 10, 26% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.24 Å
R-free 0.204
|
|
2DUF
crystal structure of a green fluorescent protein variant S65T/H148D at pH 5.6
Deposited 2006-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65T, H148D, Q80R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;298 K;100mM MgCl2, 100mM NaOAc pH 5.6, 26% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å
R-free 0.244
|
|
2DUG
crystal structure of a green fluorescent protein S65T/H148N at pH 5
Deposited 2006-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65T, H148N, Q80R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;50mM Li2SO4, 100mM Acetate pH 9.5, 30% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.40 Å
R-free 0.241
|
|
2DUH
crystal structure of a green fluorescent protein variant S65T/H148N at pH 9.5
Deposited 2006-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65T, H148N, Q80R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9.5;298 K;50mM Li2SO4, 100mM TRIS pH 9.5, 30% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å
R-free 0.209
|
|
2DUI
crystal structure of a green fluorescent protein variant H148D at pH 9
Deposited 2006-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:H148D, Q80R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9;298 K;100mM MgCl2, 100mM Tris pH 8.5, 30% PEG 1550, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.36 Å
R-free 0.216
|
|
2EMD
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Mutation:INS(A1[B]), F64L, Y66H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 21 MG/ML IN 20 MM TRIS/HCL WELL SOLUTION: 2.1 M AS, 100 MM TRIS/HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.00 Å
R-free 0.236
|
|
2EMN
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Mutation:INS(A1[B]), F64L, Y66H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 21 MG/ML IN 20 MM TRIS/HCL, PH 8.0. WELL SOLUTION: 2.1 M AS, 100 MM TRIS/HCL, PH 8.5. PROTEIN:WELL 1:1., vapor diffusion - hanging drop
|
Resolution 2.30 Å
R-free 0.299
|
|
2EMO
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Deposited 1997-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Mutation:INS(A1[B]), F64L, Y66H, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 21 MG/ML IN 20 MM TRIS/HCL, PH 8.0 WELL SOLUTION: 1.95 M AS, 100 MM TRIS HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.60 Å
R-free 0.343
|
|
2FWQ
Reduced enolate chromophore intermediate for Y66H GFP variant
Deposited 2006-02-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, Y66H, F99S, H148G, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;298 K;50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 8.00
|
Resolution 1.40 Å
R-free 0.198
|
|
2FZU
Reduced enolate chromophore intermediate for GFP variant
Deposited 2006-02-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;50 mM MgCl2, 50 mM Hepes, 20% PEG 4K, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.25 Å
R-free 0.199
|
|
2G16
Structure of S65A Y66S GFP variant after backbone fragmentation
Deposited 2006-02-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–64(63 aa)
Fragment:residues 2-64
Chain B
65–238(174 aa)
Fragment:residues 65-238
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S65A, Y66S, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.241
|
|
2G2S
Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis
Deposited 2006-02-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–65(64 aa)
Chain B
66–238(173 aa)
|
Mutation:F64L, S65G
Mutation:Y66S, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;298 K;50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 8.00
|
Resolution 1.20 Å
R-free 0.174
|
|
2G3D
Structure of S65G Y66A GFP variant after spontaneous peptide hydrolysis
Deposited 2006-02-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–65(64 aa)
Chain B
66–238(173 aa)
|
Mutation:F64L, S65G
Mutation:Y66A, F99S, M153T, V163A
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.35 Å
R-free 0.215
|
|
2G5Z
Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis and decarboxylation
Deposited 2006-02-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–65(64 aa)
Chain B
66–238(173 aa)
|
Mutation:S65G
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:Y66S, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 8.0
|
Resolution 1.80 Å
R-free 0.232
|
|
2G6E
Structure of cyclized F64L S65A Y66S GFP variant
Deposited 2006-02-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65A, Y66S, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.30 Å
R-free 0.187
|
|
2H6V
Spectroscopic and structural study of the heterotropic linkage between halide and proton ion binding to GFP proteins- E2(GFP) APO FORM
Deposited 2006-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5;14% (w/v) PEG3350, 100 mM NH4 acetate pH 5.0, 0.2 M NH4F, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 100K
|
Resolution 1.47 Å
R-free 0.187
|
|
2H9W
Green fluorescent protein ground states: the influence of a second protonation site near the chromophore
Deposited 2006-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–237(236 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9;298 K;AS, Tris, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.82 Å
R-free 0.186
|
|
2HCG
Structure of S65T Y66F GFP variant after cyclization, carbon-carbon bond cleavage, and oxygen incorporation reactions
Deposited 2006-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, Y66F, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.35 Å
R-free 0.188
|
|
2HFC
Structure of S65T Y66F R96A GFP variant in precursor state
Deposited 2006-06-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, Y66F, R96A, F99S, M153T, V163A
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å
R-free 0.203
|
|
2HGD
Structure of S65A Y66F GFP variant with an oxidized chromophore
Deposited 2006-06-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65A, Y66F, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.60 Å
R-free 0.239
|
|
2HGY
Structure of S65A Y66F E222A GFP variant after cyclization and carbon-carbon bond cleavage
Deposited 2006-06-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65A, Y66F, F99S, M153T, V163A, E222A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.05 Å
R-free 0.260
|
|
2HJO
Crystal structure of V224H design intermediate for GFP metal ion reporter
Deposited 2006-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L S65T V224H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.25 Å
R-free 0.165
|
|
2HQZ
Crystal structure of L42H design intermediate for GFP metal ion reporter
Deposited 2006-07-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L, S65T, L42H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
EDO 1,2-ETHANEDIOL × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å
R-free 0.179
|
|
2HRS
Crystal structure of L42H V224H design intermediate for GFP metal ion reporter
Deposited 2006-07-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L S65T F99S M153T V163A L42H V224H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.40 Å
R-free 0.192
|
|
2JAD
Yellow fluorescent protein - glutaredoxin fusion protein
Deposited 2006-11-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 10;50MM BICARBONATE PH 10 1.5-1.75M MGSO4
|
Resolution 2.70 Å
R-free 0.247
|
|
2O24
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-Cl Complex
Deposited 2006-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;14% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4CL, PH 5.0, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.45 Å
R-free 0.192
|
|
2O29
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-BR Complex
Deposited 2006-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
BR BROMIDE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;14% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4Br, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 100K
|
Resolution 1.80 Å
R-free 0.208
|
|
2O2B
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex
Deposited 2006-11-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IOD IODIDE ION × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;14% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4I, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 100K
|
Resolution 1.94 Å
R-free 0.234
|
|
2OKW
A non-invasive GFP-based biosensor for mercury ions
Deposited 2007-01-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65T, R80Q, S205C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.268
|
|
2OKW
A non-invasive GFP-based biosensor for mercury ions
Deposited 2007-01-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:S65T, R80Q, S205C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.268
|
|
2OKW
A non-invasive GFP-based biosensor for mercury ions
Deposited 2007-01-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:S65T, R80Q, S205C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.268
|
|
2OKW
A non-invasive GFP-based biosensor for mercury ions
Deposited 2007-01-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:S65T, R80Q, S205C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.268
|
|
2OKW
A non-invasive GFP-based biosensor for mercury ions
Deposited 2007-01-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
1–238(238 aa)
|
Mutation:S65T, R80Q, S205C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.268
|
|
2OKW
A non-invasive GFP-based biosensor for mercury ions
Deposited 2007-01-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
1–238(238 aa)
|
Mutation:S65T, R80Q, S205C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.268
|
|
2OKY
A non-invasive GFP-based biosensor for mercury ions
Deposited 2007-01-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65T, R80Q, S205C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;32% PEG 8000, 100mM PIPES, 200mM ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.40 Å
R-free 0.302
|
|
2OKY
A non-invasive GFP-based biosensor for mercury ions
Deposited 2007-01-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:S65T, R80Q, S205C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;32% PEG 8000, 100mM PIPES, 200mM ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.40 Å
R-free 0.302
|
|
2Q57
X-ray structure of Cerulean GFP: A tryptophan-based chromophore useful for fluorescence lifetime imaging
Deposited 2007-05-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L, S72A, Q80R, Y145A, N146I, H148D, M153T, V163A, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;100mM sodium acetate, 19% PEG 4000, 1mM EDTA, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.00 Å
R-free 0.262
|
|
2QLE
GFP/S205V mutant
Deposited 2007-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q80R, S205V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IMD IMIDAZOLE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;298 K;100mM Imidazol pH 8.0, 1.1M Na Citrate at room temperature for 6-7 months., temperature 298K
|
Resolution 1.59 Å
R-free 0.256
|
|
2QLE
GFP/S205V mutant
Deposited 2007-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:Q80R, S205V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IMD IMIDAZOLE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;298 K;100mM Imidazol pH 8.0, 1.1M Na Citrate at room temperature for 6-7 months., temperature 298K
|
Resolution 1.59 Å
R-free 0.256
|
|
2QLE
GFP/S205V mutant
Deposited 2007-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:Q80R, S205V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IMD IMIDAZOLE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;298 K;100mM Imidazol pH 8.0, 1.1M Na Citrate at room temperature for 6-7 months., temperature 298K
|
Resolution 1.59 Å
R-free 0.256
|
|
2QLE
GFP/S205V mutant
Deposited 2007-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:Q80R, S205V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IMD IMIDAZOLE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;298 K;100mM Imidazol pH 8.0, 1.1M Na Citrate at room temperature for 6-7 months., temperature 298K
|
Resolution 1.59 Å
R-free 0.256
|
|
2QRF
Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant
Deposited 2007-07-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–230(230 aa)
|
Mutation:F64L, F99S, M153T, V163A, Q183E
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;8-12% Peg 4000, 50 mM Magnesium Chloride, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å
R-free 0.229
|
|
2QT2
Cyclized-Dehydrated Intermediate of GFP Variant Q183E in Chromophore Maturation
Deposited 2007-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L, F99S, M153T, V163A, Q183E
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;Peg4000, Magnesium chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.31 Å
R-free 0.189
|
|
2QU1
Crystal Structure of a Cyclized GFP Variant
Deposited 2007-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;Protein solution (4.95 mg/ml Protein, 0.050 M Sodium chloride, 0.0003 M TCEP, 0.005 M Bis-Tris pH 7.0) mixed in a 1:1 ratio with the Well solution (0.080 M Calcium chloride, 15% PEG 4000, 0.1 M HEPPS pH 8.5) and cryoprotected with well solution supplemented with 20% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.70 Å
R-free 0.220
|
|
2QZ0
Mature Q183E variant of Green Fluorescent Protein Chromophore
Deposited 2007-08-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–229(228 aa)
|
Mutation:F64L, F99S, M153T, V163A, Q183E
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;Peg4000, Magnesium chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å
R-free 0.170
|
|
2WSN
Structure of Enhanced Cyan Fluorescent Protein at physiological pH
Deposited 2009-09-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
Fragment:RESIDUES 2-238
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;19.5% PEG8000, 4% GLYCEROL, 1M HEPES PH 7.5
|
Resolution 1.37 Å
R-free 0.185
|
|
2WSO
Structure of Cerulean Fluorescent Protein at physiological pH
Deposited 2009-09-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
Fragment:RESIDUES 2-238
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;15% PEG 8000, 0.1M MGCL2, 0.1 M HEPES PH 7.0
|
Resolution 1.15 Å
R-free 0.177
|
|
2WUR
Atomic resolution structure of GFP measured on a rotating anode
Deposited 2009-10-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IPA ISOPROPYL ALCOHOL × 1
EOH ETHANOL × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;HANGING DROP VAPOR DIFFUSION: 2 UL PROTEIN (10 MG/ML IN 20 MM TRIS, PH 8.0) PLUS 2 UL RESERVOIR (40% ETHANOL, 10 % DIOXANE)
|
Resolution 0.90 Å
R-free 0.174
|
|
2Y0G
X-ray structure of Enhanced Green Fluorescent Protein (EGFP)
Deposited 2010-12-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2;50 MM HEPES PH 8.2, 24% PEG 4000, 50 MM MGCL2, 10 MM BETA-MERCAPTOEPTHANOL
|
Resolution 1.50 Å
R-free 0.188
|
|
2YDZ
X-ray structure of the cyan fluorescent protein SCFP3A (K206A mutant)
Deposited 2011-03-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.75;16 MG/ML PROTEIN, 13% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 6.75
|
Resolution 1.59 Å
R-free 0.193
|
|
2YE0
X-ray structure of the cyan fluorescent protein mTurquoise (K206A mutant)
Deposited 2011-03-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.75;16 MG/ML PROTEIN, 14% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 6.75
|
Resolution 1.47 Å
R-free 0.185
|
|
2YE1
X-ray structure of the cyan fluorescent proteinmTurquoise-GL (K206A mutant)
Deposited 2011-03-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;35 MG/ML PROTEIN, 14% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 7.00
|
Resolution 1.63 Å
R-free 0.194
|
|
3CB9
Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
Deposited 2008-02-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S,F64L,F99S,S147CR,H148S,M153T,V163A,I167T,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;298 K;0.1M tris, 22% PEG 1550, 0.02M magnesium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.31 Å
R-free 0.169
|
|
3CBE
Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
Deposited 2008-02-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S,F64L,F99S,S147CR,H148S,M153T,V163A,I167T,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;298 K;0.1M tris, 22% PEG 1550, 0.02M magnesium chloride. After crystal formation TCEP added to 20mM., pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.49 Å
R-free 0.188
|
|
3CD1
Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
Deposited 2008-02-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S,F64L,F99S,S147CR,H148S,M153T,V163A,I167T,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;0.1M tris, 24% PEG 1550, 0.04M sodium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.31 Å
R-free 0.184
|
|
3CD9
Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
Deposited 2008-02-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S,F64L,F99S,S147CR,H148S,M153T,V163A,I167T,Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;0.1M tris, 24% PEG 1550, 0.04M sodium acetate. TCEP added to 20mM after crystal formation., pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å
R-free 0.193
|
|
3DPW
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.59 Å
R-free 0.284
|
|
3DPX
Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.50 Å
R-free 0.240
|
|
3DPZ
Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 3: Structure 25 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.70 Å
R-free 0.294
|
|
3DQ1
Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 2: Structure 24 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.70 Å
R-free 0.296
|
|
3DQ2
Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.60 Å
R-free 0.282
|
|
3DQ3
Structure of the Yellow Fluorescent Protein Citrine Frozen at 2500 Atmospheres: Structure 22 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.70 Å
R-free 0.253
|
|
3DQ4
Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 2: Structure 20 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.47 Å
R-free 0.240
|
|
3DQ5
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.50 Å
R-free 0.255
|
|
3DQ6
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 2: Structure 18 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.60 Å
R-free 0.255
|
|
3DQ7
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 1: Structure 17 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.23 Å
R-free 0.250
|
|
3DQ8
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 2: Structure 16 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.51 Å
R-free 0.283
|
|
3DQ9
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 1: Structure 15 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.40 Å
R-free 0.271
|
|
3DQA
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 4: Structure 14 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.44 Å
R-free 0.245
|
|
3DQC
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 3: Structure 13 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.49 Å
R-free 0.279
|
|
3DQD
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 2: Structure 12 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.40 Å
R-free 0.280
|
|
3DQE
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 1: Structure 11 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.43 Å
R-free 0.263
|
|
3DQF
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 6: Structure 10 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.46 Å
R-free 0.244
|
|
3DQH
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 5: Structure 9 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.45 Å
R-free 0.237
|
|
3DQI
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.42 Å
R-free 0.266
|
|
3DQJ
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 3: Structure 7 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.51 Å
R-free 0.298
|
|
3DQK
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 2: Structure 6 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.40 Å
R-free 0.265
|
|
3DQL
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 1: Structure 5 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.47 Å
R-free 0.271
|
|
3DQM
Structure of the Yellow Fluorescent Protein Citrine Frozen at 750 Atmospheres: Structure 4 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.44 Å
R-free 0.260
|
|
3DQN
Structure of the Yellow Fluorescent Protein Citrine Frozen at 500 Atmospheres: Structure 3 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.44 Å
R-free 0.257
|
|
3DQO
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 2: Structure 2 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.50 Å
R-free 0.259
|
|
3DQU
Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 1: Structure 20 in a Series of 26 High Pressure Structures
Deposited 2008-07-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, Q69M, S72A, T203Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.42 Å
R-free 0.257
|
|
3EK4
Calcium-saturated GCaMP2 Monomer
Deposited 2008-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;0.1 M Magnesium formate dihydrate, 15% w/v Polyethylene glycol 3,350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.65 Å
R-free 0.280
|
|
3EK7
Calcium-saturated GCaMP2 dimer
Deposited 2008-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;298 K;0.2 M lithium sulfate monohydrate, 0.1 M Tris-HCl pH 8.5, 30%(w/v) polyethylene glycol 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.85 Å
R-free 0.241
|
|
3EK8
Calcium-saturated GCaMP2 T116V/G87R mutant monomer
Deposited 2008-09-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:T116V, G87R
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:T116V, G87R
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;0.1 M Magnesium formate dihydrate, 15% w/v Polyethylene glycol 3,350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å
R-free 0.266
|
|
3EKH
Calcium-saturated GCaMP2 T116V/K378W mutant monomer
Deposited 2008-09-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:T116V, K378W
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:T116V, K378W
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;0.1 M Magnesium formate dihydrate, 15% w/v Polyethylene glycol 3,350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å
R-free 0.224
|
|
3EKJ
Calcium-free GCaMP2 (calcium binding deficient mutant)
Deposited 2008-09-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:T329G, E334Q, D359G, E370Q, D396G, E407Q, D432G, E443Q
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:T329G, E334Q, D359G, E370Q, D396G, E407Q, D432G, E443Q
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;0.2 M Lithium sulfate monohydrate, 0.1 M BIS-TRIS pH 5.5, 25% w/v Polyethylene glycol 3,350, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å
R-free 0.280
|
|
3EVP
crystal structure of circular-permutated EGFP
Deposited 2008-10-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.45 Å
R-free 0.174
|
|
3EVR
Crystal structure of Calcium bound monomeric GCAMP2
Deposited 2008-10-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Fragment:UNP P42212 residues 2-238, UNP P0DP29 residues 148-305
Chain A
2–144(143 aa)
Fragment:UNP P42212 residues 2-238, UNP P0DP29 residues 148-305
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
R-free 0.190
|
|
3EVU
Crystal structure of Calcium bound dimeric GCAMP2
Deposited 2008-10-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
147–238(92 aa)
Fragment:UNP P11799 residues 1731-1749, UNP P42212 residues 2-144/147-238, UNP P0DP29 residues 3-238
Chain A
2–144(143 aa)
Fragment:UNP P11799 residues 1731-1749, UNP P42212 residues 2-144/147-238, UNP P0DP29 residues 3-238
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.75 Å
R-free 0.197
|
|
3EVV
Crystal Structure of Calcium bound dimeric GCAMP2 (#2)
Deposited 2008-10-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.60 Å
R-free 0.270
|
|
3G9A
Green fluorescent protein bound to minimizer nanobody
Deposited 2009-02-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Mutation:S2G, Q80R, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.5;293 K;100mM Mes pH 6.5, 30% PEG 8000, 15% Glycerol, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.61 Å
R-free 0.194
|
|
3GEX
1.6 angstrom crystal structure of fluorescent protein Cypet
Deposited 2009-02-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:T10G, V12I, D20E, A88V, I168A, E173T, L195I
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;30% PEG 4000, 0.1M Tris-HCl pH 8.5, 0.2M Lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.60 Å
R-free 0.229
|
|
3GJ1
Non photoactivated state of PA-GFP
Deposited 2009-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–230(230 aa)
|
Mutation:Q80R, F99S, M153T, V163A, T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;1.7 M Ammonium sulfate, 0.1 M Tris-HCl, 0.2 M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å
R-free 0.252
|
|
3GJ1
Non photoactivated state of PA-GFP
Deposited 2009-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–230(230 aa)
|
Mutation:Q80R, F99S, M153T, V163A, T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;1.7 M Ammonium sulfate, 0.1 M Tris-HCl, 0.2 M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å
R-free 0.252
|
|
3GJ1
Non photoactivated state of PA-GFP
Deposited 2009-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–230(230 aa)
|
Mutation:Q80R, F99S, M153T, V163A, T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;1.7 M Ammonium sulfate, 0.1 M Tris-HCl, 0.2 M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å
R-free 0.252
|
|
3GJ1
Non photoactivated state of PA-GFP
Deposited 2009-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–230(230 aa)
|
Mutation:Q80R, F99S, M153T, V163A, T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;1.7 M Ammonium sulfate, 0.1 M Tris-HCl, 0.2 M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å
R-free 0.252
|
|
3GJ2
Photoactivated state of PA-GFP
Deposited 2009-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–230(230 aa)
|
Mutation:Q80R, F99S, M153T, V163A, T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;18% PEG 3550, 0.1 M Tris-HCl, 0.2 M Calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.248
|
|
3GJ2
Photoactivated state of PA-GFP
Deposited 2009-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–230(230 aa)
|
Mutation:Q80R, F99S, M153T, V163A, T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;18% PEG 3550, 0.1 M Tris-HCl, 0.2 M Calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.248
|
|
3GJ2
Photoactivated state of PA-GFP
Deposited 2009-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–230(230 aa)
|
Mutation:Q80R, F99S, M153T, V163A, T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;18% PEG 3550, 0.1 M Tris-HCl, 0.2 M Calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.248
|
|
3GJ2
Photoactivated state of PA-GFP
Deposited 2009-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–230(230 aa)
|
Mutation:Q80R, F99S, M153T, V163A, T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;18% PEG 3550, 0.1 M Tris-HCl, 0.2 M Calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å
R-free 0.248
|
|
3I19
1.4 Angstrom Crystal Structure of Fluorescent Protein Cypet
Deposited 2009-06-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:T9G, V11I, D19E, A87V, I167A, E172T, L194I
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;30% PEG 4000, 0.1M Tris-HCl pH 8.5, 0.2M Li2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.36 Å
R-free 0.197
|
|
3K1K
Green fluorescent protein bound to enhancer nanobody
Deposited 2009-09-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Mutation:S2G, Q80R, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;60% MPD, 100MM NAAC PH 4.6, 10MM CACL2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.15 Å
R-free 0.255
|
|
3K1K
Green fluorescent protein bound to enhancer nanobody
Deposited 2009-09-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–238(238 aa)
