7b0y

Structure of a transcribing RNA polymerase II-U1 snRNP complex

Method: ELECTRON MICROSCOPY Dmax: 220.4 Å Quality: GOOD

1. 蛋白身份与相关结构 Protein Identity & Related Structures

DNA-directed RNA polymerase II subunit RPB1

物种未注明

UniProt P11414

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 A; UniProt 1–1970 未记录 DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 16 个其他 PDB 条目、16 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 RPB1_CRIGR
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–1970; UniProt 1–1970

DNA-directed RNA polymerase subunit beta

物种未注明

UniProt A0A0B8RVL1

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 B; UniProt 1–1174 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 15 个其他 PDB 条目、15 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A0B8RVL1_PIG
Isoform
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–1174; UniProt 1–1174

DNA-directed RNA polymerase II subunit RPB3

物种未注明

UniProt I3LCH3

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 C; UniProt 1–275 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 85 个其他 PDB 条目、85 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 I3LCH3_PIG
Isoform
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–275; UniProt 1–275

DNA-directed RNA polymerase II subunit D

物种未注明

UniProt A0A287ADR4

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 D; UniProt 43–184 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 58 个其他 PDB 条目、58 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A287ADR4_PIG
Isoform
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–142; UniProt 43–184

DNA-directed RNA polymerase II subunit E

物种未注明

UniProt I3LSI7

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 E; UniProt 1–210 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 66 个其他 PDB 条目、66 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 I3LSI7_PIG
Isoform
PDB实体 5
链与序列区间 作者链 E; PDB构建体 1–210; UniProt 1–210

DNA-directed RNA polymerase II subunit F

物种未注明

UniProt F1SKN8

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 F; UniProt 1–127 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 42 个其他 PDB 条目、42 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 F1SKN8_PIG
Isoform
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–127; UniProt 1–127

DNA-directed RNA polymerase II subunit RPB7

物种未注明

UniProt I3LJZ9

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 G; UniProt 1–172 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 27 个其他 PDB 条目、27 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 I3LJZ9_PIG
Isoform
PDB实体 7
链与序列区间 作者链 G; PDB构建体 1–172; UniProt 1–172

DNA-directed RNA polymerases I, II, and III subunit RPABC3

物种未注明

UniProt I3LCB2

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 H; UniProt 1–150 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 61 个其他 PDB 条目、61 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 I3LCB2_PIG
Isoform
PDB实体 8
链与序列区间 作者链 H; PDB构建体 1–150; UniProt 1–150

DNA-directed RNA polymerase II subunit RPB9

物种未注明

UniProt P60899

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 I; UniProt 1–125 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 111 个其他 PDB 条目、111 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 RPB9_PIG
Isoform
PDB实体 9
链与序列区间 作者链 I; PDB构建体 1–125; UniProt 1–125

DNA-directed RNA polymerases I, II, and III subunit RPABC5

物种未注明

UniProt A0A4X1VYD0

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 J; UniProt 1–67 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 53 个其他 PDB 条目、53 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A4X1VYD0_PIG
Isoform
PDB实体 10
链与序列区间 作者链 J; PDB构建体 1–67; UniProt 1–67

DNA-directed RNA polymerase II subunit RPB11-a

物种未注明

UniProt F1RKE4

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 K; UniProt 1–117 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 63 个其他 PDB 条目、63 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 F1RKE4_PIG
Isoform
PDB实体 11
链与序列区间 作者链 K; PDB构建体 1–117; UniProt 1–117

RPB12

物种未注明

UniProt I3LN51

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 L; UniProt 1–58 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 42 个其他 PDB 条目、42 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 I3LN51_PIG
Isoform
PDB实体 12
链与序列区间 作者链 L; PDB构建体 1–58; UniProt 1–58

U1 small nuclear ribonucleoprotein 70 kDa

物种未注明

UniProt P08621

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 b; UniProt 1–437 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 10 个其他 PDB 条目、17 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 RU17_HUMAN
Isoform
PDB实体 17
链与序列区间 作者链 b; PDB构建体 1–437; UniProt 1–437

U1 small nuclear ribonucleoprotein A

物种未注明

UniProt P09012

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 c; UniProt 1–282 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 87 个其他 PDB 条目、145 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 SNRPA_HUMAN
Isoform
PDB实体 18
链与序列区间 作者链 c; PDB构建体 1–282; UniProt 1–282

Small nuclear ribonucleoprotein Sm D2

物种未注明

UniProt P62316

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 e; UniProt 1–118 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 79 个其他 PDB 条目、116 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 SMD2_HUMAN
Isoform
PDB实体 19
链与序列区间 作者链 e; PDB构建体 1–118; UniProt 1–118

Small nuclear ribonucleoprotein F

物种未注明

UniProt P62306

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 f; UniProt 1–86 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 82 个其他 PDB 条目、119 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 RUXF_HUMAN
Isoform
PDB实体 20
链与序列区间 作者链 f; PDB构建体 1–86; UniProt 1–86