|
Mutation:S2G, Q80R, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;293 K;60% MPD, 100MM NAAC PH 4.6, 10MM CACL2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.15 Å
R-free 0.255
|
|
3LA1
High resolution crystal structure of CyPet mutant A167I
Deposited 2010-01-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:T9G, V11I, D19E, A87V, A167I, E172T, L194I
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;30% PEG 4000, 0.1M TRIS-HCL PH 8.5, 0.2M LI2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.29 Å
R-free 0.159
|
|
3O77
The structure of Ca2+ Sensor (Case-16)
Deposited 2010-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
147–238(92 aa)
Chain A
2–146(145 aa)
|
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 2
SO4 SULFATE ION × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;293 K;Reservoir: 50mM Imidazol, 1.9M Na2malonate pH 6.4; Protein stock solution: 50mM Tris HCl (pH 7.4), 150mM NaCl, 10mM dithiothreitol, protein 4.1mg/ml; Drop ratio reservoir/protein = 1/3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.35 Å
R-free 0.274
|
|
3O78
The structure of Ca2+ Sensor (Case-12)
Deposited 2010-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
147–238(92 aa)
Chain A
2–146(145 aa)
|
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;293 K;Reservoir: 100mM Tris HCL (pH 5.5), 100mM (NH4)2SO4, 21% PEG 3350; Protein stock: 7.6 mg/ml Protein, 50mM Tris HCl (pH 7.4), 150mM NaCl; Seed stock solution: 20mM CaCl2, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.60 Å
R-free 0.316
|
|
3O78
The structure of Ca2+ Sensor (Case-12)
Deposited 2010-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
147–238(92 aa)
Chain B
2–146(145 aa)
|
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;293 K;Reservoir: 100mM Tris HCL (pH 5.5), 100mM (NH4)2SO4, 21% PEG 3350; Protein stock: 7.6 mg/ml Protein, 50mM Tris HCl (pH 7.4), 150mM NaCl; Seed stock solution: 20mM CaCl2, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.60 Å
R-free 0.316
|
|
3O78
The structure of Ca2+ Sensor (Case-12)
Deposited 2010-07-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
147–238(92 aa)
Chain A
2–146(145 aa)
Chain B
147–238(92 aa)
Chain B
2–146(145 aa)
|
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:POINT MUTATIONS
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;293 K;Reservoir: 100mM Tris HCL (pH 5.5), 100mM (NH4)2SO4, 21% PEG 3350; Protein stock: 7.6 mg/ml Protein, 50mM Tris HCl (pH 7.4), 150mM NaCl; Seed stock solution: 20mM CaCl2, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.60 Å
R-free 0.316
|
|
3OGO
Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212
Deposited 2010-08-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IPA ISOPROPYL ALCOHOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.6;293 K;20% PEG 4000, 20% isopropanol, 0.1M trisodium citrate dihydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.80 Å
R-free 0.253
|
|
3OGO
Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212
Deposited 2010-08-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.6;293 K;20% PEG 4000, 20% isopropanol, 0.1M trisodium citrate dihydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.80 Å
R-free 0.253
|
|
3OGO
Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212
Deposited 2010-08-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.6;293 K;20% PEG 4000, 20% isopropanol, 0.1M trisodium citrate dihydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.80 Å
R-free 0.253
|
|
3OGO
Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212
Deposited 2010-08-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IPA ISOPROPYL ALCOHOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.6;293 K;20% PEG 4000, 20% isopropanol, 0.1M trisodium citrate dihydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.80 Å
R-free 0.253
|
|
3OSQ
Maltose-bound maltose sensor engineered by insertion of circularly permuted green fluorescent protein into E. coli maltose binding protein at position 175
Deposited 2010-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
147–238(92 aa)
Fragment:GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
Chain A
2–146(145 aa)
Fragment:GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;296 K;0.5 M Ammonium sulfate, 0.1M Sodium citrate tribasic dihydrate pH 5.6, 1.0 M Lithium sulfate monohydrate, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.90 Å
R-free 0.199
|
|
3OSR
Maltose-bound maltose sensor engineered by insertion of circularly permuted green fluorescent protein into E. coli maltose binding protein at position 311
Deposited 2010-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
147–238(92 aa)
Fragment:GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
Chain A
2–146(145 aa)
Fragment:GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.6;296 K;0.1 M Sodium acetate pH 4.6, 8% w/v polyethylene glycol 4000, VAPOR DIFFUSION, temperature 296K
|
Resolution 2.00 Å
R-free 0.226
|
|
3OSR
Maltose-bound maltose sensor engineered by insertion of circularly permuted green fluorescent protein into E. coli maltose binding protein at position 311
Deposited 2010-09-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
147–238(92 aa)
Fragment:GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
Chain B
2–146(145 aa)
Fragment:GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.6;296 K;0.1 M Sodium acetate pH 4.6, 8% w/v polyethylene glycol 4000, VAPOR DIFFUSION, temperature 296K
|
Resolution 2.00 Å
R-free 0.226
|
|
3P28
Structure of a Circular Permutant of Green Fluorescent Protein
Deposited 2010-10-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
50–229(180 aa)
Fragment:UNP P42212 residues 50-229, 2-49
Chain A
3–49(47 aa)
Fragment:UNP P42212 residues 50-229, 2-49
|
Mutation:Q80R, F99S, M153T, V163A, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:Q80R, F99S, M153T, V163A, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;279 K;0.07 M Na-acetate trihydrate pH 4.6, 5.6% PEG 4000, and 30 % Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 279K
|
Resolution 1.80 Å
R-free 0.237
|
|
3SG2
Crystal Structure of GCaMP2-T116V,D381Y
Deposited 2011-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Fragment:SEE REMARK 999
Chain A
2–144(143 aa)
Fragment:SEE REMARK 999
|
Mutation:T116V,D381Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:T116V,D381Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.2 M ammonium acetate, 0.1 M Tris, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.00 Å
R-free 0.207
|
|
3SG3
Crystal Structure of GCaMP3-D380Y
Deposited 2011-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Fragment:SEE REMARK 999
Chain A
2–144(143 aa)
Fragment:SEE REMARK 999
|
Mutation:D380Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D380Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.2 M sodium chloride, 0.1 M Tris, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.10 Å
R-free 0.199
|
|
3SG4
Crystal Structure of GCaMP3-D380Y, LP(linker 2)
Deposited 2011-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Fragment:SEE REMARK 999
Chain A
2–144(143 aa)
Fragment:SEE REMARK 999
|
Mutation:D380Y, LP(linker 2)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D380Y, LP(linker 2)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.2 M sodium chloride, 0.1 M Tris, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.40 Å
R-free 0.213
|
|
3SG5
Crystal Structure of Dimeric GCaMP3-D380Y, QP(linker 1), LP(linker 2)
Deposited 2011-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Fragment:SEE REMARK 999
Chain A
2–144(143 aa)
Fragment:SEE REMARK 999
|
Mutation:D380Y, QP(linker 1), LP(linker 2)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:D380Y, QP(linker 1), LP(linker 2)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
SO4 SULFATE ION × 8
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1 M Bis-Tris, pH 6.5, 2 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.226
|
|
3SG6
Crystal Structure of Dimeric GCaMP2-LIA(linker 1)
Deposited 2011-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Fragment:SEE REMARK 999
Chain A
2–144(143 aa)
Fragment:SEE REMARK 999
|
Mutation:LIA(linker 1)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:LIA(linker 1)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.2 M lithium sulfate, 0.1 M Tris, pH 8.5, 30% PEG4000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.70 Å
R-free 0.249
|
|
3SG7
Crystal Structure of GCaMP3-KF(linker 1)
Deposited 2011-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Fragment:SEE REMARK 999
Chain A
2–144(143 aa)
Fragment:SEE REMARK 999
|
Mutation:KF(linker 1)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:KF(linker 1)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;0.2 M ammonium sulfate, 0.1 M Tris, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.230
|
|
3SRY
Engineered high-affinity halide-binding protein derived from YFP: halide-free
Deposited 2011-07-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, Q183A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;17% PEG3000, 150 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.16 Å
R-free 0.157
|
|
3SS0
Engineered high-affinity halide-binding protein derived from YFP: fluoride complex
Deposited 2011-07-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, Q183A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;17% PEG3000, 100 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.49 Å
R-free 0.192
|
|
3SSH
Engineered high-affinity halide-binding protein derived from YFP: chloride complex
Deposited 2011-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, Q183A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;17% PEG3000, 100 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.28 Å
R-free 0.160
|
|
3SSK
Engineered high-affinity halide-binding protein derived from YFP: bromide complex
Deposited 2011-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, Q183A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
BR BROMIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;17% PEG2000, 150 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.36 Å
R-free 0.172
|
|
3SSL
Engineered high-affinity halide-binding protein derived from YFP: iodide complex
Deposited 2011-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, Q183A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IOD IODIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;17% PEG2000, 150 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.45 Å
R-free 0.176
|
|
3SSP
Engineered low-affinity halide-binding protein derived from YFP: halide-free
Deposited 2011-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;14% PEG4000, 50 mM sodium acetate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.63 Å
R-free 0.174
|
|
3SST
Engineered low-affinity halide-binding protein derived from YFP: chloride complex
Deposited 2011-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;14% PEG4000, 50 mM sodium acetate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.40 Å
R-free 0.182
|
|
3SSV
Engineered low-affinity halide-binding protein derived from YFP: fluoride complex
Deposited 2011-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
F FLUORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;18% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.86 Å
R-free 0.213
|
|
3SSY
Engineered low-affinity halide-binding protein derived from YFP: iodide complex
Deposited 2011-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
IOD IODIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;22% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.77 Å
R-free 0.194
|
|
3ST0
Engineered medium-affinity halide-binding protein derived from YFP: halide-free
Deposited 2011-07-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q69T, S72A, K79R, V163A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 1
FMT FORMIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.4;290 K;10% PEG3000, 150 mM ammonium acetate, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.19 Å
R-free 0.166
|
|
3SV5
Engineered medium-affinity halide-binding protein derived from YFP: iodide complex
Deposited 2011-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q69T, S72A, K79R, V163A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 1
IOD IODIDE ION × 4
FMT FORMIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;290 K;21% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.53 Å
R-free 0.182
|
|
3SVB
Engineered medium-affinity halide-binding protein derived from YFP: fluoride complex
Deposited 2011-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q69T, S72A, K79R, V163A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.4;290 K;10% PEG3000, 150 mM ammonium acetate, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.30 Å
R-free 0.164
|
|
3SVC
Engineered medium-affinity halide-binding protein derived from YFP: chloride complex
Deposited 2011-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q69T, S72A, K79R, V163A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 1
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;290 K;20% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.31 Å
R-free 0.164
|
|
3SVD
Engineered medium-affinity halide-binding protein derived from YFP: bromide complex
Deposited 2011-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Q69T, S72A, K79R, V163A, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 1
BR BROMIDE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;290 K;21% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.78 Å
R-free 0.196
|
|
3SVE
Engineered low-affinity halide-binding protein derived from YFP: bromide complex
Deposited 2011-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S72A, K79R, T203Y, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
BR BROMIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;290 K;18% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.49 Å
R-free 0.179
|
|
3U8P
Cytochrome b562 integral fusion with EGFP
Deposited 2011-10-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–38(37 aa)
Chain A
40–238(199 aa)
|
Mutation:F64L
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F64L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HEM PROTOPORPHYRIN IX CONTAINING FE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.4;0.1 M MES/NAOH, PH 6.4, 200 MM magnesium acetate and 20% (W/V) PEG 8000; for cryoprotection 16% glycerol was added to the reservoir buffer, VAPOR DIFFUSION
|
Resolution 2.75 Å
R-free 0.242
|
|
3U8P
Cytochrome b562 integral fusion with EGFP
Deposited 2011-10-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–38(37 aa)
Chain B
40–238(199 aa)
|
Mutation:F64L
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F64L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HEM PROTOPORPHYRIN IX CONTAINING FE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.4;0.1 M MES/NAOH, PH 6.4, 200 MM magnesium acetate and 20% (W/V) PEG 8000; for cryoprotection 16% glycerol was added to the reservoir buffer, VAPOR DIFFUSION
|
Resolution 2.75 Å
R-free 0.242
|
|
3U8P
Cytochrome b562 integral fusion with EGFP
Deposited 2011-10-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–38(37 aa)
Chain C
40–238(199 aa)
|
Mutation:F64L
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F64L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HEM PROTOPORPHYRIN IX CONTAINING FE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.4;0.1 M MES/NAOH, PH 6.4, 200 MM magnesium acetate and 20% (W/V) PEG 8000; for cryoprotection 16% glycerol was added to the reservoir buffer, VAPOR DIFFUSION
|
Resolution 2.75 Å
R-free 0.242
|
|
3UFZ
Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code
Deposited 2011-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–229(228 aa)
Fragment:UNP RESIDUES 2-229
|
Mutation:T9A, W57F, Q80R, F99S, M153T, V163A, T200C, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;15% PEG 6000, 5% Glycerol, pH 8.5, vapor diffusion, sitting drop, temperature 293K
|
Resolution 1.85 Å
R-free 0.228
|
|
3UG0
Crystal structure of a Trp-less green fluorescent protein translated by the simplified genetic code
Deposited 2011-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–229(228 aa)
Fragment:UNP RESIDUES 2-229
|
Mutation:T9A, W57F, Q80R, F99S, M153T, V163A, T200C, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;17% PEG 20000, 100mM MES (pH6.5), vapor diffusion, sitting drop, temperature 293K
|
Resolution 2.09 Å
R-free 0.241
|
|
3V3D
Crystal Structure of an eYFP single mutant
Deposited 2011-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:V68L, S72A, Y203F, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;289 K;2M (NH4)2SO4, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 1.95 Å
R-free 0.229
|
|
3W1C
Structure of a pressure sensitive YFP variant YFP-G1
Deposited 2012-11-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, S72A, T204Y, H232L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;13-15% PEG 8000, 0.1M Bis-Tris buffer, 350-400mM calcium acetate , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.30 Å
R-free 0.211
|
|
3W1D
Structure of a pressure sensitive YFP variant YFP-G3
Deposited 2012-11-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S65G, V68L, S72A, T206Y, H234L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;13-17% PEG 8000, 0.1M Bis-Tris buffer, 200-400mM calcium acetate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.50 Å
R-free 0.208
|
|
3WLC
Crystal structure of dimeric GCaMP6m
Deposited 2013-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Fragment:UNP RESIDUES 37-55, 149-238, 2-144, 3-149
Chain A
2–144(143 aa)
Fragment:UNP RESIDUES 37-55, 149-238, 2-144, 3-149
|
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, N61D, D79Y, M77G, K78S, T80R, S82T, R91G
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, N61D, D79Y, M77G, K78S, T80R, S82T, R91G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;0.1M HEPES, 20% w/v PEG 3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.49 Å
R-free 0.225
|
|
3WLD
Crystal structure of monomeric GCaMP6m
Deposited 2013-11-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Fragment:UNP RESIDUES 37-55, 149-238, 2-144, 3-149
Chain A
2–144(143 aa)
Fragment:UNP RESIDUES 37-55, 149-238, 2-144, 3-149
|
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, N61D, D79Y, M77G, K78S, T80R, S82T, R91G
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, N61D, D79Y, M77G, K78S, T80R, S82T, R91G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.4;293 K;0.1M HEPES, 18% w/v PEG 3350, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.70 Å
R-free 0.212
|
|
3ZTF
X-ray Structure of the Cyan Fluorescent Protein mTurquoise2 (K206A mutant)
Deposited 2011-07-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
Fragment:RESIDUES 2-238
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.25;30 MG/ML PROTEIN, 19% PEG 8000, 100 MM MGCL2, 100 MM HEPES PH 7.25 .
|
Resolution 1.31 Å
R-free 0.177
|
|
4ANJ
MYOSIN VI (MDinsert2-GFP fusion) PRE-POWERSTROKE STATE (MG.ADP.AlF4)
Deposited 2012-03-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
Fragment:MYOSIN-6 RESIDUES 1-817, GFP RESIDUES 2-238
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 1
ALF TETRAFLUOROALUMINATE ION × 1
CA CALCIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
5% PEG 8000, 50 MM MES PH 5.5, 100 MM NH4SO4, 20 MM MGCL2, 20 MM NACL AND 3 % PROPAN-2-OL
|
Resolution 2.60 Å
R-free 0.288
|
|
4AR7
X-ray structure of the cyan fluorescent protein mTurquoise
Deposited 2012-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;6 MG/ML PROTEIN, 15% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 6.50
|
Resolution 1.23 Å
R-free 0.166
|
|
4AS8
X-ray structure of the cyan fluorescent protein Cerulean cryoprotected with ethylene glycol
Deposited 2012-04-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 11
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.25;13 MG/ML PROTEIN, 14% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 7.25
|
Resolution 1.02 Å
R-free 0.132
|
|
4B5Y
X-ray structure of the cyan fluorescent protein mTurquoise-GL (K206A mutant) in space group C222(1)
Deposited 2012-08-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;35 MG/ML PROTEIN, 14% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 6.50
|
Resolution 1.45 Å
R-free 0.179
|
|
4BDU
Bax BH3-in-Groove dimer (GFP)
Deposited 2012-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–230(230 aa)
Fragment:BAX RESIDUES 53-128
Chain B
1–230(230 aa)
Fragment:BAX RESIDUES 53-128
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
10% PEG3350, 20% MPD, 0.5% CHAPS, 0.1 M TRIS PH 8.0
|
Resolution 3.00 Å
R-free 0.246
|
|
4BDU
Bax BH3-in-Groove dimer (GFP)
Deposited 2012-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain C
1–230(230 aa)
Fragment:BAX RESIDUES 53-128
Chain D
1–230(230 aa)
Fragment:BAX RESIDUES 53-128
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
10% PEG3350, 20% MPD, 0.5% CHAPS, 0.1 M TRIS PH 8.0
|
Resolution 3.00 Å
R-free 0.246
|
|
4EN1
The 1.62A structure of a FRET-optimized Cerulean Fluorescent Protein
Deposited 2012-04-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 6
PEG DI(HYDROXYETHYL)ETHER × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;298 K;mother liquor consisting of 0.08 M sodium acetate trihydrate, 0.16 M ammonium sulfate, 9% (w/v) PEG4000, and 19% (v/v) glycerol. Hanging drops contained 2 uL protein solution and 1 uL mother liquor, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.62 Å
R-free 0.205
|
|
4EN1
The 1.62A structure of a FRET-optimized Cerulean Fluorescent Protein
Deposited 2012-04-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 4
PEG DI(HYDROXYETHYL)ETHER × 1
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7;298 K;mother liquor consisting of 0.08 M sodium acetate trihydrate, 0.16 M ammonium sulfate, 9% (w/v) PEG4000, and 19% (v/v) glycerol. Hanging drops contained 2 uL protein solution and 1 uL mother liquor, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.62 Å
R-free 0.205
|
|
4EUL
Crystal structure of enhanced Green Fluorescent Protein to 1.35A resolution reveals alternative conformations for Glu222
Deposited 2012-04-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 2
PEG DI(HYDROXYETHYL)ETHER × 4
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;0.1 M MES pH 6.5, 200 mM calcium acetate, 20% (w/v) PEG8000, 13% PEG200 for cryoprotection, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.35 Å
R-free 0.169
|
|
4GES
crystal structure of GFP-TYR151PYZ with an unnatural amino acid incorporation
Deposited 2012-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:P99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.9;289 K;60~100mg/ml protein sample in 50 mM Hepes, pH 7.5, reservior solution:16~19% PEG 3000, 100mM Tris pH 8.9,0.2M calcium acetate, VAPOR DIFFUSION, temperature 289K
|
Resolution 1.23 Å
R-free 0.188
|
|
4GF6
crystal structure of GFP with cuprum bound at the Incorporated metal Chelating Amino Acid PYZ151
Deposited 2012-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
4–238(235 aa)
|
Mutation:P99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CU COPPER (II) ION × 1
CA CALCIUM ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.9;289 K;60~100mg/ml protein sample in 50 mM Hepes, pH 7.5, reservior solution:17~19% PEG 3000, 100mM Tris pH 8.9,0.2M calcium acetate , VAPOR DIFFUSION, temperature 289K
|
Resolution 1.10 Å
R-free 0.179
|
|
4H47
1.9 angstrom CyPet structure at pH5.2
Deposited 2012-09-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:T9G, V11I, D19E, A87V, I167A, E172T, L194I
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.2;293 K;30% PEG 4000, 0.1M Sodium Acetate, 0.2M Lithium sulfate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.243
|
|
4H48
1.45 angstrom CyPet Structure at pH7.0
Deposited 2012-09-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:T9G, V11I, D19E, A87V, I167A, E172T, L194I
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;30% PEG 4000, 0.1M Tris-HCl, 0.2M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.45 Å
R-free 0.211
|
|
4IK1
High resolution structure of GCaMPJ at pH 8.5
Deposited 2012-12-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T, D362Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T, D362Y
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;289 K;Tris pH 8.5, (NH4)2SO4, 25% PEG 3350, 0.5% DDAO, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.00 Å
R-free 0.205
|
|
4IK3
High resolution structure of GCaMP3 at pH 8.5
Deposited 2012-12-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;289 K;Tris pH 8.5, (NH4)2SO4, 23% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.01 Å
R-free 0.214
|
|
4IK4
High resolution structure of GCaMP3 at pH 5.0
Deposited 2012-12-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;289 K;Bis-Tris pH 5.0, (NH4)2SO4 and 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.01 Å
R-free 0.212
|
|
4IK5
High resolution structure of Delta-REST-GCaMP3
Deposited 2012-12-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;289 K;Tris pH 8.5, NH4OAc, 23% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.50 Å
R-free 0.228
|
|
4IK8
High resolution structure of GCaMP3 dimer form 1 at pH 7.5
Deposited 2012-12-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;289 K;HEPES pH 7.5, (NH4)2SO4, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 1.55 Å
R-free 0.209
|
|
4IK9
High resolution structure of GCaMP3 dimer form 2 at pH 7.5
Deposited 2012-12-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 8
PEG DI(HYDROXYETHYL)ETHER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;289 K;HEPES pH 7.5, (NH4)2SO4, 21% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 1.80 Å
R-free 0.195
|
|
4J88
Dark-state structure of sfGFP containing the unnatural amino acid p-azido-phenylalanine at residue 66
Deposited 2013-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 4
EDO 1,2-ETHANEDIOL × 19
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.3;278 K;10 mg/mL protein and 100 mM Tris-HCl, pH 8.3, 2.8 M (NH4)2SO4 (200+200 nanoL drop against 60 microL reservoir), VAPOR DIFFUSION, SITTING DROP, temperature 278K
|
Resolution 2.08 Å
R-free 0.228
|
|
4J88
Dark-state structure of sfGFP containing the unnatural amino acid p-azido-phenylalanine at residue 66
Deposited 2013-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 5
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.3;278 K;10 mg/mL protein and 100 mM Tris-HCl, pH 8.3, 2.8 M (NH4)2SO4 (200+200 nanoL drop against 60 microL reservoir), VAPOR DIFFUSION, SITTING DROP, temperature 278K
|
Resolution 2.08 Å
R-free 0.228
|
|
4J89
Different photochemical events of a genetically encoded aryl azide define and modulate GFP fluorescence
Deposited 2013-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
EDO 1,2-ETHANEDIOL × 13
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5;283 K;20 mg/mL protein and 100 mM Tris-HCl, 2.4 M (NH4)2SO4, 1+1 microL drop against 85 microL reservoir, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
|
Resolution 2.10 Å
R-free 0.242
|
|
4J89
Different photochemical events of a genetically encoded aryl azide define and modulate GFP fluorescence
Deposited 2013-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 3
EDO 1,2-ETHANEDIOL × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5;283 K;20 mg/mL protein and 100 mM Tris-HCl, 2.4 M (NH4)2SO4, 1+1 microL drop against 85 microL reservoir, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
|
Resolution 2.10 Å
R-free 0.242
|
|
4J8A
Irradiated-state structure of sfGFP containing the unnatural amino acid p-azido-phenylalanine at residue 145
Deposited 2013-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, F145(HOX), M153T, V163A, A171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 6
EDO 1,2-ETHANEDIOL × 30
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.3;278 K;10 mg/mL protein and 100 mM Tris-HCl, pH 8.3, 2 M (NH4)2SO4, 200+200 nanoL drop against 60 microL reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 278K
|
Resolution 1.26 Å
R-free 0.165
|
|
4JFG
Crystal structure of sfGFP-66-HqAla
Deposited 2013-02-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HQY quinolin-8-ol × 2
CS CESIUM ION × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;15-20% polyethylene glycol (PEG) 3350, 0.13-0.18M CsCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 3.00 Å
R-free 0.312
|
|
4JFG
Crystal structure of sfGFP-66-HqAla
Deposited 2013-02-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–238(238 aa)
Chain D
1–238(238 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HQY quinolin-8-ol × 2
CS CESIUM ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;15-20% polyethylene glycol (PEG) 3350, 0.13-0.18M CsCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 3.00 Å
R-free 0.312
|
|
4JFG
Crystal structure of sfGFP-66-HqAla
Deposited 2013-02-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain E
1–238(238 aa)
Chain G
1–238(238 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HQY quinolin-8-ol × 2
CS CESIUM ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;15-20% polyethylene glycol (PEG) 3350, 0.13-0.18M CsCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 3.00 Å
R-free 0.312
|
|
4JFG
Crystal structure of sfGFP-66-HqAla
Deposited 2013-02-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain F
1–238(238 aa)
Chain H
1–238(238 aa)
|
Mutation:S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HQY quinolin-8-ol × 2
CS CESIUM ION × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;15-20% polyethylene glycol (PEG) 3350, 0.13-0.18M CsCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 3.00 Å
R-free 0.312
|
|
4JRB
Structure of Cockroach Allergen Bla g 1 Tandem Repeat as a EGFP fusion
Deposited 2013-03-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–229(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 2
PGT (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 1
D12 DODECANE × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;277 K;100mM Tris, 10% propanol, 20% PEG4K, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.41 Å
R-free 0.246
|
|
4KA9
Crystal structure analysis of single amino acid deletion mutations in EGFP
Deposited 2013-04-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L, S65T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 9
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
NA SODIUM ION × 2
ZN ZINC ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7;291 K;0.1 M HEPES, 0.01 M ZnCl2, 20% (w/v) PEG 6000, pH 7.0, vapor diffusion, temperature 291K
|
Resolution 1.58 Å
R-free 0.210
|
|
4KAG
Crystal structure analysis of a single amino acid deletion mutation in EGFP
Deposited 2013-04-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L, S65T, D190delta
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 16
SO4 SULFATE ION × 2
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.5;291 K;0.1 M Na cacodylate, 0.2 M NaCl, 1M Na citrate, pH 6.5, VAPOR DIFFUSION, temperature 291K
|
Resolution 1.12 Å
R-free 0.161
|
|
4KEX
Crystal structure analysis of a single amino acid deletion mutation in EGFP
Deposited 2013-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L, S65T, A227delta
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4;291 K;0.1 M MMT Buffer (Malic acid, MES and Tris), 25% (w/v) PEG 1500, pH 4.0, VAPOR DIFFUSION, temperature 291K
|
Resolution 1.60 Å
R-free 0.209
|
|
4KW4
Crystal Structure of Green Fluorescent Protein
Deposited 2013-05-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S147H, S202H, Q204H, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 8.2;294 K;50 mM HEPES pH 8.2, 50 mM MgCl2, 22% PEG4000, hanging drop, temperature 294K
|
Resolution 1.75 Å
R-free 0.204
|
|
4KW8
Crystal Structure of Green Fluorescent Protein
Deposited 2013-05-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S147H, S202H, Q204H, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NI NICKEL (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 8.2;294 K;50 mM HEPES pH 8.2, 50 mM MgCl2, 22% PEG4000, hanging drop, temperature 294K
|
Resolution 2.46 Å
R-free 0.225
|
|
4KW9
Crystal Structure of Green Fluorescent Protein
Deposited 2013-05-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S147H, S202H, Q204H, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ZN ZINC ION × 5
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop;pH 8.2;294 K;50 mM HEPES pH 8.2, 50 mM MgCl2, 22% PEG4000, hanging drop, temperature 294K
|
Resolution 1.80 Å
R-free 0.210
|
|
4L12
Crystal structure of EGFP-based Calcium Sensor CatchER complexed with Gd
Deposited 2013-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–230(229 aa)
Fragment:SEE REMARK 999
|
Mutation:F64L, S65T, S147E, M153T, V163A, S202D, Q204E, F223E, T225E
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GD GADOLINIUM ATOM × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;51 mM HEPES, pH 7.0, 1 mM beta-mercaptoethanol, 50 mM sodium acetate, 17% PEG4000, 2 mM gadolinium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.78 Å
R-free 0.220
|
|
4L13
Crystal structure of Ligand Free EGFP-based Calcium Sensor CatchER
Deposited 2013-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–230(229 aa)
Fragment:SEE REMARK 999
|
Mutation:F64L, S65T, S147E, M153T, V163A, S202D, Q204E, F223E, T225E
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ACY ACETIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;51 mM HEPES, pH 7.0, 1 mM beta-mercaptoethanol, 50 mM sodium acetate, 17% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.66 Å
R-free 0.203
|
|
4L1I
Crystal structure of EGFP-based Calcium Sensor CatchER complexed with Ca
Deposited 2013-06-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–230(229 aa)
Fragment:SEE REMARK 999
|
Mutation:F64L, S65T, S147E, M153T, V163A, S202D, Q204E, F223E, T225E
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;0.9 mM protein, 53 mM HEPES, pH 7.0, 1 mM beta-mercaptoethanol, 50 mM sodium acetate, 16% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å
R-free 0.191
|
|
4LQT
1.10A resolution crystal structure of a superfolder green fluorescent protein (W57A) mutant
Deposited 2013-07-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S30R, Y39N, W57A, F99S, N105T, Y145F, M153T, V163A, I171V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.5;293 K;40% (v/v) Isopropanol, 0.1 M Imidazole acid, 15% (w/v) PEG 8000, pH 6.5, vapor diffusion, temperature 293K
|
Resolution 1.10 Å
R-free 0.146
|
|
4LQU
1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant
Deposited 2013-07-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S30R, Y39N, W57G, F99S, N105T, Y145F, M153T, V163A, I171V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;293 K;25% (v/v) PEG 3350, 0.1 M bis-tris, pH 5.5, vapor diffusion, temperature 293K
|
Resolution 1.60 Å
R-free 0.182
|
|
4LQU
1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant
Deposited 2013-07-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:S30R, Y39N, W57G, F99S, N105T, Y145F, M153T, V163A, I171V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;293 K;25% (v/v) PEG 3350, 0.1 M bis-tris, pH 5.5, vapor diffusion, temperature 293K
|
Resolution 1.60 Å
R-free 0.182
|
|
4LQU
1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant
Deposited 2013-07-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–238(237 aa)
|
Mutation:S30R, Y39N, W57G, F99S, N105T, Y145F, M153T, V163A, I171V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;293 K;25% (v/v) PEG 3350, 0.1 M bis-tris, pH 5.5, vapor diffusion, temperature 293K
|
Resolution 1.60 Å
R-free 0.182
|
|
4LQU
1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant
Deposited 2013-07-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
2–238(237 aa)
|
Mutation:S30R, Y39N, W57G, F99S, N105T, Y145F, M153T, V163A, I171V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 5.5;293 K;25% (v/v) PEG 3350, 0.1 M bis-tris, pH 5.5, vapor diffusion, temperature 293K
|
Resolution 1.60 Å
R-free 0.182
|
|
4LW5
Crystal structure of all-trans green fluorescent protein
Deposited 2013-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
Fragment:SEE REMARK 999
|
Mutation:yes
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;295 K;0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å
R-free 0.281
|
|
4LW5
Crystal structure of all-trans green fluorescent protein
Deposited 2013-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
Fragment:SEE REMARK 999
|
Mutation:yes
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;295 K;0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å
R-free 0.281
|
|
4LW5
Crystal structure of all-trans green fluorescent protein
Deposited 2013-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–238(237 aa)
Fragment:SEE REMARK 999
|
Mutation:yes
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;295 K;0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å
R-free 0.281
|
|
4LW5
Crystal structure of all-trans green fluorescent protein
Deposited 2013-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
2–238(237 aa)
Fragment:SEE REMARK 999
|
Mutation:yes
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;295 K;0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å
R-free 0.281
|
|
4LW5
Crystal structure of all-trans green fluorescent protein
Deposited 2013-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
2–238(237 aa)
Fragment:SEE REMARK 999
|
Mutation:yes
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;295 K;0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å
R-free 0.281
|
|
4N3D
Crystal structure of the dimeric variant EGFP-K162Q in P61 space group
Deposited 2013-10-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–232(232 aa)
|
Mutation:K162Q, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PO4 PHOSPHATE ION × 2
K POTASSIUM ION × 3
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Two microliters of protein 10mg/ml in buffer 20 Tris 8.0 100 NaCl mixed with equal amount of resevoir solution - 0.056 NaH2PO4, 1.344 M K2HPO4 pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.34 Å
R-free 0.194
|
|
4N3D
Crystal structure of the dimeric variant EGFP-K162Q in P61 space group
Deposited 2013-10-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–232(232 aa)
|
Mutation:K162Q, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Two microliters of protein 10mg/ml in buffer 20 Tris 8.0 100 NaCl mixed with equal amount of resevoir solution - 0.056 NaH2PO4, 1.344 M K2HPO4 pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.34 Å
R-free 0.194
|
|
4OGS
Crystal structure of GFP S205A/T203V at 2.2 A resolution
Deposited 2014-01-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S205A, T203V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.8;298 K;Crystals were produced using 1 uL protein (26 mg/ml in 0.1 M imidazole, pH 7.8) mixed with 1 uL well solution, Crystallization screens varied from 22% to 32% (w:v) polyethylene glycol monomethyl ether (PEG) 2000 and 0.05M to 0.2M KBr at room temperature, for a range of pH values near neutrality, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.21 Å
R-free 0.306
|
|
4OGS
Crystal structure of GFP S205A/T203V at 2.2 A resolution
Deposited 2014-01-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:S205A, T203V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.8;298 K;Crystals were produced using 1 uL protein (26 mg/ml in 0.1 M imidazole, pH 7.8) mixed with 1 uL well solution, Crystallization screens varied from 22% to 32% (w:v) polyethylene glycol monomethyl ether (PEG) 2000 and 0.05M to 0.2M KBr at room temperature, for a range of pH values near neutrality, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.21 Å
R-free 0.306
|
|
4ORN
Blue Fluorescent Protein mKalama1
Deposited 2014-02-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:several
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 2
SO4 SULFATE ION × 3
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;294 K;1.8 M ammonium sulfate, 0.01 M cobalt chloride, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 1.71 Å
R-free 0.183
|
|
4ORN
Blue Fluorescent Protein mKalama1
Deposited 2014-02-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:several
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 3
CL CHLORIDE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;294 K;1.8 M ammonium sulfate, 0.01 M cobalt chloride, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 1.71 Å
R-free 0.183
|
|
4P1Q
GREEN FLUORESCENT PROTEIN E222H VARIANT
Deposited 2014-02-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
3–231(229 aa)
|
Mutation:E222H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291 K;Na-acetate, PEG 3350
|
Resolution 1.50 Å
R-free 0.172
|
|
4P7H
Structure of Human beta-Cardiac Myosin Motor Domain::GFP chimera
Deposited 2014-03-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
5–238(234 aa)
Fragment:UNP P12883 residues 1-787,UNP P42212 residues 5-238
|
Mutation:Q80R, K101N, V163A, I167T, S175G, D190N
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;10% Tacsimate, pH 6.0, 10% glycerol, 14-15% PEG 3350, 0.2 mM MgCL2, and 5 mM TCEP
|
Resolution 3.20 Å
R-free 0.284
|
|
4P7H
Structure of Human beta-Cardiac Myosin Motor Domain::GFP chimera
Deposited 2014-03-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
5–238(234 aa)
Fragment:UNP P12883 residues 1-787,UNP P42212 residues 5-238
|
Mutation:Q80R, K101N, V163A, I167T, S175G, D190N
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;293 K;10% Tacsimate, pH 6.0, 10% glycerol, 14-15% PEG 3350, 0.2 mM MgCL2, and 5 mM TCEP
|
Resolution 3.20 Å
R-free 0.284
|
|
4PA0
Omecamtiv Mercarbil binding site on the Human Beta-Cardiac Myosin Motor Domain
Deposited 2014-04-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
5–234(230 aa)
Fragment:UNP P12883 residues 1-787, UNP P42212 residues 5-234
|
Mutation:Q80R, V163A, I167T, S175G, D190N
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
2OW methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;295 K;Tacsimate, pH 6.0, PEG 3350, glycerol, MgCL2, TCEP and ligand, omecamptiv mercarbil
|
Resolution 2.25 Å
R-free 0.246
|
|
4PA0
Omecamtiv Mercarbil binding site on the Human Beta-Cardiac Myosin Motor Domain
Deposited 2014-04-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
5–234(230 aa)
Fragment:UNP P12883 residues 1-787, UNP P42212 residues 5-234
|
Mutation:Q80R, V163A, I167T, S175G, D190N
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
2OW methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate × 1
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;295 K;Tacsimate, pH 6.0, PEG 3350, glycerol, MgCL2, TCEP and ligand, omecamptiv mercarbil
|
Resolution 2.25 Å
R-free 0.246
|
|
4PFE
Crystal structure of vsfGFP-0
Deposited 2014-04-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–229(228 aa)
Chain B
2–229(228 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1M Sodium acetate pH 4.6 30 %(v/v) PEG 400, 20mM Hepes pH 7.5, 150mM NaCl
|
Resolution 2.60 Å
R-free 0.255
|
|
4U2V
Bak BH3-in-Groove dimer (GFP)
Deposited 2014-07-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–230(230 aa)
Fragment:UNP P42212 residues 1-230, UNP Q16611 residues 68-148
Chain C
1–230(230 aa)
Fragment:UNP P42212 residues 1-230, UNP Q16611 residues 68-148
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CAC CACODYLATE ION × 1
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;281 K;4.5% PEG 8000, 40% MPD, 100 mM tri-sodium citrate, 90 mM cacodylate acid pH 6.5 and 1% Octyl glucoside
|
Resolution 2.30 Å
R-free 0.250
|
|
4U2V
Bak BH3-in-Groove dimer (GFP)
Deposited 2014-07-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–230(230 aa)
Fragment:UNP P42212 residues 1-230, UNP Q16611 residues 68-148
Chain D
1–230(230 aa)
Fragment:UNP P42212 residues 1-230, UNP Q16611 residues 68-148
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CAC CACODYLATE ION × 5
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;281 K;4.5% PEG 8000, 40% MPD, 100 mM tri-sodium citrate, 90 mM cacodylate acid pH 6.5 and 1% Octyl glucoside
|
Resolution 2.30 Å
R-free 0.250
|
|
4XBI
Structure Of A Malarial Protein Involved in Proteostasis
Deposited 2014-12-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;2 M ammonium sulphate
100 mM Hepes pH=7
protein at 13-15 mg/ml
|
Resolution 2.01 Å
R-free 0.202
|
|
4XBI
Structure Of A Malarial Protein Involved in Proteostasis
Deposited 2014-12-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;2 M ammonium sulphate
100 mM Hepes pH=7
protein at 13-15 mg/ml
|
Resolution 2.01 Å
R-free 0.202
|
|
4XGY
GFP based antibody (fluorobody)
Deposited 2015-01-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–173(172 aa)
Chain A
174–238(65 aa)
|
Mutation:R30S,N39Y,L64F,R80Q,S99F,T105N,F145Y,T153M,A163V,V219A
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:R30S,N39Y,L64F,R80Q,S99F,T105N,F145Y,T153M,A163V,V219A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;40% PEG400, 0.1M Hepes, pH 7.0
|
Resolution 1.49 Å
R-free 0.167
|
|
4XL5
X-ray structure of bGFP-A / EGFP complex
Deposited 2015-01-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.05M MgAc, 0.1M NaAc, 5%-15% PEG 8K
|
Resolution 2.00 Å
R-free 0.268
|
|
4XOV
Structure of rsGreen0.7 in the green-off-state
Deposited 2015-01-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;289 K;0.15 M NaBr, 30% PEG 2000 MME
|
Resolution 1.20 Å
R-free 0.168
|
|
4XOW
Structure of rsGreen0.7 in the green-on-state
Deposited 2015-01-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.4;289 K;0.1 M Tris pH 8.5, 25% PEG 3350
|
Resolution 1.25 Å
R-free 0.165
|
|
4XVP
X-ray structure of bGFP-C / EGFP complex
Deposited 2015-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.9;293 K;50 mM tricine pH 6.9, 25% PEG4K
|
Resolution 3.40 Å
R-free 0.292
|
|
4XVP
X-ray structure of bGFP-C / EGFP complex
Deposited 2015-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Mutation:F64L, S65T, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.9;293 K;50 mM tricine pH 6.9, 25% PEG4K
|
Resolution 3.40 Å
R-free 0.292
|
|
4XVP
X-ray structure of bGFP-C / EGFP complex
Deposited 2015-01-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
2–238(237 aa)
|
Mutation:F64L, S65T, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.9;293 K;50 mM tricine pH 6.9, 25% PEG4K
|
Resolution 3.40 Å
R-free 0.292
|
|
4Z4K
Crystal structure of GFP-TAX1BP1 UBZ1+2 domain fusion protein
Deposited 2015-04-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–230(230 aa)
Fragment:UBZ1 and UBZ2
Chain B
1–230(230 aa)
Fragment:UBZ1 and UBZ2
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ZN ZINC ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;0.2 M Lithium sulfate monohydrate, 0.1 M Tris pH 8.5, 25% w/v PEG 3350.
|
Resolution 2.80 Å
R-free 0.280
|
|
4Z4M
Crystal structure of GFP-TAX1BP1 UBZ2 domain fusion protein
Deposited 2015-04-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–230(230 aa)
Fragment:UBZ2
Chain B
1–230(230 aa)
Fragment:UBZ2
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ZN ZINC ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.4;293 K;0.2 M Ammonium fluoride, 20% w/v Polyethylene glycol 3,350
|
Resolution 2.15 Å
R-free 0.298
|
|
4ZF3
Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D; circular permutant ( 50-51)
Deposited 2015-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
51–237(187 aa)
Chain A
4–50(47 aa)
|
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128Y, Y145F, H148D, M153T, K156N, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128Y, Y145F, H148D, M153T, K156N, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;50 mM sodium acetate, 100 mM NaCl, 5% (wt/vol) PEG 3550
|
Resolution 1.90 Å
R-free 0.261
|
|
4ZF3
Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D; circular permutant ( 50-51)
Deposited 2015-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
51–237(187 aa)
Chain B
4–50(47 aa)
|
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128Y, Y145F, H148D, M153T, K156N, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128Y, Y145F, H148D, M153T, K156N, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;50 mM sodium acetate, 100 mM NaCl, 5% (wt/vol) PEG 3550
|
Resolution 1.90 Å
R-free 0.261
|
|
4ZF4
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51)
Deposited 2015-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
51–237(187 aa)
Chain A
4–50(47 aa)
|
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;50 mM sodium acetate, 100 mM NaCl, 15% (wt/vol) PEG 3550
|
Resolution 1.82 Å
R-free 0.246
|
|
4ZF4
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51)
Deposited 2015-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
51–237(187 aa)
Chain B
4–50(47 aa)
|
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;50 mM sodium acetate, 100 mM NaCl, 15% (wt/vol) PEG 3550
|
Resolution 1.82 Å
R-free 0.246
|
|
4ZF5
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl2Y), H148D; circular permutant ( 50-51)
Deposited 2015-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
51–237(187 aa)
Chain A
4–50(47 aa)
|
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;50 mM sodium acetate, 100 mM NaCl, 5% (wt/vol) PEG 3550
|
Resolution 1.70 Å
R-free 0.232
|
|
4ZF5
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl2Y), H148D; circular permutant ( 50-51)
Deposited 2015-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
51–237(187 aa)
Chain B
4–50(47 aa)
|
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;50 mM sodium acetate, 100 mM NaCl, 5% (wt/vol) PEG 3550
|
Resolution 1.70 Å
R-free 0.232
|
|
5AQB
DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography
Deposited 2015-09-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–231(230 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5;PEG3350 20.0% W/V, SODIUM FORMATE 0.2 M, BIS TRIS PROPANE 0.1 M, PH 8
|
Resolution 1.37 Å
R-free 0.177
|
|
5BKF
Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, Glycine bound, desensitized state
Deposited 2021-03-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
2–238(237 aa)
|
Mutation:four substitutions in the GFP portion
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 9
GLY GLYCINE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
5BKG
Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, glycine bound, (semi)open state
Deposited 2021-03-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
2–238(237 aa)
|
Mutation:four substitutions in the GFP
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 9
GLY GLYCINE × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
5DTX
Crystal structure of rsEGFP2 in the fluorescent on-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.1;293 K;0.1 M HEPES, 1.7 M ammonium sulphate
|
Resolution 1.45 Å
R-free 0.206
|
|
5DTY
Crystal structure of rsEGFP2 in the non-fluorescent off-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.1;293 K;0.1 M HEPES, 1.7 M ammonium sulphate
|
Resolution 1.50 Å
R-free 0.224
|
|
5DTZ
Crystal structure of rsFolder in the fluorescent on-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris, 20% PEG3350
|
Resolution 1.50 Å
R-free 0.202
|
|
5DTZ
Crystal structure of rsFolder in the fluorescent on-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris, 20% PEG3350
|
Resolution 1.50 Å
R-free 0.202
|
|
5DTZ
Crystal structure of rsFolder in the fluorescent on-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris, 20% PEG3350
|
Resolution 1.50 Å
R-free 0.202
|
|
5DTZ
Crystal structure of rsFolder in the fluorescent on-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris, 20% PEG3350
|
Resolution 1.50 Å
R-free 0.202
|
|
5DU0
Crystal structure of rsFolder in the non-fluorescent off-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris, 20% PEG3350
|
Resolution 2.35 Å
R-free 0.257
|
|
5DU0
Crystal structure of rsFolder in the non-fluorescent off-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris, 20% PEG3350
|
Resolution 2.35 Å
R-free 0.257
|
|
5DU0
Crystal structure of rsFolder in the non-fluorescent off-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris, 20% PEG3350
|
Resolution 2.35 Å
R-free 0.257
|
|
5DU0
Crystal structure of rsFolder in the non-fluorescent off-state
Deposited 2015-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;0.1 M Tris, 20% PEG3350
|
Resolution 2.35 Å
R-free 0.257
|
|
5F9G
pnGFP1.5-Y.Cro: circularly permuted green fluorescent protein (with a tyrosine-derived chromophore)
Deposited 2015-12-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
145–238(94 aa)
Fragment:UNP residues 145-238, UNP residues 2-144
Chain A
2–144(143 aa)
Fragment:UNP residues 145-238, UNP residues 2-144
|
Mutation:circular permutation,circular permutation
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:circular permutation,circular permutation
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;295 K;pnGFP1.5-Y.Cro in buffer 50mM Hepes pH 7.5, 0.3M NaCl, 1mM beta-mercaptoethanol, A280=52; Crystals were grown in drops of 1ul protein solution: 1ul well solution containing 20-22% PEG 3350, 0.25M potassium thiocyanate, 0.1M Tris pH 8.0
|
Resolution 2.77 Å
R-free 0.295
|
|
5FGU
Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion
Deposited 2015-12-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–229(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 6
EDO 1,2-ETHANEDIOL × 4
ACT ACETATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;277 K;Crystals were grown by mixing 0.25uL of protein (13.3mg/mL) with 0.25uL mother liquor (45mM Na cacodylate pH 6, 13.5mM magnesium sulfate, 1.53M ammonium sulfate), using sitting drop vapor diffusion
|
Resolution 1.90 Å
R-free 0.201
|
|
5FGU
Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion
Deposited 2015-12-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–229(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 12
EDO 1,2-ETHANEDIOL × 8
ACT ACETATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;277 K;Crystals were grown by mixing 0.25uL of protein (13.3mg/mL) with 0.25uL mother liquor (45mM Na cacodylate pH 6, 13.5mM magnesium sulfate, 1.53M ammonium sulfate), using sitting drop vapor diffusion
|
Resolution 1.90 Å
R-free 0.201
|
|
5FJI
Three-dimensional structures of two heavily N-glycosylated Aspergillus sp. Family GH3 beta-D-glucosidases
Deposited 2015-10-09
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
20–863(844 aa)
Fragment:MATURE PEPTIDE COMPRISING RESIDUES 20-863
Chain B
20–863(844 aa)
Fragment:MATURE PEPTIDE COMPRISING RESIDUES 20-863
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4
EDO 1,2-ETHANEDIOL × 39
IMD IMIDAZOLE × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
0.1M MIB (PACT SCREEN BUFFER)PH 5.0, 21 % PEG 1500, 25 % ETHYLENE GLYCOL
|
Resolution 1.95 Å
R-free 0.174
|
|
5HBD
Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group C2
Deposited 2015-12-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 7
PDB declaration: heptameric
|
Chain A
1–238(238 aa)
|
Mutation:S65A, V68L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;0.1M sodium citrate, 10% MPD, 0.1M HEPES, pH 7.5
|
Resolution 1.65 Å
R-free 0.205
|
|
5HGE
Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P212121
Deposited 2016-01-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 6
PDB declaration: The biological unit is a filament with 2 sub 1 screw symmetry. One filament is composed of chain A and the following symmetry operators 1/2+X,1/2-Y,-Z; -1+X,Y,Z; -1/2+X,1/2-Y,-Z; 1+X,Y,Z; 3/2+X,1/2-Y,-Z; 2+X,Y,Z; etc.