Small nuclear ribonucleoprotein E

物种未注明

UniProt P62304

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 g; UniProt 1–92 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 82 个其他 PDB 条目、119 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 RUXE_HUMAN
Isoform
PDB实体 21
链与序列区间 作者链 g; PDB构建体 1–92; UniProt 1–92

Small nuclear ribonucleoprotein G

物种未注明

UniProt P62308

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 h; UniProt 1–76 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 81 个其他 PDB 条目、117 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 RUXG_HUMAN
Isoform
PDB实体 22
链与序列区间 作者链 h; PDB构建体 1–76; UniProt 1–76

Small nuclear ribonucleoprotein Sm D3

物种未注明

UniProt P62318

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 i; UniProt 1–126 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 77 个其他 PDB 条目、100 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 SMD3_HUMAN
Isoform
PDB实体 23
链与序列区间 作者链 i; PDB构建体 1–126; UniProt 1–126

Small nuclear ribonucleoprotein-associated protein

物种未注明

UniProt Q66K91

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 j; UniProt 1–231 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein Sm D1 × 1 (P62314) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 5 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 Q66K91_HUMAN
Isoform
PDB实体 24
链与序列区间 作者链 j; PDB构建体 1–231; UniProt 1–231

Small nuclear ribonucleoprotein Sm D1

物种未注明

UniProt P62314

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 其他组合 异源复合物 蛋白 × 21 DNA 2 RNA 2 PDB 声明:25-meric(25) 与全部聚合物数一致 链 k; UniProt 1–119 未记录 DNA-directed RNA polymerase II subunit RPB1 × 1 (P11414) DNA-directed RNA polymerase subunit beta × 1 (A0A0B8RVL1) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RPB12 × 1 (I3LN51) Non-template DNA × 1 145-nt RNA × 1 Template DNA × 1 U1 snRNA × 1 U1 small nuclear ribonucleoprotein 70 kDa × 1 (P08621) U1 small nuclear ribonucleoprotein A × 1 (P09012) Small nuclear ribonucleoprotein Sm D2 × 1 (P62316) Small nuclear ribonucleoprotein F × 1 (P62306) Small nuclear ribonucleoprotein E × 1 (P62304) Small nuclear ribonucleoprotein G × 1 (P62308) Small nuclear ribonucleoprotein Sm D3 × 1 (P62318) Small nuclear ribonucleoprotein-associated protein × 1 (Q66K91) ZN ZINC ION × 8 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.5 cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 3.60 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 81 个其他 PDB 条目、118 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 SMD1_HUMAN
Isoform
PDB实体 25
链与序列区间 作者链 k; PDB构建体 1–119; UniProt 1–119

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

SAXS 散射曲线 SAXS Profile

SAXS profile for 7b0y

P(r) 距离分布 P(r) Distribution

P(r) distribution for 7b0y
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2. 结构基本信息 2. Structure Basics

条目编号 entry_id7b0y
沉积日期 deposition_date2020-11-23
结构标题 titleStructure of a transcribing RNA polymerase II-U1 snRNP complex
关键词 keywordsTranscription, Splicing, co-transcriptional spliceosome assembly; SPLICING
实验方法 methodELECTRON MICROSCOPY

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier68.95
回转半径 Rg (电子) rg_electron68.50
零角强度 I(0) i06800170000.00
分子量 molecular_weight629690.0 kDa
排除体积 excluded_volume760780 ų
包络体积 envelope_volume1194900 ų
水化壳体积 shell_volume148170 ų
包络直径 envelope_diameter242.6
壳层 Rg shell_rg65.70
包络 Rg envelope_rg69.47
形状 Rg shape_rg68.46
总 Rg total_rg68.61
总原子数 total_atoms43792
残基数 n_residues5019
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax220.4
Rg (实空间) rg_real69.12
Rg 误差 (实空间) rg_real_error1.51
I(0) (实空间) i0_real6.7960e+09
I(0) 误差 (实空间) i0_real_error1.3190e+08
Rg (倒空间) rg_reciprocal67.88
I(0) (倒空间) i0_reciprocal6783000000.0000
解质量估计 total_estimate0.8171
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary67.1
偏度 Skewness skewness0.530
峰度 Kurtosis kurtosis-0.308
角度范围 angular_range— – 0.1150 −1
当前正则化参数 α current_alpha0.0024
最高正则化参数 α highest_alpha562000000.0000
实空间数据点数 n_real_points24
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.850; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.073

5. 晶体学与实验 5. Crystallography & Experiment

6. 实体与聚合物信息 Entities & Polymers (27)

7. 折叠分类 (SCOP + CATH) 3 domains

CATH v4.4 (3 domains)

结构域编号 domain_id7b0yA01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology274 — Enzyme I; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily100 — RNA polymerase Rpb1, domain 3
结构域编号 domain_id7b0yA02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology1360 — Gyrase A; domain 2
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id7b0yB01
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology1110 — Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3
同源超家族 H-superfamily homologous superfamily10 — RNA polymerase Rpb2, domain 2

8. 引用文献 (1)

9. 文件与曲线 (10)