|
Chain A
1–238(238 aa)
|
Mutation:S65A, V68L and S72A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;30% MPD, 20% ethanol, 20 mM HEPES, pH 7.5, 10 mM NaCl
|
Resolution 1.86 Å
R-free 0.211
|
|
5HW9
Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P21
Deposited 2016-01-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain A
1–238(238 aa)
|
Mutation:S65A, V68L, S72A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;10% 1,6-hexanediol, sodium cacodylate pH 6.5, 5 mM magnesium chloride, 200 mM KCl
|
Resolution 3.00 Å
R-free 0.232
|
|
5HZO
GFP mutant S205G
Deposited 2016-02-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–235(235 aa)
Fragment:UNP residues 1-235
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MLT D-MALATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;295 K;1.0 M malate, pH 8.0, Tris, 0.3 M NaCl, 1% n-nonyl-beta-D maltoside
|
Resolution 2.49 Å
R-free 0.276
|
|
5HZO
GFP mutant S205G
Deposited 2016-02-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–235(235 aa)
Fragment:UNP residues 1-235
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MLT D-MALATE × 1
UMQ UNDECYL-MALTOSIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;295 K;1.0 M malate, pH 8.0, Tris, 0.3 M NaCl, 1% n-nonyl-beta-D maltoside
|
Resolution 2.49 Å
R-free 0.276
|
|
5J2O
Crystal structure of the cyan fluorescence protein Cerulean S175G mutant
Deposited 2016-03-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F65L/Y145A/N146I/H148D/M153T/V163A/S175G/H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;16% PEG 8000, 0.1M MGCL2, 0.1M HEPES PH 7.5
|
Resolution 1.50 Å
R-free 0.188
|
|
5J3N
C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin
Deposited 2016-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
Fragment:UNP Residues 2-238, 887-1038
Chain B
2–238(237 aa)
Fragment:UNP Residues 2-238, 887-1038
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;277 K;20% (w/v) PEG 3350, 0.2 M KH2PO4, 4% v/v acetone
|
Resolution 2.45 Å
R-free 0.254
|
|
5J3N
C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin
Deposited 2016-03-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Fragment:UNP Residues 2-238, 887-1038
Chain B
2–238(237 aa)
Fragment:UNP Residues 2-238, 887-1038
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;277 K;20% (w/v) PEG 3350, 0.2 M KH2PO4, 4% v/v acetone
|
Resolution 2.45 Å
R-free 0.254
|
|
5KTG
Crystal structure of mouse Bak BH3-in-groove homodimer (GFP)
Deposited 2016-07-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–230(230 aa)
Fragment:GFP, GS linker, BAK (UNP residues 66-144)
Chain B
1–230(230 aa)
Fragment:GFP, GS linker, BAK (UNP residues 66-144)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;7-12% PEG3350, 20% MPD, 100 mM Tris, pH 7.0-8.5, 0.5% CHAPS
|
Resolution 2.80 Å
R-free 0.275
|
|
5KTG
Crystal structure of mouse Bak BH3-in-groove homodimer (GFP)
Deposited 2016-07-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–230(230 aa)
Fragment:GFP, GS linker, BAK (UNP residues 66-144)
Chain B
1–230(230 aa)
Fragment:GFP, GS linker, BAK (UNP residues 66-144)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;7-12% PEG3350, 20% MPD, 100 mM Tris, pH 7.0-8.5, 0.5% CHAPS
|
Resolution 2.80 Å
R-free 0.275
|
|
5LEL
Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_10_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein
Deposited 2016-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;PEG3350 23.2% w/v, Sodium acetate 0.2 M, Bis-Tris propane 0.1 M, pH 8.0
|
Resolution 3.10 Å
R-free 0.306
|
|
5LEL
Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_10_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein
Deposited 2016-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;PEG3350 23.2% w/v, Sodium acetate 0.2 M, Bis-Tris propane 0.1 M, pH 8.0
|
Resolution 3.10 Å
R-free 0.306
|
|
5LEL
Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_10_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein
Deposited 2016-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain I
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;293 K;PEG3350 23.2% w/v, Sodium acetate 0.2 M, Bis-Tris propane 0.1 M, pH 8.0
|
Resolution 3.10 Å
R-free 0.306
|
|
5LEM
Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_11_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein
Deposited 2016-06-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 9;293 K;PEG6000 20% w/v, TAPS 0.02 M, pH 9.0
|
Resolution 2.98 Å
R-free 0.295
|
|
5MA3
GFP-binding DARPin fusion gc_R11
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.2 M Sodium Acetate, 0.1 M Sodium Cacodylate pH 6.5, 30% w/v PEG 8000
|
Resolution 1.70 Å
R-free 0.192
|
|
5MA4
GFP-binding DARPin fusion gc_K7
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.2M Sodium Acetate trihydrate, 0.1M TRIS HCl pH 8.5, 30%w/v PEG 4000
|
Resolution 1.40 Å
R-free 0.170
|
|
5MA5
GFP-binding DARPin fusion gc_K11
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 1
CIT CITRIC ACID × 2
IPA ISOPROPYL ALCOHOL × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1M tri Sodium citrate pH 5.6, 20% v/v 2-Propanol, 20%w/v PEG 4000
|
Resolution 1.85 Å
R-free 0.184
|
|
5MA5
GFP-binding DARPin fusion gc_K11
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 2
CIT CITRIC ACID × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1M tri Sodium citrate pH 5.6, 20% v/v 2-Propanol, 20%w/v PEG 4000
|
Resolution 1.85 Å
R-free 0.184
|
|
5MA6
GFP-binding DARPin 3G124nc
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PO4 PHOSPHATE ION × 5
EDO 1,2-ETHANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1M Na-Acetate pH 5.5, 0.5M KH2PO4
|
Resolution 2.30 Å
R-free 0.241
|
|
5MA8
GFP-binding DARPin 3G124nc
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.3 M Sodium Acetate. 0.1M TRIS (HOAc) pH 7.5, 25% PEG 2K MME
|
Resolution 2.35 Å
R-free 0.236
|
|
5MA8
GFP-binding DARPin 3G124nc
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.3 M Sodium Acetate. 0.1M TRIS (HOAc) pH 7.5, 25% PEG 2K MME
|
Resolution 2.35 Å
R-free 0.236
|
|
5MA9
GFP-binding DARPin fusion gc_R11
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4
|
Resolution 1.57 Å
R-free 0.203
|
|
5MA9
GFP-binding DARPin fusion gc_R11
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4
|
Resolution 1.57 Å
R-free 0.203
|
|
5MA9
GFP-binding DARPin fusion gc_R11
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4
|
Resolution 1.57 Å
R-free 0.203
|
|
5MA9
GFP-binding DARPin fusion gc_R11
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4
|
Resolution 1.57 Å
R-free 0.203
|
|
5MAD
GFP-binding DARPin 3G61
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate
|
Resolution 1.53 Å
R-free 0.199
|
|
5MAD
GFP-binding DARPin 3G61
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate
|
Resolution 1.53 Å
R-free 0.199
|
|
5MAD
GFP-binding DARPin 3G61
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate
|
Resolution 1.53 Å
R-free 0.199
|
|
5MAD
GFP-binding DARPin 3G61
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate
|
Resolution 1.53 Å
R-free 0.199
|
|
5MAK
GFP-binding DARPin fusion gc_R7
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CIT CITRIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1M Tri Sodium Citrate pH 5.6, 20% v/v 2-Propanol, 20%w/v PEG 4000
|
Resolution 2.50 Å
R-free 0.304
|
|
5MAK
GFP-binding DARPin fusion gc_R7
Deposited 2016-11-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CIT CITRIC ACID × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1M Tri Sodium Citrate pH 5.6, 20% v/v 2-Propanol, 20%w/v PEG 4000
|
Resolution 2.50 Å
R-free 0.304
|
|
5MSE
GFP nuclear transport receptor mimic 3B8
Deposited 2017-01-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 8
IMD IMIDAZOLE × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.1;293 K;5-9% PEG8000, 28% glycerol, 100?mM Imidazole (pH 7.1)
|
Resolution 1.66 Å
R-free 0.206
|
|
5N9O
EGFP(enhanced green fluorescent protein) mutant - L232H
Deposited 2017-02-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:L232H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
AE4 3,6,9,12,15-PENTAOXAHEPTADECAN-1-OL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6;288 K;2-propanol ,
MES monohydrate,
PEG 2000
|
Resolution 1.53 Å
R-free 0.211
|
|
5O89
Crystal Structure of rsEGFP2 in the fluorescent on-state determined by SFX
Deposited 2017-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;293 K;2 M ammonium sulphate, 20 mM NaCl, 120 mM HEPES
|
Resolution 1.70 Å
R-free 0.195
|
|
5O8A
Crystal Structure of rsEGFP2 in the non-fluorescent off-state determined by SFX
Deposited 2017-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;293 K;2 M ammonium sulphate, 20 mM NaCl, 120 mM HEPES
|
Resolution 1.70 Å
R-free 0.184
|
|
5O8B
Difference-refined excited-state structure of rsEGFP2 1ps following 400nm-laser irradiation of the off-state.
Deposited 2017-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;293 K;2 M ammonium sulphate, 20 mM NaCl, 120 mM HEPES
|
Resolution 1.70 Å
R-free 0.311
|
|
5O8C
Composite structure of rsEGFP2 1ps following 400nm-laser irradiation of the off-state.
Deposited 2017-06-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;293 K;2 M ammonium sulphate, 20 mM NaCl, 120 mM HEPES
|
Resolution 1.70 Å
R-free 0.176
|
|
5OX8
Structure of Enhanced Cyan Fluorescent Protein at pH 5.0
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, Y66W, N146I, M153T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;293 K;100mM citric acid pH 5.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.29 Å
R-free 0.166
|
|
5OX9
Structure of the Cyan Fluorescent Protein SCFP3A at pH 4.5
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, Y66W, S72A, N146I, H148D, M153T, V163A, S175G
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;293 K;100mM citric acid pH4.5, 16% PEG8000, 100mM MgCl2
|
Resolution 1.56 Å
R-free 0.172
|
|
5OXA
Structure of the S205A mutant of the Cyan Fluorescent Protein Cerulean at pH 7.0
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, Y66W, N146I, H148D, M153T, S205A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;100mM HEPES buffer pH 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.16 Å
R-free 0.139
|
|
5OXB
Structure of blue-light irradiated Cerulean
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, Y66W, N146I, H148D, M153T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;100mM HEPES pH 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.38 Å
R-free 0.157
|
|
5OXC
Structure of Cerulean Fluorescent Protein at 1.02 Angstrom resolution
Deposited 2017-09-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L, S65T, Y66W, N146I, H148D, M153T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100mM HEPES 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.02 Å
R-free 0.115
|
|
5T3I
cyan fluorescence protein soaked with selenourea for 5 min
Deposited 2016-08-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SEY selenourea × 13
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;293 K;16% (w/v) PEG 3350, 50 mM citric acid, and 50 mM bis-tris propane buffer pH 5.0.
|
Resolution 1.60 Å
R-free 0.177
|
|
5WJ2
Crystal structure of the green fluorescent protein Clover
Deposited 2017-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S30R, Y39N, S66X, Y66X, G66X, Q69A, F99S, N105T, Y145F, M153T, V163A, I171V, and T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;293 K;100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 2.41 Å
R-free 0.217
|
|
5WJ2
Crystal structure of the green fluorescent protein Clover
Deposited 2017-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:S30R, Y39N, S66X, Y66X, G66X, Q69A, F99S, N105T, Y145F, M153T, V163A, I171V, and T203H
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;293 K;100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 2.41 Å
R-free 0.217
|
|
5WJ3
Crystal structure of green fluorescent protein Clover mutant S147C/Q204C
Deposited 2017-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
3–238(236 aa)
|
Mutation:S30R, Y39N, Q69A, F99S, N105T, Y145F, S147C, M153T, V163A, T203H, Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;293 K;100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 1.35 Å
R-free 0.162
|
|
5WJ3
Crystal structure of green fluorescent protein Clover mutant S147C/Q204C
Deposited 2017-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
3–238(236 aa)
|
Mutation:S30R, Y39N, Q69A, F99S, N105T, Y145F, S147C, M153T, V163A, T203H, Q204C
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;293 K;100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 1.35 Å
R-free 0.162
|
|
5WJ4
Crystal structure of redox-sensitive green fluorescent protein Clover mutant roClover1
Deposited 2017-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S30R, Y39N, S65X, Y65X, G65X, Q69A, F99S, N105T, Y145F, S147C, H148D, M153T, V163A, I171V, T203V, Q204C, E222Q.
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;293 K;100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 1.63 Å
R-free 0.193
|
|
5WJ4
Crystal structure of redox-sensitive green fluorescent protein Clover mutant roClover1
Deposited 2017-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:S30R, Y39N, S65X, Y65X, G65X, Q69A, F99S, N105T, Y145F, S147C, H148D, M153T, V163A, I171V, T203V, Q204C, E222Q.
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;293 K;100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 1.63 Å
R-free 0.193
|
|
6AA2
X-ray structure of ReQy1 (oxidized form)
Deposited 2018-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147CA, V150I, T167I, T203Y, Q204C, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;50mM Tris-HCl(pH 7.5), 150mM NaCl, 250mM Trilithium Citrate, 14%(w/v) PEG 3350
|
Resolution 2.30 Å
R-free 0.229
|
|
6AA2
X-ray structure of ReQy1 (oxidized form)
Deposited 2018-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147CA, V150I, T167I, T203Y, Q204C, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;50mM Tris-HCl(pH 7.5), 150mM NaCl, 250mM Trilithium Citrate, 14%(w/v) PEG 3350
|
Resolution 2.30 Å
R-free 0.229
|
|
6AA2
X-ray structure of ReQy1 (oxidized form)
Deposited 2018-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–238(237 aa)
|
Mutation:K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147CA, V150I, T167I, T203Y, Q204C, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;50mM Tris-HCl(pH 7.5), 150mM NaCl, 250mM Trilithium Citrate, 14%(w/v) PEG 3350
|
Resolution 2.30 Å
R-free 0.229
|
|
6AA6
X-ray structure of ReQy1 (reduced form)
Deposited 2018-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147SA, V150I, T167I, T203Y, Q204C, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;50mM Tris-HCl(pH7.0), 150mM NaCl, 20%(w/v) PEG3350
|
Resolution 2.39 Å
R-free 0.247
|
|
6AA6
X-ray structure of ReQy1 (reduced form)
Deposited 2018-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Mutation:K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147SA, V150I, T167I, T203Y, Q204C, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;50mM Tris-HCl(pH7.0), 150mM NaCl, 20%(w/v) PEG3350
|
Resolution 2.39 Å
R-free 0.247
|
|
6AS9
Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P212121 form 2
Deposited 2017-08-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ACT ACETATE ION × 10
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 10
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;277 K;0.1 M sodium acetate, pH 5.0 and 65% (v/v) 2-methyl-2,4-pentanediol
|
Resolution 1.75 Å
R-free 0.183
|
|
6B7R
Truncated strand 11-less green fluorescent protein
Deposited 2017-10-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–214(213 aa)
|
Mutation:S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1M CHES pH 9.5, 1.0M trisodium citrate
|
Resolution 1.73 Å
R-free 0.184
|
|
6B7R
Truncated strand 11-less green fluorescent protein
Deposited 2017-10-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–214(213 aa)
|
Mutation:S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;0.1M CHES pH 9.5, 1.0M trisodium citrate
|
Resolution 1.73 Å
R-free 0.184
|
|
6B7T
Truncated strand 10-less green fluorescent protein
Deposited 2017-10-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
214–237(24 aa)
Chain A
3–194(192 aa)
|
Mutation:;K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N,K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N
;
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:;K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N,K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N
;
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M HEPES pH 7.0, 0.2M ammonium chloride, 22.5 v/v% PEG 6000
|
Resolution 1.91 Å
R-free 0.209
|
|
6B7T
Truncated strand 10-less green fluorescent protein
Deposited 2017-10-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
214–237(24 aa)
Chain B
3–194(192 aa)
|
Mutation:;K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N,K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N
;
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:;K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N,K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N
;
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M HEPES pH 7.0, 0.2M ammonium chloride, 22.5 v/v% PEG 6000
|
Resolution 1.91 Å
R-free 0.209
|
|
6EFR
Crystal Structure of iNicSnFR 1.0
Deposited 2018-08-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–145(145 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;6mM nicotine, 50mM MgCl2, 10mM HEPES, 30% PEG 550
|
Resolution 2.40 Å
R-free 0.250
|
|
6FLL
SPECTROSCOPIC AND STRUCTURAL STUDY OF QW, A EGFP MUTANT SHOWING PHOTOSWITCHING PROPERTIES
Deposited 2018-01-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:YES
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;293 K;PEG 3350, 0.1 M AMMONIUM ACETATE, 0.2 M NH4F, PH 5.0
|
Resolution 1.79 Å
R-free 0.232
|
|
6FWW
GFP/KKK. A redesigned GFP with improved solubility
Deposited 2018-03-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:V11K, Y39K, F64L, F99S, M153T, V163A, L221K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;291 K;0.1 M MMT buffer, 25 % PEG 1500, pH 4.0
|
Resolution 1.13 Å
R-free 0.203
|
|
6GEL
The structure of TWITCH-2B
Deposited 2018-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–227(227 aa)
Chain A
174–238(65 aa)
Chain A
1–173(173 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 2
GOL GLYCEROL × 1
PG4 TETRAETHYLENE GLYCOL × 2
FMT FORMIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7;293 K;0.2 M sodium formiate, 5 mM calcium chloride, 18 % PEG 3350
|
Resolution 2.51 Å
R-free 0.240
|
|
6GEL
The structure of TWITCH-2B
Deposited 2018-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–227(227 aa)
Chain B
174–238(65 aa)
Chain B
1–173(173 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 2
GOL GLYCEROL × 2
FMT FORMIC ACID × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7;293 K;0.2 M sodium formiate, 5 mM calcium chloride, 18 % PEG 3350
|
Resolution 2.51 Å
R-free 0.240
|
|
6GEZ
THE STRUCTURE OF TWITCH-2B N532F
Deposited 2018-04-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–227(227 aa)
Chain A
174–238(65 aa)
Chain A
1–173(173 aa)
|
Mutation:N532F
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:N532F
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:N532F
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 2
FMT FORMIC ACID × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7;293 K;0.2 M SODIUM FORMIATE, PH 7.0, 5 MM CALCIUM CHLORIDE, 20 % PEG3350
|
Resolution 2.47 Å
R-free 0.234
|
|
6GEZ
THE STRUCTURE OF TWITCH-2B N532F
Deposited 2018-04-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–227(227 aa)
Chain B
174–238(65 aa)
Chain B
1–173(173 aa)
|
Mutation:N532F
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:N532F
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:N532F
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 2
FMT FORMIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7;293 K;0.2 M SODIUM FORMIATE, PH 7.0, 5 MM CALCIUM CHLORIDE, 20 % PEG3350
|
Resolution 2.47 Å
R-free 0.234
|
|
6GO8
Structure of GFPmut2 crystallized at pH 6
Deposited 2018-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65A, V68L, S72A: First six residues GSHIGP derive from the expression tag
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6;277 K;45% MPD
|
Resolution 1.65 Å
R-free 0.174
|
|
6GO9
Structure of GFPmut2 crystallized at pH 6 and transferred to pH 7
Deposited 2018-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65A, V68L, S72A: First six residues GSHIGP derive from the expression tag
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2
MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6;277 K;45% MPD
|
Resolution 1.67 Å
R-free 0.193
|
|
6GQG
Structure of GFPmut2 crystallized at pH 8.5
Deposited 2018-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65A, V68L, S72A; First six residues GSHIGP derive from the expression tag
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;277 K;0.2 M CaCl2, 19% PEG 4000
|
Resolution 1.79 Å
R-free 0.223
|
|
6GQH
Structure of GFPmut2 crystallized at pH 8.5 and transferred to pH 6
Deposited 2018-06-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65A, V68L, S72A; First six residues GSHIGP derive from the expression tag
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;277 K;0.2 M CaCl2, 19% PEG 4000
|
Resolution 2.40 Å
R-free 0.236
|
|
6GRM
Structure of GFPmut2 crystallized at pH 6 and transferred to pH 9
Deposited 2018-06-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:S65A, V68L, S72A: First six residues GSHIGP derive from the expression tag
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6;277 K;MPD 45%
|
Resolution 2.30 Å
R-free 0.275
|
|
6HR1
Crystal structure of the YFPnano fusion protein
Deposited 2018-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
TLA L(+)-TARTARIC ACID × 1
CA CALCIUM ION × 4
EDO 1,2-ETHANEDIOL × 2
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.8;293 K;24% w/v PEG 3350
0.2 M di-Ammonium tartrate
10% v/v Glycerol
|
Resolution 1.90 Å
R-free 0.214
|
|
6HR1
Crystal structure of the YFPnano fusion protein
Deposited 2018-09-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
EDO 1,2-ETHANEDIOL × 7
GOL GLYCEROL × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.8;293 K;24% w/v PEG 3350
0.2 M di-Ammonium tartrate
10% v/v Glycerol
|
Resolution 1.90 Å
R-free 0.214
|
|
6IR6
Green fluorescent protein variant GFPuv with the native lysine residue at the C-terminus
Deposited 2018-11-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:Q80R, F99S, M153T, V163A, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;30%(w/v) PEG 1500, 3%(v/v) MPD, 0.2M Magnesium sulfate, 0.1M Sodium acetate/Acetic acid pH 5.5
|
Resolution 1.64 Å
R-free 0.216
|
|
6IR7
Green fluorescent protein variant GFPuv with the modification to 6-hydroxynorleucine at the C-terminus
Deposited 2018-11-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–237(236 aa)
|
Mutation:Q80R, F99S, M153T, V163A, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
LDO 6-HYDROXY-L-NORLEUCINE × 1
SO4 SULFATE ION × 1
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M Ammonium Sulfate, 0.1 M MES pH 6.5, 30% PEGMME5000
|
Resolution 1.28 Å
R-free 0.195
|
|
6ITC
Structure of a substrate engaged SecA-SecY protein translocation machine
Deposited 2018-11-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain G
1–238(238 aa)
|
Mutation:Q80R,F99S,M153T,V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
BEF BERYLLIUM TRIFLUORIDE ION × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 1
PGV (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.45 Å
|
|
6JGH
Crystal structure of the F99S/M153T/V163A/T203I variant of GFP at 0.94 A
Deposited 2019-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:T203I, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;308 K;PEG 4000, MgCl2, Tris-HCl buffer
|
Resolution 0.94 Å
R-free 0.129
|
|
6JGI
Crystal structure of the S65T/F99S/M153T/V163A variant of GFP at 0.85 A
Deposited 2019-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;308 K;PEG 4000, MgCl2, Tris-HCl buffer
|
Resolution 0.85 Å
R-free 0.112
|
|
6JGJ
Crystal structure of the F99S/M153T/V163A/E222Q variant of GFP at 0.78 A
Deposited 2019-02-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:E222Q, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.5;308 K;PEG 4000, MgCl2, Tris-HCl buffer
|
Resolution 0.78 Å
R-free 0.125
|
|
6KKZ
Crystal structure of the S65T/F99S/M153T/V163A variant of perdeuterated GFP at pD 8.5
Deposited 2019-07-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.1;308 K;PEG 4000, MgCl2, Tris-DCl buffer
|
Resolution 0.90 Å
R-free 0.123
|
|
6KL0
Crystal structure of the S65T/F99S/M153T/V163A variant of perdeuterated GFP at pD 7.0
Deposited 2019-07-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.6;308 K;PEG 4000, MgCl2, Tris-DCl buffer
|
Resolution 0.80 Å
R-free 0.120
|
|
6KL1
Crystal structure of the S65T/F99S/M153T/V163A variant of non-deuterated GFP at pD 8.5
Deposited 2019-07-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–232(231 aa)
|
Mutation:S65T, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8.1;308 K;PEG 4000, MgCl2, Tris-DCl buffer
|
Resolution 0.85 Å
R-free 0.118
|
|
6L27
X-ray crystal structure of the mutant green fluorescent protein
Deposited 2019-10-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
4–231(228 aa)
|
Mutation:SYG was converted to GYS of chromophore by post translational reaction.
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M MES-NaOD (pD 7.0), 5.0 % w/v PEG 2000 and 50 mM NDSB
|
Resolution 0.77 Å
R-free 0.124
|
|
6LR7
Crystal structure of GFPuv complexed with the nanobody LaG16 at 1.67 Angstron resolution
Deposited 2020-01-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;0.3M Sodium Chloride, 0.01M Tris 8.0, 27.5% w/v PEG
|
Resolution 1.67 Å
R-free 0.226
|
|
6MB2
Cryo-EM structure of the PYD filament of AIM2
Deposited 2018-08-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 30
PDB declaration: 30-meric
|
Chain a
2–229(228 aa)
Fragment:UNP residues 2-229
Chain b
2–229(228 aa)
Fragment:UNP residues 2-229
Chain c
2–229(228 aa)
Fragment:UNP residues 2-229
Chain d
2–229(228 aa)
Fragment:UNP residues 2-229
Chain e
2–229(228 aa)
Fragment:UNP residues 2-229
Chain f
2–229(228 aa)
Fragment:UNP residues 2-229
Chain g
2–229(228 aa)
Fragment:UNP residues 2-229
Chain h
2–229(228 aa)
Fragment:UNP residues 2-229
Chain i
2–229(228 aa)
Fragment:UNP residues 2-229
Chain j
2–229(228 aa)
Fragment:UNP residues 2-229
Chain k
2–229(228 aa)
Fragment:UNP residues 2-229
Chain l
2–229(228 aa)
Fragment:UNP residues 2-229
Chain m
2–229(228 aa)
Fragment:UNP residues 2-229
Chain n
2–229(228 aa)
Fragment:UNP residues 2-229
Chain o
2–229(228 aa)
Fragment:UNP residues 2-229
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.00 Å
R-free 0.423
|
|
6MDR
Cryo-EM structure of the Ceru+32/GFP-17 protomer
Deposited 2018-09-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 16
PDB declaration: hexadecameric
|
Chain a
3–232(230 aa)
Fragment:UNP residues 3-232
Chain b
2–232(231 aa)
Fragment:UNP residues 3-232
Chain c
3–232(230 aa)
Fragment:UNP residues 3-232
Chain d
2–232(231 aa)
Fragment:UNP residues 3-232
Chain e
3–232(230 aa)
Fragment:UNP residues 3-232
Chain f
2–232(231 aa)
Fragment:UNP residues 3-232
Chain g
3–232(230 aa)
Fragment:UNP residues 3-232
Chain h
2–232(231 aa)
Fragment:UNP residues 3-232
Chain i
3–232(230 aa)
Fragment:UNP residues 3-232
Chain j
2–232(231 aa)
Fragment:UNP residues 3-232
Chain k
3–232(230 aa)
Fragment:UNP residues 3-232
Chain l
2–232(231 aa)
Fragment:UNP residues 3-232
Chain m
3–232(230 aa)
Fragment:UNP residues 3-232
Chain n
2–232(231 aa)
Fragment:UNP residues 3-232
Chain o
3–232(230 aa)
Fragment:UNP residues 3-232
Chain p
2–232(231 aa)
Fragment:UNP residues 3-232
|
Mutation:;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
;
Mutation:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
Mutation:;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
;
Mutation:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
Mutation:;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
;
Mutation:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
Mutation:;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
;
Mutation:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
Mutation:;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
;
Mutation:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
Mutation:;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
;
Mutation:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
Mutation:;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
;
Mutation:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
Mutation:;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
;
Mutation:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.47 Å
|
|
6MWQ
Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP
Deposited 2018-10-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
2–230(229 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;Grids were frozen on a manual plunger at the Scripps Research Institute Core Microscopy Facility in a 4 degrees C cold room humidified to >95%.
|
Resolution 3.00 Å
|
|
6MWQ
Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP
Deposited 2018-10-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain J
2–230(229 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;Grids were frozen on a manual plunger at the Scripps Research Institute Core Microscopy Facility in a 4 degrees C cold room humidified to >95%.
|
Resolution 3.00 Å
|
|
6MWQ
Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP
Deposited 2018-10-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain I
2–230(229 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;Grids were frozen on a manual plunger at the Scripps Research Institute Core Microscopy Facility in a 4 degrees C cold room humidified to >95%.
|
Resolution 3.00 Å
|
|
6MWQ
Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP
Deposited 2018-10-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
2–230(229 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;Grids were frozen on a manual plunger at the Scripps Research Institute Core Microscopy Facility in a 4 degrees C cold room humidified to >95%.
|
Resolution 3.00 Å
|
|
6QQ8
Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 290 kGy
Deposited 2019-02-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;100mM HEPES pH 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.46 Å
R-free 0.197
|
|
6QQ9
Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 5.8 MGy
Deposited 2019-02-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CO2 CARBON DIOXIDE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;100mM HEPES 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.82 Å
R-free 0.195
|
|
6QQA
Room temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 21 kGy
Deposited 2019-02-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;15% PEG 8000, 0.1M MGCL2, 0.1 M HEPES PH 7.0
|
Resolution 1.66 Å
R-free 0.167
|
|
6QQB
Room temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 147 kGy
Deposited 2019-02-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;15% PEG 8000, 0.1M MGCL2, 0.1 M HEPES
|
Resolution 2.45 Å
R-free 0.266
|
|
6QUH
GHK tagged GFP variant crystal form II at 1.34A wavelength
Deposited 2019-02-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3
CU COPPER (II) ION × 2
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1M Sosium Acetate pH 5.4, 30%MPD, 0.1M Cacl2
|
Resolution 1.50 Å
R-free 0.188
|
|
6QUH
GHK tagged GFP variant crystal form II at 1.34A wavelength
Deposited 2019-02-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3
CU COPPER (II) ION × 2
CA CALCIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1M Sosium Acetate pH 5.4, 30%MPD, 0.1M Cacl2
|
Resolution 1.50 Å
R-free 0.188
|
|
6QUI
GHK tagged GFP variant at 17Kev
Deposited 2019-02-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CU COPPER (II) ION × 1
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1M Mes pH 6.5, 1.2M Ammonium sulphate, 8% glycerol
|
Resolution 1.94 Å
R-free 0.224
|
|
6QUI
GHK tagged GFP variant at 17Kev
Deposited 2019-02-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CU COPPER (II) ION × 1
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1M Mes pH 6.5, 1.2M Ammonium sulphate, 8% glycerol
|
Resolution 1.94 Å
R-free 0.224
|
|
6QUJ
GHK tagged GFP variant
Deposited 2019-02-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CU COPPER (II) ION × 1
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1M Mes pH 6.5, 1.2M Ammonium Sulphate, 8% Glycerol
|
Resolution 1.68 Å
R-free 0.221
|
|
6QUJ
GHK tagged GFP variant
Deposited 2019-02-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CU COPPER (II) ION × 1
SO4 SULFATE ION × 1
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1M Mes pH 6.5, 1.2M Ammonium Sulphate, 8% Glycerol
|
Resolution 1.68 Å
R-free 0.221
|
|
6SM0
Venus 66 p-Azido-L-Phenylalanin (azF) variant, dark grown
Deposited 2019-08-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–230(229 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OXY OXYGEN MOLECULE × 1
ZN ZINC ION × 1
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;293 K;10mM Zn Cl2, 100 mM Na acetate,
20% PEG 6000
|
Resolution 1.91 Å
R-free 0.243
|
|
6T39
Crystal structure of rsEGFP2 in its off-state determined by SFX
Deposited 2019-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 8;293 K;100 mM HEPES pH 8.0, 2.5 M ammonium sulphate
|
Resolution 1.60 Å
R-free 0.202
|
|
6T3A
Difference-refined structure of rsEGFP2 10 ns following 400-nm laser irradiation of the off-state determined by SFX
Deposited 2019-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;pH 8;293 K;100 mM HEPES pH 8.0, 2.5 M ammonium sulphate
|
Resolution 1.85 Å
R-free 0.287
|
|
6T90
OCT4-SOX2-bound nucleosome - SHL-6
Deposited 2019-10-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 10
PDB declaration: dodecameric
|
Chain K
1–238(238 aa)
|
Not recorded
|
PTD PENTANEDIAL × 9
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.05 Å
|
|
6UN4
Crystal structure of rsEGFP2, Y67(3-ClY), Y107(3-ClY)
Deposited 2019-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L,Q69L,V163S,A206K,H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.1;293 K;80 mM HEPES, pH 8.1, 1.84 M ammonium sulfate
|
Resolution 1.50 Å
R-free 0.198
|
|
6UN5
Crystal structure of green fluorescent protein (GFP); S65T, Y66(2,3,5-F3Y); ih circular permutant (50-51)
Deposited 2019-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
4–50(47 aa)
Chain B
4–50(47 aa)
|
Mutation:;A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S,A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V
;
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:;A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S,A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V
;
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.15 M ammonium acetate, 31% PEG 3350
|
Resolution 1.36 Å
R-free 0.205
|
|
6UN6
Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-NO2Y); ih circular permutant (50-51)
Deposited 2019-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
4–50(47 aa)
Chain B
4–50(47 aa)
|
Mutation:A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.15 M ammonium acetate, 34% PEG 3350
|
Resolution 1.50 Å
R-free 0.181
|
|
6UN7
Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-OMeY); ih circular permutant (50-51)
Deposited 2019-10-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
4–50(47 aa)
Chain B
4–50(47 aa)
|
Mutation:A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.15 M ammonium acetate, 34% PEG 3350
|
Resolution 1.50 Å
R-free 0.191
|
|
6UZ0
Cardiac sodium channel with flecainide
Deposited 2019-11-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2
9Z9 (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en × 5
6OU [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate × 11
K4D Flecainide × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE;waiting for 20s, blot for 2.5-3.5s before plunging
|
Resolution 3.24 Å
|
|
6UZ3
Cardiac sodium channel
Deposited 2019-11-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2
9Z9 (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en × 5
6OU [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE;waiting for 20s, blot for 2.5-3.5s before plunging
|
Resolution 3.50 Å
|
|
6VAL
Cryo-EM structure of an undecameric chicken CALHM1 and human CALHM2 chimera
Deposited 2019-12-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 11
PDB declaration: undecameric
|
Chain A
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain B
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain C
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain D
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain E
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain F
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain G
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain H
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain I
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain J
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain K
1–238(238 aa)
Fragment:GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 sec before plunging
|
Resolution 3.87 Å
|
|
6VAM
Cryo-EM structure of octameric chicken CALHM1
Deposited 2019-12-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Fragment:GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain B
2–238(237 aa)
Fragment:GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain C
2–238(237 aa)
Fragment:GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain D
2–238(237 aa)
Fragment:GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain E
2–238(237 aa)
Fragment:GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain F
2–238(237 aa)
Fragment:GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain G
2–238(237 aa)
Fragment:GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain H
2–238(237 aa)
Fragment:GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 sec before plunging
|
Resolution 3.63 Å
|
|
6WRF
ClpX-ClpP complex bound to GFP-ssrA, recognition complex
Deposited 2020-04-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 14
PDB declaration: tetradecameric
|
Chain S
3–229(227 aa)
|
Not recorded
|
AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5
MG MAGNESIUM ION × 5
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.14 Å
|
|
6WSG
ClpX-ClpP complex bound to ssrA-tagged GFP, intermediate complex
Deposited 2020-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 14
PDB declaration: tetradecameric
|
Chain S
3–229(227 aa)
|
Not recorded
|
AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5
MG MAGNESIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.16 Å
|
|
6WV9
Takifugu rubripes VKOR-like with vitamin K1 in noncatalytic state
Deposited 2020-05-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–144(144 aa)
Chain A
146–238(93 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 7.5;295 K;42% PEG 400, 50 mM ammonium formate, 0.1 M HEPES pH 7.5.
protein-ligand co-crystallization
|
Resolution 3.35 Å
R-free 0.282
|
|
6WVA
Takifugu rubripes VKOR-like with vitamin K1 epoxide at non-catalytic state
Deposited 2020-05-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–144(144 aa)
Chain A
146–238(93 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 7.5;295 K;42% PEG 400, 50 mM ammonium formate, 0.1 M HEPES pH 7.5
|
Resolution 3.35 Å
R-free 0.278
|
|
6WVD
Human JAGN1
Deposited 2020-05-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–144(144 aa)
Chain A
146–231(86 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;295 K;30% PEG400, 0.1 M Li2SO4, 0.1M NaCl, 0.1 M Tris pH 8.0
|
Resolution 2.25 Å
R-free 0.227
|
|
6WVE
Chicken SPCS1
Deposited 2020-05-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–144(144 aa)
Chain A
146–231(86 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 6;295 K;25% PEG 400, 100 mM ammonium acetate, 0.1 M MES pH 6.0
|
Resolution 2.43 Å
R-free 0.232
|
|
6WVF
E.coli DsbB C104S with ubiquinone
Deposited 2020-05-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–144(144 aa)
Chain A
146–231(86 aa)
|
Mutation:C8A,C49V,C104S
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:C8A,C49V,C104S
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
UQ1 UBIQUINONE-1 × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;295 K;34% PEG 400, 60 mM NaCl, 0.1 M HEPES pH 7.5
|
Resolution 2.90 Å
R-free 0.286
|
|
6WVG
human CD53
Deposited 2020-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–144(144 aa)
Chain A
145–230(86 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 4
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 6;295 K;30% PEG 400, 0.1 M KH2PO4, 0.1 M MES pH 6.0
|
Resolution 2.90 Å
R-free 0.269
|
|
6WVG
human CD53
Deposited 2020-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–144(144 aa)
Chain B
145–230(86 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 6;295 K;30% PEG 400, 0.1 M KH2PO4, 0.1 M MES pH 6.0
|
Resolution 2.90 Å
R-free 0.269
|
|
6WVI
VKOR-like from Takifugu rubripes
Deposited 2020-05-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–144(144 aa)
Chain A
146–238(93 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE;pH 7.5;295 K;42% PEG 400, 50 mM ammonium formate, 0.1 M HEPES pH 7.5
|
Resolution 2.40 Å
R-free 0.235
|
|
6YOV
OCT4-SOX2-bound nucleosome - SHL+6
Deposited 2020-04-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 10
PDB declaration: dodecameric
|
Chain K
1–238(238 aa)
|
Not recorded
|
PTD PENTANEDIAL × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.42 Å
|
|
6ZSM
Crystal structure of rsGCaMP double mutant Ile80His/Val116Ile in the ON state (non-illuminated)
Deposited 2020-07-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 5
FMT FORMIC ACID × 14
EDO 1,2-ETHANEDIOL × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.8;292 K;0.20 M sodium formate, 0.1 M Bis-Tris-Propane buffer pH 8.5, 19% (w/v) PEG 3350
|
Resolution 1.95 Å
R-free 0.198
|
|
6ZSN
Crystal structure of rsGCaMP double mutant Ile80His/Val116Ile in the OFF state (illuminated)
Deposited 2020-07-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
149–238(90 aa)
Chain A
2–144(143 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
FMT FORMIC ACID × 6
CA CALCIUM ION × 4
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;292 K;0.20 M sodium formate, 0.1 M Bis-Tris-Propane buffer pH 8.5, 19% (w/v) PEG 3350
|
Resolution 2.60 Å
R-free 0.259
|
|
6ZUI
Crystal structure of the Cys-Ser mutant of the cpYFP-based biosensor for hypochlorous acid
Deposited 2020-07-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
145–237(93 aa)
Chain A
2–144(143 aa)
|
Mutation:C353S
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:C353S
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;283.15 K;Tris (0.1 M, pH 8), CaCl2 (0.1 M), MgCl2 (0.1 M) and PE15/4 (15%)
Protein concentration:7 mg/mL
|
Resolution 2.20 Å
R-free 0.273
|
|
7A7K
rsEGFP in the green-on state
Deposited 2020-08-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;200 mM (NH4)SO4
100 mM Bis-trip pH 5.5
25 % PEG 3350
|
Resolution 1.55 Å
R-free 0.211
|
|
7A7L
rsEGFP in the green-off state
Deposited 2020-08-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
3–238(236 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PG4 TETRAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;2.0 M (NH4)2SO4
200 mM K/Na-tartrate
100 mM citrate pH 5.0
100 mM b-Nicotinamide adenine dinucleotide
|
Resolution 1.30 Å
R-free 0.179
|
|
7AA5
Human TRPV4 structure in presence of 4a-PDD
Deposited 2020-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
3–238(236 aa)
Chain B
3–238(236 aa)
Chain C
3–238(236 aa)
Chain D
3–238(236 aa)
|
Not recorded
|
CA CALCIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 3 seconds before plunging
|
Resolution 4.18 Å
|
|
7AMB
Crystal structure of rsFolder2 in its fluorescent on-state
Deposited 2020-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–232(231 aa)
|
Mutation:S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å
R-free 0.190
|
|
7AMB
Crystal structure of rsFolder2 in its fluorescent on-state
Deposited 2020-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–232(231 aa)
|
Mutation:S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å
R-free 0.190
|
|
7AMB
Crystal structure of rsFolder2 in its fluorescent on-state
Deposited 2020-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–232(231 aa)
|
Mutation:S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å
R-free 0.190
|
|
7AMB
Crystal structure of rsFolder2 in its fluorescent on-state
Deposited 2020-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
2–232(231 aa)
|
Mutation:S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å
R-free 0.190
|
|
7AMF
Crystal structure of rsFolder2 in its non-fluorescent off-state
Deposited 2020-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–232(231 aa)
|
Mutation:S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å
R-free 0.193
|
|
7AMF
Crystal structure of rsFolder2 in its non-fluorescent off-state
Deposited 2020-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–232(231 aa)
|
Mutation:S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å
R-free 0.193
|
|
7AMF
Crystal structure of rsFolder2 in its non-fluorescent off-state
Deposited 2020-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–232(231 aa)
|
Mutation:S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å
R-free 0.193
|
|
7AMF
Crystal structure of rsFolder2 in its non-fluorescent off-state
Deposited 2020-10-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
2–232(231 aa)
|
Mutation:S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å
R-free 0.193
|
|
7AMU
Crystal structure of rsEGFP2 T204A in its fluorescent on-state
Deposited 2020-10-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65A, Q69L, V163S, A206K, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 6
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 11;293 K;Ammonium sulphate
|
Resolution 1.64 Å
R-free 0.226
|
|
7BYL
Cryo-EM structure of human KCNQ4
Deposited 2020-04-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
Chain E
2–238(237 aa)
Chain G
2–238(237 aa)
|
Mutation:F64L/S65T/K107T/A206K
Mutation:F64L/S65T/K107T/A206K
Mutation:F64L/S65T/K107T/A206K
Mutation:F64L/S65T/K107T/A206K
|
PT5 [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate × 4
K POTASSIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
|
|
7BYM
Cryo-EM structure of human KCNQ4 with retigabine
Deposited 2020-04-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
Chain E
2–238(237 aa)
Chain G
2–238(237 aa)
|
Mutation:F64L/S65T/K107T/A206K/H231L
Mutation:F64L/S65T/K107T/A206K/H231L
Mutation:F64L/S65T/K107T/A206K/H231L
Mutation:F64L/S65T/K107T/A206K/H231L
|
PT5 [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate × 4
FBX ethyl N-[2-azanyl-4-[(4-fluorophenyl)methylamino]phenyl]carbamate × 4
K POTASSIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
7BYN
Cryo-EM structure of human KCNQ4 with linopirdine
Deposited 2020-04-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
Chain E
2–238(237 aa)
Chain G
2–238(237 aa)
|
Mutation:F64L/S65T/K107T/A206K/H231L
Mutation:F64L/S65T/K107T/A206K/H231L
Mutation:F64L/S65T/K107T/A206K/H231L
Mutation:F64L/S65T/K107T/A206K/H231L
|
PT5 [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate × 4
K POTASSIUM ION × 3
FCC 1-phenyl-3,3-bis(pyridin-4-ylmethyl)indol-2-one × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
7CD7
GFP-40/GFPuv complex, Form I
Deposited 2020-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
3–238(236 aa)
Fragment:UNP residues 3-238
|
Mutation:Q80R, F99S, M153T, V163A, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;15% (w/v) PEG 4000, 200 mM MgCl2, 0.1 M Tris-HCl, pH 8.5
|
Resolution 1.70 Å
R-free 0.226
|
|
7CD7
GFP-40/GFPuv complex, Form I
Deposited 2020-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
3–238(236 aa)
Fragment:UNP residues 3-238
|
Mutation:Q80R, F99S, M153T, V163A, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;15% (w/v) PEG 4000, 200 mM MgCl2, 0.1 M Tris-HCl, pH 8.5
|
Resolution 1.70 Å
R-free 0.226
|
|
7CD8
GFP-40/GFPuv complex, Form II
Deposited 2020-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
3–238(236 aa)
Fragment:UNP residues 3-238
|
Mutation:Q80R, F99S, M153T, V163A, A206K
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;5.5% (w/v) PEG 8000, 5% (v/v) ethylene glycol, 50 mM [Co(NH3)6]Cl3, 0.1 M HEPES-Na, pH 7.5
|
Resolution 2.00 Å
R-free 0.220
|
|
7K18
Cardiac Sodium channel with toxin bound
Deposited 2020-09-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
6OU [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
7KM4
Crystal Structure of Oxidized Version of Redox-Sensitive Superfolder Green Fluorescent Protein
Deposited 2020-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;200, Potassium Chloride, 20% PEG-3350
|
Resolution 2.65 Å
R-free 0.321
|
|
7KS0
GluK2/K5 with 6-Cyano-7-nitroquinoxaline-2,3-dione (CNQX)
Deposited 2020-11-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.30 Å
|
|
7KS3
GluK2/K5 with L-Glu
Deposited 2020-11-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.80 Å
|
|
7KUY
Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, strychnine bound state
Deposited 2020-11-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 9
SY9 STRYCHNINE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
7L31
Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, strychnine bound state, 3.8 Angstrom
Deposited 2020-12-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 9
SY9 STRYCHNINE × 5
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
7O7C
Crystal structure of rsEGFP2 mutant V151A in the non-fluorescent off-state determined by synchrotron radiation at 100K
Deposited 2021-04-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293.15 K;100 mM HEPES pH 7.8 - 8.4 and 1.7 - 2.4 M ammonium sulfate
|
Resolution 1.55 Å
R-free 0.196
|
|
7O7D
Crystal structure of rsEGFP2 mutant V151A in the fluorescent on-state determined by synchrotron radiation at 100K
Deposited 2021-04-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;100 mM HEPES pH 7.8 - 8.4 and 1.7 - 2.4 M ammonium sulfate
|
Resolution 1.40 Å
R-free 0.179
|
|
7O7E
Crystal structure of rsEGFP2 mutant V151L in the fluorescent on-state determined by synchrotron radiation at 100K
Deposited 2021-04-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.8;293 K;1.7 M ammonium sulfate, 100 mM HEPES pH 7.8
|
Resolution 1.80 Å
R-free 0.208
|
|
7O7H
Crystal structure of rsEGFP2 mutant V151L in the non-fluorescent off-state determined by synchrotron radiation at 100K
Deposited 2021-04-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.2;293 K;1.8 M ammonium sulfate, 100 mM HEPES pH 8.2
|
Resolution 1.70 Å
R-free 0.197
|
|
7O7U
Crystal structure of rsEGFP2 in the non-fluorescent off-state determined by serial femtosecond crystallography at room temperature
Deposited 2021-04-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;293 K;100 mM HEPES pH 8.0, 2 M ammonium sulphate
|
Resolution 1.70 Å
R-free 0.215
|
|
7O7V
Crystal structure of rsEGFP2 mutant V151A in the fluorescent on-state determined by serial femtosecond crystallography at room temperature
Deposited 2021-04-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;293 K;100 mM HEPES pH 8.0, 2 M ammonium sulphate
|
Resolution 1.90 Å
R-free 0.192
|
|
7O7W
Crystal structure of rsEGFP2 mutant V151L in the non-fluorescent off-state the determined by serial femtosecond crystallography at room temperature
Deposited 2021-04-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;293 K;100 mM HEPES pH 8.0, 2 M ammonium sulphate
|
Resolution 2.10 Å
R-free 0.213
|
|
7O7X
Crystal structure of rsEGFP2 mutant V151A in the non-fluorescent off-state determined by serial femtosecond crystallography at room temperature
Deposited 2021-04-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 8;293 K;100 mM HEPES pH 8.0, 2 M ammonium sulphate
|
Resolution 1.95 Å
R-free 0.201
|
|
7PCA
Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants
Deposited 2021-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 2
EOH ETHANOL × 2
ARF FORMAMIDE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;46% ETOH, 0.25% v/v Dichloromethane
|
Resolution 1.05 Å
R-free 0.163
|
|
7PCZ
Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants
Deposited 2021-08-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EOH ETHANOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;10% polyethylenglycol (PEG) 6000, 30% ethanol and 100 mM natriumacetate
|
Resolution 1.35 Å
R-free 0.197
|
|
7PCZ
Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants
Deposited 2021-08-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EOH ETHANOL × 5
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;10% polyethylenglycol (PEG) 6000, 30% ethanol and 100 mM natriumacetate
|
Resolution 1.35 Å
R-free 0.197
|
|
7PD0
Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants
Deposited 2021-08-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PGE TRIETHYLENE GLYCOL × 2
PEG DI(HYDROXYETHYL)ETHER × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;30% PEG 4000.
|
Resolution 2.00 Å
R-free 0.298
|
|
7PD0
Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants
Deposited 2021-08-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;30% PEG 4000.
|
Resolution 2.00 Å
R-free 0.298
|
|
7PD0
Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants
Deposited 2021-08-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PGE TRIETHYLENE GLYCOL × 1
PEG DI(HYDROXYETHYL)ETHER × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;30% PEG 4000.
|
Resolution 2.00 Å
R-free 0.298
|
|
7PD0
Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants
Deposited 2021-08-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
PEG DI(HYDROXYETHYL)ETHER × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;30% PEG 4000.
|
Resolution 2.00 Å
R-free 0.298
|
|
7PHR
Structure of a fully assembled T-cell receptor engaging a tumor-associated peptide-MHC I
Deposited 2021-08-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 11
PDB declaration: undecameric
|
Chain D
1–238(238 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.08 Å
|
|
7PNN
mVenus released from fusion protein.
Deposited 2021-09-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;287 K;200 mM KCl, 20% (w/v) PEG3350
|
Resolution 1.43 Å
R-free 0.169
|
|
7SAH
Crystal Structure of LaG16 Nanobody bound to eGFP
Deposited 2021-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 9;295 K;100mM BICINE with 2% (w/v) 1,4-Dioxane and 10% (w/v) PEG20000
|
Resolution 1.60 Å
R-free 0.177
|
|
7SAI
Crystal Structure of Lag30 Nanobody bound to eGFP
Deposited 2021-09-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 5
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
PO4 PHOSPHATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;295 K;800 mM KH2PO4/NaH2PO4, 100 mM HEPES
|
Resolution 2.23 Å
R-free 0.197
|
|
7SQY
CSDaV GFP mutant
Deposited 2021-11-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 180
PDB declaration: 180-meric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å
|
|
7SQY
CSDaV GFP mutant
Deposited 2021-11-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å
|
|
7SQY
CSDaV GFP mutant
Deposited 2021-11-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Insufficient information
Homooligomer;Protein × 15
PDB declaration: pentadecameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å
|
|
7SQY
CSDaV GFP mutant
Deposited 2021-11-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Insufficient information
Homooligomer;Protein × 18
PDB declaration: octadecameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å
|
|
7SQY
CSDaV GFP mutant
Deposited 2021-11-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Insufficient information
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å
|
|
7SSV
Structure of human Kv1.3 with Fab-ShK fusion
Deposited 2021-11-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.39 Å
|
|
7SSX
Structure of human Kv1.3
Deposited 2021-11-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.89 Å
|
|
7SSY
Structure of human Kv1.3 (alternate conformation)
Deposited 2021-11-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.89 Å
|
|
7SSZ
Structure of human Kv1.3 with A0194009G09 nanobodies
Deposited 2021-11-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.25 Å
|
|
7VCM
crystal structure of GINKO1
Deposited 2021-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–144(143 aa)
Chain A
149–238(90 aa)
|
Mutation:F65L,V94I,M304K,V313A,S325G,D330Y,T353V,A356K,H381L
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F65L,V94I,M304K,V313A,S325G,D330Y,T353V,A356K,H381L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
K POTASSIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1M MES pH 6.0, 20% PEG6000
|
Resolution 1.85 Å
R-free 0.225
|
|
7VCM
crystal structure of GINKO1
Deposited 2021-09-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–144(143 aa)
Chain B
149–238(90 aa)
|
Mutation:F65L,V94I,M304K,V313A,S325G,D330Y,T353V,A356K,H381L
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:F65L,V94I,M304K,V313A,S325G,D330Y,T353V,A356K,H381L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
K POTASSIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1M MES pH 6.0, 20% PEG6000
|
Resolution 1.85 Å
R-free 0.225
|
|
7Y96
Crystal structure of the carboxy-terminal domain of a coronavirus M protein fused with a split GFP
Deposited 2022-06-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–144(144 aa)
Fragment:carboxy-terminal domain
Chain A
146–230(85 aa)
Fragment:carboxy-terminal domain
Chain B
1–144(144 aa)
Fragment:carboxy-terminal domain
Chain B
146–230(85 aa)
Fragment:carboxy-terminal domain
|
Mutation:R30S,Y39N,M153T,V163A,I171A,A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:R30S,Y39N,M153T,V163A,I171A,A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:R30S,Y39N,M153T,V163A,I171A,A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
Mutation:R30S,Y39N,M153T,V163A,I171A,A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.3;293 K;0.4 M ammonium sulfate, 0.1 M Bis-Tris pH 5.3, PEG 3350 27%, 0.5% ethyl acetate
|
Resolution 3.42 Å
R-free 0.265
|
|
7YDQ
Structure of PfNT1(Y190A)-GFP in complex with GSK4
Deposited 2022-07-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:Y190A
|
IRX 5-methyl-N-[2-(2-oxidanylideneazepan-1-yl)ethyl]-2-phenyl-1,3-oxazole-4-carboxamide × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.04 Å
|
|
8A6G
Room temperature rsEGFP2 with a chlorinated chromophore in the non-fluorescent OFF-state
Deposited 2022-06-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å
R-free 0.195
|
|
8A6N
Room temperature rsEGFP2 with a chlorinated chromophore 300 fs after Photoexcitation
Deposited 2022-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å
R-free 0.213
|
|
8A6O
Room temperature rsEGFP2 with a chlorinated chromophore 600 fs after Photoexcitation
Deposited 2022-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å
R-free 0.206
|
|
8A6P
Room temperature rsEGFP2 with a chlorinated chromophore 900 fs after photoexcitation
Deposited 2022-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å
R-free 0.204
|
|
8A6Q
Room temperature rsEGFP2 with a chlorinated chromophore 5 ps after photoexcitation
Deposited 2022-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å
R-free 0.207
|
|
8A6R
Room temperature rsEGFP2 with a chlorinated chromophore 100 ps after Photoexcitation
Deposited 2022-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å
R-free 0.205
|
|
8A6S
Room temperature rsEGFP2 with a chlorinated chromophore 1 microsecond after Photoexcitation
Deposited 2022-06-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å
R-free 0.203
|
|
8A7V
Room temperature rsEGFP2 in its OFF-state obtained with SFX
Deposited 2022-06-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH;293 K;120 mM HEPES pH 8.0, 1.5 M ammonium sulphate, 20 mM NaCl
|
Resolution 1.46 Å
R-free 0.195
|
|
8A83
rsEGFP2 with a chlorinated chromophore in the fluorescent ON-state in a crystal dehydrated after illumination
Deposited 2022-06-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;1.76 M ammonium sulfate, 0.1 M HEPES; Cryoprotectant 1.6 M sucrose, 2.72 M ammonium sulfate, 0.16 M HEPES
|
Resolution 1.81 Å
R-free 0.229
|
|
8AHA
rsEGFP2 photoswitched to its off-state at 100K
Deposited 2022-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.1;293 K;100 mM HEPES buffer, pH 8.1
1.9 M ammonium sulfate
|
Resolution 2.38 Å
R-free 0.223
|
|
8AHB
rsEGFP2 photoswitched to its off-state at room temperature and back-switched to its on-state at 100K
Deposited 2022-07-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.1;293 K;100 mM HEPES buffer, pH 8.1
1.9 M ammonium sulfate
|
Resolution 1.79 Å
R-free 0.220
|
|
8AM4
Cl-rsEGFP2 Long Wavelength Structure
Deposited 2022-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;100 mM Hepes pH 8.0, 1.80 M ammonium sulphate, 20 mM NaCl
|
Resolution 2.02 Å
R-free 0.257
|
|
8B6S
X-ray structure of the haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG1) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate
Deposited 2022-09-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
3–238(236 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OEH [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium × 1
CL CHLORIDE ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;0.085 M Tris-HCl pH 8.5, 0.17 M sodium acetate, 15% (v/v) glycerol, 27% (m/v) PEG 4000
|
Resolution 1.80 Å
R-free 0.201
|
|
8B6S
X-ray structure of the haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG1) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate
Deposited 2022-09-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
3–238(236 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OEH [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium × 1
CL CHLORIDE ION × 1
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;0.085 M Tris-HCl pH 8.5, 0.17 M sodium acetate, 15% (v/v) glycerol, 27% (m/v) PEG 4000
|
Resolution 1.80 Å
R-free 0.201
|
|
8B6T
X-ray structure of the interface optimized haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG5-TMR) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate
Deposited 2022-09-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
3–238(236 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OEH [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;0.2M magnesium chloride, 0.1 M Tris-HCl pH 8.5, 30% (m/v) PEG 4000
|
Resolution 2.00 Å
R-free 0.245
|
|
8B6T
X-ray structure of the interface optimized haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG5-TMR) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate
Deposited 2022-09-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
3–238(236 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
OEH [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;0.2M magnesium chloride, 0.1 M Tris-HCl pH 8.5, 30% (m/v) PEG 4000
|
Resolution 2.00 Å
R-free 0.245
|
|
8BAN
Secretagogin (mouse) in complex with its target peptide from SNAP-25
Deposited 2022-10-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–228(227 aa)
|
Mutation:F64L,Q80R,I167T MUTATIONS IN ENHANCED GFP (HIGHER FLUORESCENCE INTENSITY)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.5;277 K;PEG 3350 (20%), 2 mM CaCl2, 0.1 M Bis-Tris-Propane pH 6.5, 25 mM Tris-HCl pH 8.0, 0.2 M NaI
|
Resolution 2.35 Å
R-free 0.248
|
|
8BAN
Secretagogin (mouse) in complex with its target peptide from SNAP-25
Deposited 2022-10-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–228(227 aa)
|
Mutation:F64L,Q80R,I167T MUTATIONS IN ENHANCED GFP (HIGHER FLUORESCENCE INTENSITY)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.5;277 K;PEG 3350 (20%), 2 mM CaCl2, 0.1 M Bis-Tris-Propane pH 6.5, 25 mM Tris-HCl pH 8.0, 0.2 M NaI
|
Resolution 2.35 Å
R-free 0.248
|
|
8BAV
Secretagogin (human) in complex with its target peptide from SNAP-25
Deposited 2022-10-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–228(227 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ACT ACETATE ION × 1
CA CALCIUM ION × 4
144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;277 K;0.2 M Na-acetate
20% PEG3350
|
Resolution 2.30 Å
R-free 0.262
|
|
8BAV
Secretagogin (human) in complex with its target peptide from SNAP-25
Deposited 2022-10-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–228(227 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ACT ACETATE ION × 1
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;277 K;0.2 M Na-acetate
20% PEG3350
|
Resolution 2.30 Å
R-free 0.262
|
|
8BBJ
Secretagogin (mouse) in complex with its target peptide from Syntaxin-4
Deposited 2022-10-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–228(227 aa)
|
Mutation:F64L,Q80R,I167T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
CAC CACODYLATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8;277 K;0.1 M Na cacodylate pH 5.5, 0.2 M NH4SO4, 25% v/v PEGSM (PEG-smear)
|
Resolution 2.65 Å
R-free 0.269
|
|
8BBJ
Secretagogin (mouse) in complex with its target peptide from Syntaxin-4
Deposited 2022-10-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–228(227 aa)
|
Mutation:F64L,Q80R,I167T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 8;277 K;0.1 M Na cacodylate pH 5.5, 0.2 M NH4SO4, 25% v/v PEGSM (PEG-smear)
|
Resolution 2.65 Å
R-free 0.269
|
|
8BVG
Bright fluorescent protein BrUSLEE with subnanosecond fluorescence lifetime
Deposited 2022-12-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;293 K;6.4% Tacsimate pH 5.0, 16% PEG 3350
|
Resolution 2.38 Å
R-free 0.271
|
|
8BVG
Bright fluorescent protein BrUSLEE with subnanosecond fluorescence lifetime
Deposited 2022-12-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
Chain D
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;293 K;6.4% Tacsimate pH 5.0, 16% PEG 3350
|
Resolution 2.38 Å
R-free 0.271
|
|
8BVG
Bright fluorescent protein BrUSLEE with subnanosecond fluorescence lifetime
Deposited 2022-12-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;293 K;6.4% Tacsimate pH 5.0, 16% PEG 3350
|
Resolution 2.38 Å
R-free 0.271
|
|
8BXP
SfGFP C148 F206 mutant
Deposited 2022-12-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–233(233 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M sodium acetate trihydrate, 0.1 M Bis-tris propane, pH 7.5, 20% w/v PEG 3350
|
Resolution 1.79 Å
R-free 0.234
|
|
8BXP
SfGFP C148 F206 mutant
Deposited 2022-12-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–233(233 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M sodium acetate trihydrate, 0.1 M Bis-tris propane, pH 7.5, 20% w/v PEG 3350
|
Resolution 1.79 Å
R-free 0.234
|
|
8C1X
sfGFP C148 F206 mutant
Deposited 2022-12-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–233(233 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;0.2 M Sodium malonate dibasic monohydrate, 0.1 M Bis-Tris propane, pH 7.5, 20 % w/v PEG 3350
|
Resolution 1.89 Å
R-free 0.247
|
|
8C1X
sfGFP C148 F206 mutant
Deposited 2022-12-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–233(233 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;0.2 M Sodium malonate dibasic monohydrate, 0.1 M Bis-Tris propane, pH 7.5, 20 % w/v PEG 3350
|
Resolution 1.89 Å
R-free 0.247
|
|
8C1X
sfGFP C148 F206 mutant
Deposited 2022-12-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–233(233 aa)
Chain D
1–233(233 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;0.2 M Sodium malonate dibasic monohydrate, 0.1 M Bis-Tris propane, pH 7.5, 20 % w/v PEG 3350
|
Resolution 1.89 Å
R-free 0.247
|
|
8C7I
Crystal structure of the PS2 assembly factor Psb32 from the cyanobactium Thermosyncechococcus vestitus (formerly elongatus)
Deposited 2023-01-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 9.5;291 K;1 M sodium citrate, 0.1 M CHES pH 9.5
|
Resolution 2.12 Å
R-free 0.258
|
|
8DFL
Structure of human Kv1.3 with A0194009G09 nanobodies (alternate conformation)
Deposited 2022-06-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.25 Å
|
|
8DHR
An ester mutant of SfGFP
Deposited 2022-06-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:R30S, N39Y, L64F, R80Q, S99F, T105N, F145Y, T153M, A163V, V171I, V206A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;50 mM Hepes, pH 7.5 and 25% Peg4000
|
Resolution 1.75 Å
R-free 0.188
|
|
8DHR
An ester mutant of SfGFP
Deposited 2022-06-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:R30S, N39Y, L64F, R80Q, S99F, T105N, F145Y, T153M, A163V, V171I, V206A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;50 mM Hepes, pH 7.5 and 25% Peg4000
|
Resolution 1.75 Å
R-free 0.188
|
|
8DN2
Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, glycine-bound state 2(expanded open)
Deposited 2022-07-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
1–238(238 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5
HEX HEXANE × 10
HP6 HEPTANE × 9
UND UNDECANE × 3
OCT N-OCTANE × 7
GLY GLYCINE × 3
DD9 nonane × 2
NBU N-BUTANE × 3
D10 DECANE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å
|
|
8DN3
Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, apo state
Deposited 2022-07-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
1–238(238 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5
HEX HEXANE × 15
UND UNDECANE × 12
DD9 nonane × 13
NBU N-BUTANE × 5
HP6 HEPTANE × 8
D10 DECANE × 1
CL CHLORIDE ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.55 Å
|
|
8DN4
Cryo-EM structure of human Glycine Receptor alpha-1 beta heteromer, glycine-bound state3(desensitized state)
Deposited 2022-07-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
1–238(238 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5
LNK PENTANE × 1
HEX HEXANE × 9
NBU N-BUTANE × 3
OCT N-OCTANE × 1
DD9 nonane × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.10 Å
|
|
8DN5
Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, glycine-bound state1(open state)
Deposited 2022-07-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
1–238(238 aa)
|
Not recorded
|
GLY GLYCINE × 5
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5
DD9 nonane × 4
HP6 HEPTANE × 6
HEX HEXANE × 13
UND UNDECANE × 6
NBU N-BUTANE × 8
D10 DECANE × 3
OCT N-OCTANE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.63 Å
|
|
8DPD
superfolder GFP Tyr74pCNPhe mutant
Deposited 2022-07-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:S30R, Y39N, F64L, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CO2 CARBON DIOXIDE × 1
EDO 1,2-ETHANEDIOL × 4
PEG DI(HYDROXYETHYL)ETHER × 1
MG MAGNESIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;0.2 M Magnesium chloride, 0.1 M Tris-HCl pH 8.5, 25% PEG 3350
|
Resolution 1.51 Å
R-free 0.252
|
|
8DTA
Metal sensitive GFP (mseGFP) complexed with phenylarsine oxide.
Deposited 2022-07-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S,F64L,S147C,S202C,H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
SO4 SULFATE ION × 2
CA CALCIUM ION × 1
PEG DI(HYDROXYETHYL)ETHER × 2
PA0 Phenylarsine oxide × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;298 K;0.1M Tris, pH 8
0.2M Lithium sulfate
32% PEG3350
|
Resolution 1.81 Å
R-free 0.183
|
|
8ET3
Cryo-EM structure of a delivery complex containing the SspB adaptor, an ssrA-tagged substrate, and the AAA+ ClpXP protease
Deposited 2022-10-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 16
PDB declaration: hexadecameric
|
Chain S
3–238(236 aa)
|
Not recorded
|
AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 4
ADP ADENOSINE-5'-DIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å
|
|
8F6P
Rat Cardiac Sodium Channel with Ranolazine Bound
Deposited 2022-11-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 7
BMA beta-D-mannopyranose × 3
XHO (R)-ranolazine × 1
6OU [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate × 6
Y01 CHOLESTEROL HEMISUCCINATE × 13
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8FCK
Structure of the vertebrate augmin complex
Deposited 2022-12-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain E
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.88 Å
|
|
8FED
Structure of Mce1-LucB complex from Mycobacterium smegmatis (Map1)
Deposited 2022-12-06
|
Different oligomeric state
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 11
PDB declaration: undecameric
|
Chain G
33–238(206 aa)
Chain H
33–238(206 aa)
|
Not recorded
|
UNL UNKNOWN LIGAND × 31
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.76 Å
|
|
8FEF
Structure of Mce1 transporter from Mycobacterium smegmatis (Map0)
Deposited 2022-12-06
|
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 10
PDB declaration: decameric
|
Chain G
33–238(206 aa)
Chain H
33–238(206 aa)
|
Not recorded
|
UNL UNKNOWN LIGAND × 31
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.71 Å
|
|
8G0I
High Affinity nanobodies against GFP
Deposited 2023-01-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 2
NA SODIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;294 K;0.2 M potassium chloride, 20% (w/v) PEG3350
|
Resolution 2.20 Å
R-free 0.241
|
|
8IYY
Single excitation and two emissions pH sensor protein(SITE-pHorin)_pH7.0
Deposited 2023-04-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S, F64L, S65T, S72A, N146F, H148G, M153T, V163A, S175G, T203C, A206K, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;291 K;14% PEG 8000, 100 mm MgCl2, 100 mm HEPES PH 7.0
|
Resolution 2.30 Å
R-free 0.227
|
|
8IYZ
mTurquoise2 S65T
Deposited 2023-04-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L, S65T, Y66W, S72A, N146F, H148D, M153T, V163A, S175G, A206K, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;20% PEG 8000, 100 mM MgCl2, 100 mM HEPES PH 6.5
|
Resolution 1.99 Å
R-free 0.221
|
|
8IZ0
mTurquoise2 W66Y
Deposited 2023-04-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L,S72A,N146F,H148D,M153T,V163A,S175G,A206K,H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;10% PEG 8000, 100 mm MgCl2, 100 mm HEPES PH 6.5
|
Resolution 2.10 Å
R-free 0.199
|
|
8IZ1
Single excitation and two emissions pH sensor protein (SITE-pHorin)_C203E_pH5.0
Deposited 2023-04-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S, F64L, S65T, S72A, N146F, H148G, M153T, V163A, S175G, T203E, A206K, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;291 K;20% PEG 6000, 100 mm MgCl2, 100 mm Citrate Acid pH 5.0
|
Resolution 1.66 Å
R-free 0.220
|
|
8IZ2
Single excitation and two emissions pH sensor protein (SITE-pHorin)_C203E_pH8.0
Deposited 2023-04-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S, F64L, S65T, S72A, N146F, H148G, M153T, V163A, S175G, T203E, A206K, H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;291 K;PEG 8000, MgCl2, Tris-HCl
|
Resolution 1.57 Å
R-free 0.180
|
|
8IZ3
Single excitation and two emissions pH sensor protein(SITE-pHorin)_pH5.5
Deposited 2023-04-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:C48S,F64L,S72A,S65T,N146F,H148G,M153T,V163A,S175G,T203C,A206K,H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;291 K;0.1M Bis-tris pH5.5, 25%(w/v) PEG3350
|
Resolution 2.18 Å
R-free 0.247
|
|
8J0J
AtSLAC1 8D mutant in closed state
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
|
Mutation:S59D,T62D,S65D,S86D,S107D,S124D,S146D,S152D,S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V
Mutation:S59D,T62D,S65D,S86D,S107D,S124D,S146D,S152D,S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V
Mutation:S59D,T62D,S65D,S86D,S107D,S124D,S146D,S152D,S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V
|
CL CHLORIDE ION × 3
Y01 CHOLESTEROL HEMISUCCINATE × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
8J1E
AtSLAC1 in open state
Deposited 2023-04-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
|
Mutation:S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V
Mutation:S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V
Mutation:S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V
|
Y01 CHOLESTEROL HEMISUCCINATE × 3
CL CHLORIDE ION × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.84 Å
|
|
8JKC
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.1M sodium acetate pH 4.5, 2.2M Sodium Chloride
|
Resolution 1.95 Å
R-free 0.246
|
|
8JKC
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.1M sodium acetate pH 4.5, 2.2M Sodium Chloride
|
Resolution 1.95 Å
R-free 0.246
|
|
8JKC
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.1M sodium acetate pH 4.5, 2.2M Sodium Chloride
|
Resolution 1.95 Å
R-free 0.246
|
|
8JKC
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;0.1M sodium acetate pH 4.5, 2.2M Sodium Chloride
|
Resolution 1.95 Å
R-free 0.246
|
|
8JKG
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;0.1M sodium acetate pH 5.5), 2.2M Sodium Chloride
|
Resolution 2.20 Å
R-free 0.230
|
|
8JKG
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;0.1M sodium acetate pH 5.5), 2.2M Sodium Chloride
|
Resolution 2.20 Å
R-free 0.230
|
|
8JKG
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;0.1M sodium acetate pH 5.5), 2.2M Sodium Chloride
|
Resolution 2.20 Å
R-free 0.230
|
|
8JKG
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;0.1M sodium acetate pH 5.5), 2.2M Sodium Chloride
|
Resolution 2.20 Å
R-free 0.230
|
|
8JKI
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M HEPES pH 7.5, 2.5M sodium chloride, 12% PEG 1500, 2.2M sodium chloride
|
Resolution 2.10 Å
R-free 0.265
|
|
8JKI
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M HEPES pH 7.5, 2.5M sodium chloride, 12% PEG 1500, 2.2M sodium chloride
|
Resolution 2.10 Å
R-free 0.265
|
|
8JKI
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M HEPES pH 7.5, 2.5M sodium chloride, 12% PEG 1500, 2.2M sodium chloride
|
Resolution 2.10 Å
R-free 0.265
|
|
8JKI
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M HEPES pH 7.5, 2.5M sodium chloride, 12% PEG 1500, 2.2M sodium chloride
|
Resolution 2.10 Å
R-free 0.265
|
|
8JL2
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M sodium Tris pH 9.5, 0.8M sodium dihydrogen phosphate
|
Resolution 1.76 Å
R-free 0.218
|
|
8JL2
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M sodium Tris pH 9.5, 0.8M sodium dihydrogen phosphate
|
Resolution 1.76 Å
R-free 0.218
|
|
8JL2
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M sodium Tris pH 9.5, 0.8M sodium dihydrogen phosphate
|
Resolution 1.76 Å
R-free 0.218
|
|
8JL2
Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M sodium Tris pH 9.5, 0.8M sodium dihydrogen phosphate
|
Resolution 1.76 Å
R-free 0.218
|
|
8JL5
Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Citric acid pH 4.5, 20% (w/v) PEG 6000
|
Resolution 1.80 Å
R-free 0.222
|
|
8JL5
Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Citric acid pH 4.5, 20% (w/v) PEG 6000
|
Resolution 1.80 Å
R-free 0.222
|
|
8JL5
Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Citric acid pH 4.5, 20% (w/v) PEG 6000
|
Resolution 1.80 Å
R-free 0.222
|
|
8JL5
Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Citric acid pH 4.5, 20% (w/v) PEG 6000
|
Resolution 1.80 Å
R-free 0.222
|
|
8JL6
Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Citric acid pH 5.5-6.0, 20% (w/v) PEG 6000
|
Resolution 2.88 Å
R-free 0.275
|
|
8JL6
Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Citric acid pH 5.5-6.0, 20% (w/v) PEG 6000
|
Resolution 2.88 Å
R-free 0.275
|
|
8JL6
Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Citric acid pH 5.5-6.0, 20% (w/v) PEG 6000
|
Resolution 2.88 Å
R-free 0.275
|
|
8JL6
Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Citric acid pH 5.5-6.0, 20% (w/v) PEG 6000
|
Resolution 2.88 Å
R-free 0.275
|
|
8JL7
Crystal structure of the Green fluorescent protein SEA227D variant at pH 8.0
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Tris pH 8.0, 0.2M lithium chloride, 20% PEG 6000
|
Resolution 1.76 Å
R-free 0.249
|
|
8JL7
Crystal structure of the Green fluorescent protein SEA227D variant at pH 8.0
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Tris pH 8.0, 0.2M lithium chloride, 20% PEG 6000
|
Resolution 1.76 Å
R-free 0.249
|
|
8JLL
Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M CHES pH 9.5, 0.2M sodium chloride, 1.26M ammonium sulfate
|
Resolution 2.69 Å
R-free 0.282
|
|
8JLL
Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M CHES pH 9.5, 0.2M sodium chloride, 1.26M ammonium sulfate
|
Resolution 2.69 Å
R-free 0.282
|
|
8JLL
Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M CHES pH 9.5, 0.2M sodium chloride, 1.26M ammonium sulfate
|
Resolution 2.69 Å
R-free 0.282
|
|
8JLL
Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M CHES pH 9.5, 0.2M sodium chloride, 1.26M ammonium sulfate
|
Resolution 2.69 Å
R-free 0.282
|
|
8JLM
Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 4.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M acetate pH 4.5, 25% (w/v) PEG 1500, 30% (w/v) MPD
|
Resolution 1.85 Å
R-free 0.241
|
|
8JLS
Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 6.0
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M acetate pH 6.0, 25% (w/v) PEG 1500, 30% (w/v) MPD
|
Resolution 1.45 Å
R-free 0.203
|
|
8JLT
Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 7.0
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Imidazole pH 7.0, 40% (w/v) Isopropanol, 15% (w/v) PEG 8000
|
Resolution 1.94 Å
R-free 0.229
|
|
8JLT
Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 7.0
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Imidazole pH 7.0, 40% (w/v) Isopropanol, 15% (w/v) PEG 8000
|
Resolution 1.94 Å
R-free 0.229
|
|
8JLU
Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Tris pH 8.5, 0.1M Magnesium chloride, 25% (w/v) PEG 33
|
Resolution 2.09 Å
R-free 0.245
|
|
8JLU
Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Tris pH 8.5, 0.1M Magnesium chloride, 25% (w/v) PEG 33
|
Resolution 2.09 Å
R-free 0.245
|
|
8JLU
Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Tris pH 8.5, 0.1M Magnesium chloride, 25% (w/v) PEG 33
|
Resolution 2.09 Å
R-free 0.245
|
|
8JLU
Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–238(238 aa)
|
Mutation:F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298 K;0.1M Tris pH 8.5, 0.1M Magnesium chloride, 25% (w/v) PEG 33
|
Resolution 2.09 Å
R-free 0.245
|
|
8JZU
SLC15A4_TASL complex
Deposited 2023-07-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–238(238 aa)
|
Mutation:M21V,F64L,S65T,A206K,H231L
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.05 Å
|
|
8K4S
CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P
Deposited 2023-07-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain E
2–235(234 aa)
|
Not recorded
|
JW0 (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},12~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-12-oxidanyl-3-phosphonooxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
8KEX
CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P, local
Deposited 2023-08-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
2–235(234 aa)
|
Not recorded
|
JW0 (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},12~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-12-oxidanyl-3-phosphonooxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
8OTS
OCT4 and MYC-MAX co-bound to a nucleosome
Deposited 2023-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 11
PDB declaration: tridecameric
|
Chain K
2–238(237 aa)
|
Not recorded
|
PTD PENTANEDIAL × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
8OVN
X-ray structure of the SF-iGluSnFR-S72A
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
147–238(92 aa)
Chain A
1–148(148 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CIT CITRIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;1.5 M tri-sodium citrate pH 6.5
|
Resolution 2.60 Å
R-free 0.253
|
|
8OVO
X-ray structure of the SF-iGluSnFR-S72A in complex with L-aspartate
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
147–238(92 aa)
Chain A
1–148(148 aa)
Chain B
147–238(92 aa)
Chain B
1–148(148 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ASP ASPARTIC ACID × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;0.2 M lithium acetate, 21% (m/v) PEG 3350, 20 mM L-aspartate
|
Resolution 1.70 Å
R-free 0.220
|
|
8OVP
X-ray structure of the iAspSnFR in complex with L-aspartate
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
147–238(92 aa)
Chain A
1–148(148 aa)
Chain B
147–238(92 aa)
Chain B
1–148(148 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
ASP ASPARTIC ACID × 2
ACT ACETATE ION × 2
MG MAGNESIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;0.2 M magnesium acetate, 18% (m/v) PEG 3350, 40 mM L-aspartate
|
Resolution 1.70 Å
R-free 0.202
|
|
8OVY
Structure of analogue of superfolded GFP
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;PEG 3350/PEG 1K/MPD (1:1:1) 37.5%, Bicine/Trizma 0.1 M pH 8.5, Morpheus III Alkaloids 0.8% w/v, Morpheus Alcohols 0.12 M
|
Resolution 1.54 Å
R-free 0.214
|
|
8OVY
Structure of analogue of superfolded GFP
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;PEG 3350/PEG 1K/MPD (1:1:1) 37.5%, Bicine/Trizma 0.1 M pH 8.5, Morpheus III Alkaloids 0.8% w/v, Morpheus Alcohols 0.12 M
|
Resolution 1.54 Å
R-free 0.214
|
|
8PKO
The ERAD misfolded glycoprotein checkpoint complex from Chaetomium thermophilum (EDEM:PDI heterodimer).
Deposited 2023-06-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
6–238(233 aa)
|
Mutation:N-term truncation and GFP fusion
|
CA CALCIUM ION × 1
THJ THIOSULFATE × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2
MAN alpha-D-mannopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7;Micro SEC buffer: 150 mM NaCl, 20 mM MES pH 7.0, 1 mM CaCl2
cryo-EM vitrification conditions
Cryogen ETHANE;Blotting time 3 s, waiting time 30 s
Sample volume 3 uL, blot force 10
|
Resolution 2.60 Å
|
|
8QWJ
Structure of GFP variant
Deposited 2023-10-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;Fusion screen from Molecular Dimension, condition E10
30% PEG 20K/PEG 500 MME (1:2), 0.1 M Bicine/Trizma pH 8.5, 1.5% Morpheus III Vitamins , 1.2% (w/v) Morpheus III Cholic acids
|
Resolution 1.50 Å
R-free 0.278
|
|
8SFS
High Affinity nanobodies against GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NH4 AMMONIUM ION × 6
GOL GLYCEROL × 6
CL CHLORIDE ION × 1
SO4 SULFATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;294 K;0.1 M HEPES pH 7.5, 1.26 M ammonium sulphate
|
Resolution 2.37 Å
R-free 0.218
|
|
8SFS
High Affinity nanobodies against GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NH4 AMMONIUM ION × 5
GOL GLYCEROL × 4
CL CHLORIDE ION × 3
SO4 SULFATE ION × 4
NA SODIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;294 K;0.1 M HEPES pH 7.5, 1.26 M ammonium sulphate
|
Resolution 2.37 Å
R-free 0.218
|
|
8SFV
High affinity nanobodies to GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 3
SO4 SULFATE ION × 5
NA SODIUM ION × 11
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;294 K;0.2 M lithium sulphate, 0.1 M tris pH 7.0, 1 M potassium sodium tartrate
|
Resolution 1.83 Å
R-free 0.206
|
|
8SFX
High Affinity nanobodies against GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 3
MLT D-MALATE × 1
NA SODIUM ION × 7
PO4 PHOSPHATE ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;1 M bis-tris propane pH 7.0, 1.2 M DL-malic acid pH 7.0
|
Resolution 1.95 Å
R-free 0.228
|
|
8SFX
High Affinity nanobodies against GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 2
MLT D-MALATE × 1
NA SODIUM ION × 12
PO4 PHOSPHATE ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;1 M bis-tris propane pH 7.0, 1.2 M DL-malic acid pH 7.0
|
Resolution 1.95 Å
R-free 0.228
|
|
8SFZ
High Affinity nanobodies against GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 1
K POTASSIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.2 M potassium formate pH 7.3, 20% (w/v) PEG335
|
Resolution 1.90 Å
R-free 0.231
|
|
8SFZ
High Affinity nanobodies against GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
NA SODIUM ION × 1
K POTASSIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.2 M potassium formate pH 7.3, 20% (w/v) PEG335
|
Resolution 1.90 Å
R-free 0.231
|
|
8SFZ
High Affinity nanobodies against GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
K POTASSIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.2 M potassium formate pH 7.3, 20% (w/v) PEG335
|
Resolution 1.90 Å
R-free 0.231
|
|
8SG3
High Affinity nanobodies against GFP
Deposited 2023-04-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;294 K;0.2 M sodium potassium phosphate pH 6.2, 2.5 M sodium chloride
|
Resolution 3.11 Å
R-free 0.303
|
|
8SLC
High Affinity nanobodies against GFP
Deposited 2023-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 2
CL CHLORIDE ION × 3
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.1 M sodium acetate pH 4.6, 2 M sodium formate
|
Resolution 2.97 Å
R-free 0.241
|
|
8SLC
High Affinity nanobodies against GFP
Deposited 2023-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 2
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;0.1 M sodium acetate pH 4.6, 2 M sodium formate
|
Resolution 2.97 Å
R-free 0.241
|
|
8SMU
Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–39(39 aa)
Chain A
40–238(199 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HEM PROTOPORPHYRIN IX CONTAINING FE × 1
GOL GLYCEROL × 7
1PE PENTAETHYLENE GLYCOL × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;298 K;1.9 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 0.2 M sodium chloride
|
Resolution 2.45 Å
R-free 0.233
|
|
8SMU
Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–39(39 aa)
Chain B
40–238(199 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HEM PROTOPORPHYRIN IX CONTAINING FE × 1
GOL GLYCEROL × 4
1PE PENTAETHYLENE GLYCOL × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;298 K;1.9 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 0.2 M sodium chloride
|
Resolution 2.45 Å
R-free 0.233
|
|
8SMU
Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–39(39 aa)
Chain C
40–238(199 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HEM PROTOPORPHYRIN IX CONTAINING FE × 1
GOL GLYCEROL × 7
1PE PENTAETHYLENE GLYCOL × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;298 K;1.9 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 0.2 M sodium chloride
|
Resolution 2.45 Å
R-free 0.233
|
|
8SMU
Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP
Deposited 2023-04-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–39(39 aa)
Chain D
40–238(199 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
HEM PROTOPORPHYRIN IX CONTAINING FE × 1
GOL GLYCEROL × 5
1PE PENTAETHYLENE GLYCOL × 1
CL CHLORIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;298 K;1.9 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 0.2 M sodium chloride
|
Resolution 2.45 Å
R-free 0.233
|
|
8SYG
Cryo-EM structure of tetradecameric hub domain of CaMKII alpha
Deposited 2023-05-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
Chain G
2–238(237 aa)
Chain H
2–238(237 aa)
Chain I
2–238(237 aa)
Chain J
2–238(237 aa)
Chain K
2–238(237 aa)
Chain L
2–238(237 aa)
Chain M
2–238(237 aa)
Chain N
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
8T15
Cryo-EM structure of dodecameric hub domain of CaMKII alpha
Deposited 2023-06-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
Chain G
2–238(237 aa)
Chain H
2–238(237 aa)
Chain I
2–238(237 aa)
Chain J
2–238(237 aa)
Chain K
2–238(237 aa)
Chain L
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
8T17
Cryo-EM structure of tetradecameric hub domain of CaMKII beta
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
Chain G
2–238(237 aa)
Chain H
2–238(237 aa)
Chain I
2–238(237 aa)
Chain J
2–238(237 aa)
Chain K
2–238(237 aa)
Chain L
2–238(237 aa)
Chain M
2–238(237 aa)
Chain N
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
8T18
Cryo-EM structure of dodecameric hub domain of CaMKII beta
Deposited 2023-06-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
Chain G
2–238(237 aa)
Chain H
2–238(237 aa)
Chain I
2–238(237 aa)
Chain J
2–238(237 aa)
Chain K
2–238(237 aa)
Chain L
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å
|
|
8T6K
Cryo-EM structure of tetradecameric CaMKII beta holoenzyme T287A T306A T307A
Deposited 2023-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 14
PDB declaration: tetradecameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
Chain G
2–238(237 aa)
Chain H
2–238(237 aa)
Chain I
2–238(237 aa)
Chain J
2–238(237 aa)
Chain K
2–238(237 aa)
Chain L
2–238(237 aa)
Chain M
2–238(237 aa)
Chain N
2–238(237 aa)
|
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
Mutation:T287A T306A T307A
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
8T6L
Cryo-EM structure of rat cardiac sodium channel NaV1.5 with batrachotoxin analog BTX-B
Deposited 2023-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:A33T,G214D
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3
LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 10
Y01 CHOLESTEROL HEMISUCCINATE × 11
9Z9 (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en × 2
YIJ (1R)-1-[(5aR,7aR,9R,11aS,11bS,12R,13aR)-9,12-dihydroxy-2,11a-dimethyl-1,2,3,4,7a,8,9,10,11,11a,12,13-dodecahydro-7H-9,11b-epoxy-13a,5a-prop[1]enophenanthro[2,1-f][1,4]oxazepin-14-yl]ethyl benzoate × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
8T6Q
Cryo-EM structure of dodecameric CaMKII beta holoenzyme T287A T306A T307A
Deposited 2023-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 12
PDB declaration: dodecameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
Chain F
2–238(237 aa)
Chain G
2–238(237 aa)
Chain H
2–238(237 aa)
Chain I
2–238(237 aa)
Chain J
2–238(237 aa)
Chain K
2–238(237 aa)
Chain L
2–238(237 aa)
Chain N
2–238(237 aa)
|
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
Mutation:T287A,T306A,T307A
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
8TLM
Structure of a class A GPCR/Fab complex
Deposited 2023-07-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
|
Assembly 1
Insufficient information
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
8VDP
Cryogenic electron microscopy model of full-length talin without FABD
Deposited 2023-12-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8VDQ
Cryogenic electron microscopy model of full-length talin
Deposited 2023-12-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.50 Å
|
|
8W2L
TRPM7 structure in complex with anticancer agent CCT128930 in closed state
Deposited 2024-02-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Fragment:residues 3-1280 of the TRPM7 channel
Chain B
2–238(237 aa)
Fragment:residues 3-1280 of the TRPM7 channel
Chain C
2–238(237 aa)
Fragment:residues 3-1280 of the TRPM7 channel
Chain D
2–238(237 aa)
Fragment:residues 3-1280 of the TRPM7 channel
|
Not recorded
|
POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 52
CLR CHOLESTEROL × 4
M05 4-(4-chlorobenzyl)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-4-aminium × 4
DU0 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol × 4
CA CALCIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.45 Å
|
|
8WG3
mouse TMEM63b in LMNG-CHS micelle
Deposited 2023-09-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L,S65T,A206K,H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
Y01 CHOLESTEROL HEMISUCCINATE × 3
LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8WG4
mouse TMEM63b in DDM-CHS micelle with YN9303-24 Fab
Deposited 2023-09-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Mutation:F64L,S65T,A206K,H231L
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 1
Y01 CHOLESTEROL HEMISUCCINATE × 7
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
8X9P
HURP (428-534)-alpha-tubulin-beta-tubulin complex
Deposited 2023-11-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
2–217(216 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.54 Å
|
|
8XTW
Structure of human VAChT in complex with acetylcholine
Deposited 2024-01-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–229(228 aa)
|
Mutation:S30R,Y39N,F64L,S65T,Q80R,F99S,N105T,Y145F,M153T,V163A,I171V,A206V
|
ACH ACETYLCHOLINE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
8XTX
Structure of human VAChT in an apo conformation
Deposited 2024-01-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–229(228 aa)
|
Mutation:S30R,Y39N,F64L,S65T,Q80R,F99S,N105T,Y145F,M153T,V163A,I171V,A206V
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8XTY
Structure of human VAChT in complex with vesamicol
Deposited 2024-01-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–229(228 aa)
|
Mutation:S30R,Y39N,F64L,S65T,Q80R,F99S,N105T,Y145F,M153T,V163A,I171V,A206V
|
A1LWL vesamicol × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
8Y8V
Cryo-EM structure of AQP7 in POPC nanodisc
Deposited 2024-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
|
Not recorded
|
P5S O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.49 Å
|
|
8Y8V
Cryo-EM structure of AQP7 in POPC nanodisc
Deposited 2024-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Not recorded
|
P5S O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.49 Å
|
|
8Y8V
Cryo-EM structure of AQP7 in POPC nanodisc
Deposited 2024-02-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Not recorded
|
P5S O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.49 Å
|
|
8YA0
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+7C)
Deposited 2024-02-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain G
3–229(227 aa)
|
Mutation:Q80R, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
BEF BERYLLIUM TRIFLUORIDE ION × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.97 Å
|
|
8YA2
Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+20C)
Deposited 2024-02-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain G
3–229(227 aa)
|
Mutation:Q80R, F99S, M153T, V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
BEF BERYLLIUM TRIFLUORIDE ION × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.84 Å
|
|
8ZUP
Crystal structure of the F99S/M153T/V163A/T203V/E222Q variant of GFP at pH 8.5
Deposited 2024-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:F99S,M153T,V163A,T203V,E222Q
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;308 K;PEG 4000, magnesium chloride, MES-NaOH buffer (pH 5.0)
|
Resolution 1.20 Å
R-free 0.173
|
|
8ZUQ
Crystal structure of the F99S/M153T/V163A/T203I/E222Q variant of GFP at pH 8.5
Deposited 2024-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:F99S,M153T,V163A,T203I,E222Q
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;308 K;PEG 4000, magnesium chloride, MES-NaOH buffer (pH 5.0)
|
Resolution 1.48 Å
R-free 0.193
|
|
8ZUR
Crystal structure of the F99S/M153T/V163A/T203V/E222Q variant of GFP at pH 5.0
Deposited 2024-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:F99S,M153T,V163A,T203V,E222Q
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL CHLORIDE ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;308 K;PEG 4000, magnesium chloride, MES-NaOH buffer (pH 5.0)
|
Resolution 1.20 Å
R-free 0.166
|
|
8ZUS
Crystal structure of the F99S/M153T/V163A/T203V variant of GFP at pH 7.5
Deposited 2024-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:F99S,M153T,V163A,T203V
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;308 K;PEG 4000, magnesium chloride, MES-NaOH buffer (pH 5.0)
|
Resolution 1.20 Å
R-free 0.165
|
|
8ZUT
Crystal structure of the F99S/M153T/V163A variant of GFP at pH 8.5
Deposited 2024-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–231(230 aa)
|
Mutation:F99S,M153T,V163A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;308 K;PEG 4000, magnesium chloride, Tris-HCl buffer (pH 8.5)
|
Resolution 1.48 Å
R-free 0.197
|
|
9BOI
Cryo-EM structure of human Spns1 in complex with LPC (18:1)
Deposited 2024-05-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
42H (4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 5.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.22 Å
|
|
9C7C
Diheteromeric GluN1/GluN2A (delM653) in nanodisc complexed with glycine, glutamate, and GNE-4123, open conformation
Deposited 2024-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
5–238(234 aa)
Chain B
2–238(237 aa)
Chain C
5–238(234 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
A1AUV 4-cyclohexyl-N-[(8R)-2-cyclopropyl-7-hydroxy-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-6-yl]benzene-1-sulfonamide × 2
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 24
HP6 HEPTANE × 1
Y01 CHOLESTEROL HEMISUCCINATE × 8
GLY GLYCINE × 2
D12 DODECANE × 2
GLU GLUTAMIC ACID × 2
D10 DECANE × 2
HEX HEXANE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9C7E
Diheteromeric GluN1/GluN2A (delM653) in nanodisc complex with glycine, glutamate, and GNE-4123, open conformation, C2 symmetry
Deposited 2024-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
5–238(234 aa)
Chain B
2–238(237 aa)
Chain C
5–238(234 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
A1AUV 4-cyclohexyl-N-[(8R)-2-cyclopropyl-7-hydroxy-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-6-yl]benzene-1-sulfonamide × 2
Y01 CHOLESTEROL HEMISUCCINATE × 6
D12 DODECANE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.22 Å
|
|
9C7P
Diheteromeric GluN1/GluN2A (delM653) in digitonin complexed with glycine, glutamate, and GNE-4123
Deposited 2024-06-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.61 Å
|
|
9C7Q
Diheteromeric NMDA receptor GluN1/GluN2A, in complex with glycine and glutamate
Deposited 2024-06-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.05 Å
|
|
9C7R
Diheteromeric GluN1/GluN2A (M817V) in digitonin complexed with glycine, glutamate, and GNE-4123
Deposited 2024-06-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 15
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.99 Å
|
|
9CLA
Human Kv1.3 mutant-H451V
Deposited 2024-07-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.97 Å
|
|
9CLV
Human Kv1.3 mutant-P424G
Deposited 2024-07-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.18 Å
|
|
9CON
Human Kv1.3-H451V with A0194009G09 nanobodies conformation 1
Deposited 2024-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.06 Å
|
|
9CTY
Human Kv1.3-H451V with A0194009G09 nanobodies conformation 2
Deposited 2024-07-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.03 Å
|
|
9CXT
Hemagglutinin A/Hong Kong/1/68 produced in GnTI- cells
Deposited 2024-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain B
1–233(233 aa)
Chain D
1–233(233 aa)
Chain F
1–233(233 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 18
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;TBS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
9CXU
Endo H-treated hemagglutinin A/Hong Kong/1/68
Deposited 2024-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain B
1–233(233 aa)
Chain D
1–233(233 aa)
Chain F
1–233(233 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;TBS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å
|
|
9D0Y
Map of endoH-treated hemagglutinin A/Sing/INFIMH/16
Deposited 2024-08-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain D
1–233(233 aa)
Chain E
1–233(233 aa)
Chain F
1–233(233 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 30
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4;TBS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9EBW
Chimeric fluorescence biosensor formed from a lactate-binding protein and GFP, bound to lactate
Deposited 2024-11-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–146(145 aa)
Chain A
149–238(90 aa)
Chain B
2–146(145 aa)
Chain B
149–238(90 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 2
LAC LACTIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;296 K;citric acid, PEG 6000, 1,3-propanediol
|
Resolution 2.78 Å
R-free 0.285
|
|
9EBW
Chimeric fluorescence biosensor formed from a lactate-binding protein and GFP, bound to lactate
Deposited 2024-11-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain C
2–146(145 aa)
Chain C
149–238(90 aa)
Chain D
2–146(145 aa)
Chain D
149–238(90 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
LAC LACTIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;296 K;citric acid, PEG 6000, 1,3-propanediol
|
Resolution 2.78 Å
R-free 0.285
|
|
9EBX
Chimeric fluorescence biosensor formed from a lactate-binding protein and GFP
Deposited 2024-11-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–146(145 aa)
Chain A
149–238(90 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;296 K;magnesium chloride hexahydrate, HEPES, PEG 3350
|
Resolution 2.42 Å
R-free 0.280
|
|
9EEF
Human Kv1.3 mutant - G427H
Deposited 2024-11-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Mutation:G427H
Mutation:G427H
Mutation:G427H
Mutation:G427H
|
K POTASSIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.54 Å
|
|
9EI0
Human Kv1.3 mutant - G427H with A0194009G09 nanobodies
Deposited 2024-11-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
K POTASSIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.91 Å
|
|
9F22
DARPin eGFP complex DP1 (3G190.24)
Deposited 2024-04-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 2
BR BROMIDE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277.15 K;0.1 M Na acetate pH 5.5, 10% e/v PEG 8K, 10% PEG 1K, 0.2 M KBr
|
Resolution 2.20 Å
R-free 0.223
|
|
9F23
DARPin eGFP complex DP2 (2G156)
Deposited 2024-04-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
A1H87 2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2S)-2-[(2S)-2-oxidanylpropoxy]propoxy]methyl]propane-1,3-diol × 1
EDO 1,2-ETHANEDIOL × 7
NA SODIUM ION × 1
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277.15 K;50%pentaerythriol propoxylate
0.1 M Tris, pH 8.0
|
Resolution 1.59 Å
R-free 0.212
|
|
9F23
DARPin eGFP complex DP2 (2G156)
Deposited 2024-04-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain C
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
A1H87 2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2S)-2-[(2S)-2-oxidanylpropoxy]propoxy]methyl]propane-1,3-diol × 1
EDO 1,2-ETHANEDIOL × 8
NA SODIUM ION × 1
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3
PXN (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277.15 K;50%pentaerythriol propoxylate
0.1 M Tris, pH 8.0
|
Resolution 1.59 Å
R-free 0.212
|
|
9F24
DARPin eGFP complex DP4 (2G71)
Deposited 2024-04-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277.15 K;0.1 M Tris, pH 8.5, 8% PEG 20000, 8% PEG 550 MME, 0.2 M KBr
|
Resolution 2.06 Å
R-free 0.222
|
|
9F33
Cryo-EM structure of Dopamine 3 Receptor:Go complex bound to bitopic FOB02-04A - Conformation A
Deposited 2024-04-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain R
2–238(237 aa)
|
Mutation:L119W
|
A1H9N N-[2-[(1R,2S)-2-[[(2S,5S)-2-(6-azanylpyridin-3-yl)-5-methyl-morpholin-4-yl]methyl]cyclopropyl]ethyl]-1H-indole-2-carboxamide × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.05 Å
|
|
9F34
Cryo-EM structure of Dopamine 3 receptor:Go complex bound to bitopic FOB02-04A - Conformation B
Deposited 2024-04-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain R
2–238(237 aa)
|
Mutation:L119W
|
A1H9N N-[2-[(1R,2S)-2-[[(2S,5S)-2-(6-azanylpyridin-3-yl)-5-methyl-morpholin-4-yl]methyl]cyclopropyl]ethyl]-1H-indole-2-carboxamide × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.09 Å
|
|
9F6Y
CryoEM structure of Human Mediator subunit MED23 complexed with phosphorylated Elk-1 transcription factor
Deposited 2024-05-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–238(238 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.98 Å
|
|
9FBU
X-ray structure of the iGluSnFR3 in complex with L-glutamate
Deposited 2024-05-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
147–238(92 aa)
Chain A
1–148(148 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GLU GLUTAMIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;26% (m/v) PEG 1500
|
Resolution 1.70 Å
R-free 0.211
|
|
9FQT
Cryo-EM structure of MmCAT1 bound with FrMLV-RBD in the apo inward-open state
Deposited 2024-06-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
Y01 CHOLESTEROL HEMISUCCINATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9FQU
Cryo-EM structure of MmCAT1 bound with FrMLV-RBD in the arginine-bound inward-occluded state
Deposited 2024-06-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
Y01 CHOLESTEROL HEMISUCCINATE × 2
ARG ARGININE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.79 Å
|
|
9FQV
Cryo-EM structure of MmCAT1 bound with FrMLV-RBD in the lysine-bound inward-occluded state
Deposited 2024-06-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
LYS LYSINE × 1
Y01 CHOLESTEROL HEMISUCCINATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.95 Å
|
|
9FQW
Cryo-EM structure of MmCAT1 bound with FrMLV-RBD in the ornithine-bound inward-occluded state
Deposited 2024-06-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
Y01 CHOLESTEROL HEMISUCCINATE × 2
ORN L-ornithine × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.01 Å
|
|
9GU0
Human adult muscle nAChR in resting state in detergent with alpha-bungarotoxin
Deposited 2024-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 11
PDB declaration: 11-meric
|
Chain E
2–238(237 aa)
|
Mutation:EGFP insertion between residues R344 and A345 in the M3-M4 intracellular loop
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;20 mM HEPES pH 7.5, 150 mM NaCl, 0.013% DDM, 0.0013% CHS
cryo-EM vitrification conditions
Cryogen ETHANE;blot time 2s, blot force -10
|
Resolution 2.96 Å
|
|
9GU1
Human adult muscle nAChR in resting state in nanodisc with alpha-bungarotoxin
Deposited 2024-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 11
PDB declaration: 11-meric
|
Chain E
2–238(237 aa)
|
Mutation:EGFP insertion between residues R344 and A345 in the M3-M4 intracellular loop
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
CU COPPER (II) ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;20 mM HEPES pH 7.5, 150 mM NaCl
cryo-EM vitrification conditions
Cryogen ETHANE;2.5 uL of sample was frozen; blot time 4.5 s, blot force -10
|
Resolution 2.48 Å
|
|
9GU2
Human adult muscle nAChR in desensitised state in nanodisc with 100 uM acetylcholine
Deposited 2024-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain E
2–238(237 aa)
|
Mutation:EGFP insertion between residues R344 and A345 in the M3-M4 intracellular loop
|
ACH ACETYLCHOLINE × 2
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
CU COPPER (II) ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;20 mM HEPES pH 7.5, 150 mM NaCl
cryo-EM vitrification conditions
Cryogen ETHANE;2.5 ul sample, blot time=6 s, blot force=-10
|
Resolution 2.73 Å
|
|
9GU3
Human adult muscle nAChR in desensitised state in nanodisc with 1 mM acetylcholine
Deposited 2024-09-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain E
2–238(237 aa)
|
Mutation:EGFP insertion between residues R344 and A345 in the M3-M4 intracellular loop
|
ACH ACETYLCHOLINE × 2
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;20 mM HEPES pH 7.5, 150 mM NaCl
cryo-EM vitrification conditions
Cryogen ETHANE;2.5 ul sample, blot time=4 s, blot force=-10
|
Resolution 2.64 Å
|
|
9HAA
a5b3 GABAA Receptor resting state
Deposited 2024-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain A
1–238(238 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
1–238(238 aa)
Chain E
2–238(237 aa)
|
Not recorded
|
BUA butanoic acid × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
ZN ZINC ION × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;20 mM HEPES, 100 mM NaCl, 2 mM Fluorinated Fos-choline 8, 0.005% LMNG, 0.0005% CHS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.14 Å
|
|
9HNQ
a5b3 GABAA Receptor bound to GABA and Mb25 in desensitized state in detergent micelles
Deposited 2024-12-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
Chain D
1–238(238 aa)
Chain E
1–238(238 aa)
|
Not recorded
|
ABU GAMMA-AMINO-BUTANOIC ACID × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;20 mM HEPES, 100 mM NaCl, 0.005% LMNG, 0.0005% CHS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.81 Å
|
|
9HNR
a5b3 GABAA Receptor in 1 a5 to 4 b3 stoichiometry in desensitized state
Deposited 2024-12-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain C
1–238(238 aa)
Chain D
1–238(238 aa)
Chain E
1–238(238 aa)
|
Not recorded
|
ABU GAMMA-AMINO-BUTANOIC ACID × 1
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.17 Å
|
|
9HNS
a5b3 GABAAR bound to GABA and Mb25 in a desensitized state in saposin nanodiscs after long GABA treatment
Deposited 2024-12-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
1–238(238 aa)
Chain E
2–238(237 aa)
|
Not recorded
|
ABU GAMMA-AMINO-BUTANOIC ACID × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9HNT
a5b3 GABAAR bound to Etomidate, GABA, and Mb25 in a desensitized state in saposin nanodiscs
Deposited 2024-12-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain D
1–238(238 aa)
|
Not recorded
|
V8D Etomidate × 2
ABU GAMMA-AMINO-BUTANOIC ACID × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.32 Å
|
|
9HUM
a5b3 GABAAR bound to GABA and Mb25 in a desensitized state in saposin nanodiscs after short GABA treatment
Deposited 2024-12-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
1–238(238 aa)
Chain E
2–238(237 aa)
|
Not recorded
|
ABU GAMMA-AMINO-BUTANOIC ACID × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.35 Å
|
|
9J97
Closed structure of human XPR1
Deposited 2024-08-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
|
Not recorded
|
8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2
CLR CHOLESTEROL × 2
PO4 PHOSPHATE ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
9J98
Open structure of human XPR1
Deposited 2024-08-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
|
Not recorded
|
8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2
CLR CHOLESTEROL × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.33 Å
|
|
9LK2
monomeric ZYG11B-EloB-EloC + substrate peptide GYIND
Deposited 2025-01-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
|
Mutation:F821L/S822T/Q837R/F856S/M910T/V920A
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.37 Å
|
|
9LK6
dimeric ZYG11B-EloB-EloC + substrate peptide GYIND
Deposited 2025-01-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain A
2–238(237 aa)
Chain D
2–238(237 aa)
|
Mutation:F821L/S822T/Q837R/F856S/M910T/V920A
Mutation:F821L/S822T/Q837R/F856S/M910T/V920A
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.27 Å
|
|
9NA8
Augmin1345 Extended-body
Deposited 2025-02-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain E
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;50mM HEPES,150mM KCl,1mM EGTA,1mM MgCl2,10mM betamercaptoethanol
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9NA9
Augmin1345-Extended-Tripod
Deposited 2025-02-11
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain E
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.90 Å
|
|
9O58
Zymogen ADAM17-iRhom2 complex bound by the MEDI3622 Fab
Deposited 2025-04-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain B
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6
CA CALCIUM ION × 1
ZN ZINC ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.53 Å
|
|
9OO6
Human PORCN bound to inhibitor C59
Deposited 2025-05-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
A1CC5 2-[4-(2-methylpyridin-4-yl)phenyl]-N-[4-(pyridin-3-yl)phenyl]acetamide × 1
AV0 Lauryl Maltose Neopentyl Glycol × 1
ZN ZINC ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.39 Å
|
|
9OO7
Human PORCN bound to inhibitor ETC159
Deposited 2025-05-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
ZN ZINC ION × 1
A1CC6 2-(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)-N-(6-phenylpyridazin-3-yl)acetamide × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.61 Å
|
|
9OO8
Apo Human PORCN
Deposited 2025-05-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Not recorded
|
ZN ZINC ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.32 Å
|
|
9OSF
The intact LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Deposited 2025-05-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;20 mM Tris, 300 mM NaCl, 0.35 mM DDM, pH 8.0
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.83 Å
|
|
9OSI
The intact LBD state of GluK2/K5 with alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA)
Deposited 2025-05-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;20 mM Tris, 300 mM NaCl, 0.35 mM DDM, pH 8.0
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.95 Å
|
|
9P3N
The open state of zebrafish TRPM5 with 1mM EDTA and 0.5mM CBTA
Deposited 2025-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
CA CALCIUM ION × 4
YUY (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside × 4
YUV (25R)-14beta,17beta-spirost-5-en-3beta-ol × 4
A1CGW 5-chloro-N-[(5-chloro-1,3-thiazol-2-yl)methyl]-1,2-benzothiazol-6-amine × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9P3O
Zebrafish TRPM5 with 5mM calcium and 0.5mM CBTA
Deposited 2025-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4
CA CALCIUM ION × 8
YUV (25R)-14beta,17beta-spirost-5-en-3beta-ol × 4
A1CGW 5-chloro-N-[(5-chloro-1,3-thiazol-2-yl)methyl]-1,2-benzothiazol-6-amine × 4
YUY (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.92 Å
|
|
9P3P
Zebrafish TRPM5 with 5mM EGTA and 0.5mM CBTA
Deposited 2025-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4
YUY (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside × 4
YUV (25R)-14beta,17beta-spirost-5-en-3beta-ol × 4
A1CGW 5-chloro-N-[(5-chloro-1,3-thiazol-2-yl)methyl]-1,2-benzothiazol-6-amine × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
9P3T
Zebrafish TRPM5 with 5mM calcium and 0.5mM TPPO
Deposited 2025-06-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
|
Not recorded
|
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4
CA CALCIUM ION × 8
YUY (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside × 4
YUV (25R)-14beta,17beta-spirost-5-en-3beta-ol × 4
A1CG5 oxotri(phenyl)-lambda~5~-phosphane × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
9QBF
HER2/ErbB2 extracellular domain (ECD) in compact conformation in complex with trastuzumab (TZB) antibody
Deposited 2025-03-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Del1-22,Del1030-1255,C789S,C805S,C965S.
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
9QBG
HER2/ErbB2 extracellular domain (ECD) in extended conformation in complex with trastuzumab (TZB) antibody
Deposited 2025-03-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Del1-22,Del1030-1255,C789S,C805S,C965S.
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å
|
|
9QBH
HER2/ErbB2 extracellular domain (ECD) from a near full-length construct solubilized in amphipols.
Deposited 2025-03-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–238(238 aa)
|
Mutation:Del1-22,Del1030-1255,C789S,C805S,C965S.
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.77 Å
|
|
9QKS
B subtilis Type VIIb Core Unit (T7bCU) + DUF
Deposited 2025-03-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 5
PDB declaration: pentameric
|
Chain G
7–230(224 aa)
Chain H
7–230(224 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
9QNF
Connexin-32 (Cx32) in MSP2N2 nanodiscs with POPC
Deposited 2025-03-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 12
PDB declaration: 12-meric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
Chain G
2–238(237 aa)
Chain H
2–238(237 aa)
Chain I
2–238(237 aa)
Chain J
2–238(237 aa)
Chain K
2–238(237 aa)
Chain L
2–238(237 aa)
|
Not recorded
|
POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 12
CLR CHOLESTEROL × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.16 Å
|
|
9QNT
Connexin-32 (Cx32) in MSP2N2 nanodiscs with liver polar lipids
Deposited 2025-03-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 12
PDB declaration: 12-meric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
2–238(237 aa)
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
Chain G
2–238(237 aa)
Chain H
2–238(237 aa)
Chain I
2–238(237 aa)
Chain J
2–238(237 aa)
Chain K
2–238(237 aa)
Chain L
2–238(237 aa)
|
Not recorded
|
POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 12
CLR CHOLESTEROL × 12
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.29 Å
|
|
9QXL
The structure of ADGRL4 in the active-state
Deposited 2025-04-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain A
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.14 Å
|
|
9RGB
M.tuberculosis MmpS5L5-acpM complex
Deposited 2025-06-06
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain D
2–238(237 aa)
Chain E
2–238(237 aa)
Chain F
2–238(237 aa)
|
Not recorded
|
L9Q (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;50 mM HEPES pH 8.0, 150 mM NaCl, 0.004% LMNG
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
9RL4
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6
Deposited 2025-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 20
PDB declaration: 22-meric
|
Chain V
2–238(237 aa)
|
Not recorded
|
PTD PENTANEDIAL × 16
ZN ZINC ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9RL5
a5b3 GABAAR bound to Topiramate, GABA, and Mb25 in a desensitized state in saposin nanodiscs
Deposited 2025-06-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain E
2–238(237 aa)
|
Not recorded
|
ABU GAMMA-AMINO-BUTANOIC ACID × 2
TOR [(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl sulfamate × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9RMC
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 1
Deposited 2025-06-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 20
PDB declaration: 22-meric
|
Chain V
2–238(237 aa)
|
Not recorded
|
ZN ZINC ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.20 Å
|
|
9RN1
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2
Deposited 2025-06-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 20
PDB declaration: 22-meric
|
Chain V
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.90 Å
|
|
9RN2
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2
Deposited 2025-06-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 19
PDB declaration: 21-meric
|
Chain V
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.10 Å
|
|
9RPB
a5b3 GABAAR bound to GABA, and Mb25 in a desensitized state in saposin nanodiscs, topiramate-free
Deposited 2025-06-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
Chain D
1–238(238 aa)
Chain E
2–238(237 aa)
|
Not recorded
|
ABU GAMMA-AMINO-BUTANOIC ACID × 2
EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
9RPD
D. melanogaster Augmin TII N-clamp (GST-fusion) bound to a microtubule, well-defined subset of particles
Deposited 2025-06-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 9
PDB declaration: nonameric
|
Chain K
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.90 Å
|
|
9S0T
Superfolder green fluorescent protein (sfGFP) exhibiting p-(phenylazo)-L-phenylalanine (Pap) at position 39 in complex with alpha-cyclodextrin
Deposited 2025-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;3 M sodium chloride, 0.1 M sodium acetate
|
Resolution 2.05 Å
R-free 0.228
|
|
9S0T
Superfolder green fluorescent protein (sfGFP) exhibiting p-(phenylazo)-L-phenylalanine (Pap) at position 39 in complex with alpha-cyclodextrin
Deposited 2025-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–238(237 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;293 K;3 M sodium chloride, 0.1 M sodium acetate
|
Resolution 2.05 Å
R-free 0.228
|
|
9S2U
1:1 complex of M.tuberculosis MmpL5 and M.smegmatis AcpM
Deposited 2025-07-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8;50 mM HEPES pH8.0, 150 mM NaCl, 0.004% LMNG, 50 uM Bedaquiline
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
9SDL
Cryo-EM structure of PfHT1 bound to 2,5-anhydro-D-mannitol
Deposited 2025-08-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
|
Not recorded
|
A1IVP 2.5-anhydro-D-mannitol × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.42 Å
|
|
9SYR
Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
Deposited 2025-10-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 80
PDB declaration: 86-meric
|
Chain LN
2–230(229 aa)
|
Not recorded
|
ZN ZINC ION × 10
COA COENZYME A × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.55 Å
|
|
9T9P
Adenosine receptor A2a (A2AR)-beta-lactamase fusion bound to beta-lactamase inhibitory protein II (BLIPII) and ZM241385
Deposited 2025-11-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–238(237 aa)
|
Not recorded
|
ZMA 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
9U9D
Bipartite Genetically Encoded Biosensor sG-GECO1
Deposited 2025-03-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
149–172(24 aa)
Chain B
170–238(69 aa)
Chain B
2–146(145 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.2m sodium malonate dibasic monohydrate, 0.1M Bis-Tris propane pH 8.5, 20% w/v PEG 3350
|
Resolution 1.80 Å
R-free 0.227
|
|
9VED
The cryo-EM structure of mouse Piezo1-MDFI complex
Deposited 2025-06-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.63 Å
|
|
9VEE
The cryo-EM structure of human Piezo2-MDFIC2 complex (composite map)
Deposited 2025-06-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
2–238(237 aa)
Chain B
2–238(237 aa)
Chain C
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.36 Å
|
|
9VEF
The cryo-EM structure of human Piezo2-MDFIC complex (composite map)
Deposited 2025-06-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
2–238(237 aa)
Chain C
2–238(237 aa)
Chain E
2–238(237 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.75 Å
|
|
9VUI
Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase complex bound to viral protein C
Deposited 2025-07-13
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain X
1–238(238 aa)
Chain Y
1–238(238 aa)
|
Not recorded
|
ZN ZINC ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;300mM NaCl, 25mM HEPES, 1mM TCEP, 6mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.72 Å
|
|
9W1Y
DENV2 non-structural protein 1 (NS1) with C-terminal mVenus Conformation 2
Deposited 2025-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain a
1–238(238 aa)
Chain b
1–238(238 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.10 Å
|
|
9W24
DENV2 non-structural protein 1 (NS1) with C-terminal mVenus fusion
Deposited 2025-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain a
1–238(238 aa)
Chain b
1–238(238 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
9W25
DENV2 non-structural protein 1 (NS1) with C-terminal mVenus Conformation 1
Deposited 2025-07-26
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 4
PDB declaration: tetrameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
Chain a
1–238(238 aa)
Chain b
1–238(238 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.30 Å
|
|
9W62
Cryo-EM structure of human ABCD3 in inward-facing conformation in the presence of phytanoyl-CoA
Deposited 2025-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–238(238 aa)
|
Not recorded
|
CLR CHOLESTEROL × 4
LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.28 Å
|
|
9W63
Cryo-EM structure of C20:5-CoA bound state human ABCD3 in inward-facing conformation
Deposited 2025-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Not recorded
|
3IX S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenethioate × 2
CLR CHOLESTEROL × 10
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.29 Å
|
|
9W64
Cryo-EM structure of CHS bound state human ABCD3 in inward-facing conformation
Deposited 2025-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Not recorded
|
Y01 CHOLESTEROL HEMISUCCINATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.81 Å
|
|
9W65
Cryo-EM structure of ATP bound state human ABCD3 in inward-facing conformation
Deposited 2025-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Mutation:E596Q
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 4
MG MAGNESIUM ION × 4
CLR CHOLESTEROL × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.94 Å
|
|
9W66
Cryo-EM structure of ATP bound state human ABCD3 in outward-facing conformation
Deposited 2025-08-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–238(238 aa)
|
Mutation:E596Q
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 2
MG MAGNESIUM ION × 2
CLR CHOLESTEROL × 8
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
9YOP
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH docked state
Deposited 2025-10-13
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
PO4 PHOSPHATE ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
9YP4
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH docked state
Deposited 2025-10-13
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Not recorded
|
2OW methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate × 2
ADP ADENOSINE-5'-DIPHOSPHATE × 2
PO4 PHOSPHATE ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.50 Å
|
|
9YP9
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH docked state
Deposited 2025-10-13
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 2
XB2 Mavacamten × 2
ADP ADENOSINE-5'-DIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
9YR7
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH undocked state
Deposited 2025-10-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Not recorded
|
XB2 Mavacamten × 2
ADP ADENOSINE-5'-DIPHOSPHATE × 2
PO4 PHOSPHATE ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
9YRG
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH undocked state
Deposited 2025-10-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
PO4 PHOSPHATE ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
9YRH
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH undocked state
Deposited 2025-10-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
1–238(238 aa)
Chain B
1–238(238 aa)
|
Not recorded
|
2OW methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate × 2
ADP ADENOSINE-5'-DIPHOSPHATE × 2
PO4 PHOSPHATE ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
9YZQ
Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TGATGAGCAG and loaded with Engrailed homeodomain enhanced Green fluorescent protein fusion
Deposited 2025-10-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain D
1–238(238 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;298 K;40mM Magnesium acetate, 1.4M Lithium sulfate, 50mM MES pH 6.5. The crystal was crosslinked with 45mg/mL EDC overnight, and then looped into a solution of 50mM potassium chloride, 4mM calcium chloride, 10% glycerol, and 10mM Tris hydrochloride for 1 hour. The drop was then supplemented with 22 micromolar engrailed homeodomain-enhanced Green fluorescent protein fusion
|
Resolution 3.75 Å
R-free 0.338
|